Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0014308

Physical Location & Seq

Genomic Coordinates Forward (+)

28127498 .. 28130327

Gene Structure 2830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g27060.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGCGGGAACGGCGAGGAGAATGTGGGTGGCGACTGTGGTGGTTTTGGCCGTGAGCATGTGGTGGGGTGGCGCTAGGGCTGAACCGCAAGTGCCCTGCTACTTCATTTTTGGGGACTCTTTGGTTGATAATGGCAATAACAACCAGCTGCAGTCCTTGGCCAGAGCTGACTACTTGCCTTACGGGATTGACTTTGGTGGACCGACCGGAAGATTTTCCAACGGAAAAACCACCGTTGATGTTGTTGCTGAGCTTCTGGGTTTTGATGATTTCATCCCTCCCTATGCAACTGCTAGAGGCCAAGACGTACTCAAAGGAGTAAACTTTGCATCTGCAGCTGCTGGAATTAGAGAGGAAACTGGACGCCAATTGGGAGGTCGTATTACATTTAGTGGTCAGGTAAAGAATTACCAAAACACTGTGTCCCAAGTGGTGAACTTACTAGGTGGTGAGGACCAAGCTGCAAATTATCTAAGCAAATGCATACACTCAGTTGGATTAGGCAGCAACGATTACCTTAACAACTATTTCATGCCCCAATTTTACAACACCGCCAACCAATTTACCCCGGAGCAATATGCCGATTCGCTTATTCACGATTACAGTCAACAGCTGAGGATTTTGTACAATTATGGAGCAAGGAAGGTTGTGCTGTTTGGAATTGGTCAAGTAGGATGCAGTCCCAGTGAATTGGCACAAAATAGCCCAGATGGTTCCACATGCGTACAAAAAATAAACTCCGCAAACCAAATTTTCAATGGCAAGCTCAAGGCACTGGCCAATGAATTCAACACTAATCTAGCAGATGCAAGATTTATCTTCGTAGATACTTATGGCATTTTCCAGGACATAATAAGCAGCCCTGCACAATATGGATTTAGAGTTACAAACGCAGGCTGCTGTGGGGTGGGGAGGAACAATGGCCAAATTACATGTCTTCCTTTCCAAACACCATGCCAAAATAGGAACGAGTATCTATTTTGGGATGCATTTCATCCAACTGAGGCTGGCAATGCTGTTATAGCAAGGAGAGGATACAGCGCTGTTCGGGCCTCGGACGCTTACCCTATCGATATACGGCGGCTTGCCCTTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0030312 GO:0031976 GO:0031984 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

366

Amino Acids

39.94

Weight (kDa)

6.31

Isoelectric Point (pI)

25.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29670 AT1G29670 AT5G45670
fragaria_vesca	FvH4_3g06610
malus_domestica	MD00G1093600.v1.1 MD10G1270600.v1.1
prunus_persica	Prupe.4G071100_v2.0.a1
pyrus_communis	pycom05g27060 pycom10g22640
rosa_chinensis	RchiOBHm_Chr5g0012531
rosa_laevigata	RLG00000031922
rosa_multiflora	Rmu_sc0001889.1_g000034
rosa_roxburghii	Rroxscaffold_1G00064160
rosa_rugosa	Rorug05G0002200
rosa_samantha	Rh5AG096200 Rh5CG105300
rosa_wichuraiana	Rw5G008420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	5, 86, 552, 741, 1081
AcoI	YGGCCR	4 cut(s)	48, 159, 777, 922
AcsI	RAATTY	2 cut(s)	750, 785
AcyI	GRCGYC	1 cut(s)	364
AfaI	GTAC	3 cut(s)	309, 626, 726
AfeI	AGCGCT	1 cut(s)	1042
AflIII	ACRYGT	1 cut(s)	932
AgsI	TTSAA	2 cut(s)	757, 790
AjnI	CCWGG	1 cut(s)	843
AluBI	AGCT	7 cut(s)	148, 167, 253, 338, 461, 613, 766
AluI	AGCT	7 cut(s)	148, 167, 253, 338, 461, 613, 766
AlwNI	CAGNNNCTG	1 cut(s)	341
Aor51HI	AGCGCT	1 cut(s)	1042
AoxI	GGCC	6 cut(s)	48, 159, 298, 777, 922, 1050
ApeKI	GCWGC	7 cut(s)	148, 335, 338, 461, 504, 858, 897
ApoI	RAATTY	2 cut(s)	750, 785
ArsI	GACNNNNNNTTYG	2 cut(s)	919, 951
Asp700I	GAANNNNTTC	1 cut(s)	214
AspLEI	GCGC	2 cut(s)	74, 1043
AspS9I	GGNCC	3 cut(s)	200, 454, 1050
AsuC2I	CCSGG	1 cut(s)	569
AsuHPI	GGTGA	2 cut(s)	445, 461
AvaII	GGWCC	2 cut(s)	200, 454
BaeGI	GKGCMC	1 cut(s)	96
BalI	TGGCCA	3 cut(s)	161, 779, 924
BbsI	GAAGAC	1 cut(s)	929
BbvCI	CCTCAGC	1 cut(s)	614
BbvI	GCAGC	7 cut(s)	135, 325, 347, 448, 516, 870, 884
BccI	CCATC	1 cut(s)	704
BceAI	ACGGC	3 cut(s)	27, 35, 1094
BciT130I	CCWGG	1 cut(s)	845
BciVI	GTATCC	1 cut(s)	1028
BcnI	CCSGG	1 cut(s)	569
BfaI	CTAG	4 cut(s)	75, 294, 443, 800
BfmI	CTRYAG	2 cut(s)	149, 333
BfoI	RGCGCY	2 cut(s)	75, 1044
BfuI	GTATCC	1 cut(s)	1028
BisI	GCNGC	8 cut(s)	149, 336, 339, 462, 505, 859, 898, 1082
BlpI	GCTNAGC	1 cut(s)	249
BlsI	GCNGC	8 cut(s)	150, 337, 340, 463, 506, 860, 899, 1083
Bme1390I	CCNGG	2 cut(s)	569, 845
Bme18I	GGWCC	2 cut(s)	200, 454
BmgT120I	GGNCC	3 cut(s)	200, 454, 1050
BmiI	GGNNCC	1 cut(s)	715
BmrFI	CCNGG	2 cut(s)	569, 845
BmrI	ACTGGG	1 cut(s)	678
BmsI	GCATC	4 cut(s)	338, 665, 796, 976
BmuI	ACTGGG	1 cut(s)	678
BpiI	GAAGAC	1 cut(s)	929
Bpu10I	CCTNAGC	1 cut(s)	614
Bpu1102I	GCTNAGC	1 cut(s)	249
BpuEI	CTTGAG	1 cut(s)	752
BpuMI	CCSGG	1 cut(s)	569
Bsa29I	ATCGAT	1 cut(s)	1071
BsaHI	GRCGYC	1 cut(s)	364
BsaJI	CCNNGG	3 cut(s)	156, 567, 1053
BsaWI	WCCGGW	1 cut(s)	206
Bse1I	ACTGG	3 cut(s)	364, 684, 780
Bse3DI	GCAATG	1 cut(s)	1018
BseBI	CCWGG	1 cut(s)	845
BseCI	ATCGAT	1 cut(s)	1071
BseDI	CCNNGG	3 cut(s)	156, 567, 1053
BseGI	GGATG	4 cut(s)	273, 680, 991, 994
BseMI	GCAATG	1 cut(s)	1018
BseMII	CTCAG	4 cut(s)	240, 504, 605, 993
BseNI	ACTGG	3 cut(s)	364, 684, 780
BseRI	GAGGAG	1 cut(s)	31
BseSI	GKGCMC	1 cut(s)	96
BseXI	GCAGC	7 cut(s)	135, 325, 347, 448, 516, 870, 884
BsgI	GTGCAG	1 cut(s)	849
Bsh1285I	CGRYCG	1 cut(s)	207
BshFI	GGCC	6 cut(s)	50, 161, 300, 779, 924, 1052
BshVI	ATCGAT	1 cut(s)	1071
BsiEI	CGRYCG	1 cut(s)	207
BsiSI	CCGG	2 cut(s)	207, 569
BslFI	GGGAC	3 cut(s)	128, 409, 666
BsmFI	GGGAC	3 cut(s)	128, 409, 666
BsnI	GGCC	6 cut(s)	50, 161, 300, 779, 924, 1052
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp1407I	TGTACA	1 cut(s)	624
Bsp1720I	GCTNAGC	1 cut(s)	249
BspACI	CCGC	5 cut(s)	5, 86, 552, 741, 1081
BspANI	GGCC	6 cut(s)	50, 161, 300, 779, 924, 1052
BspCNI	CTCAG	4 cut(s)	241, 503, 606, 994
BspDI	ATCGAT	1 cut(s)	1071
BspLI	GGNNCC	1 cut(s)	715
BspMAI	CTGCAG	2 cut(s)	153, 337
BsrDI	GCAATG	1 cut(s)	1018
BsrGI	TGTACA	1 cut(s)	624
BsrI	ACTGG	3 cut(s)	364, 684, 780
BssECI	CCNNGG	3 cut(s)	156, 567, 1053
BssNI	GRCGYC	1 cut(s)	364
BssT1I	CCWWGG	1 cut(s)	156
Bst2UI	CCWGG	1 cut(s)	845
Bst4CI	ACNGT	4 cut(s)	37, 235, 421, 605
BstACI	GRCGYC	1 cut(s)	364
BstAUI	TGTACA	1 cut(s)	624
BstC8I	GCNNGC	4 cut(s)	764, 895, 1009, 1086
BstDEI	CTNAG	5 cut(s)	249, 473, 490, 614, 1002
BstF5I	GGATG	4 cut(s)	273, 680, 991, 994
BstH2I	RGCGCY	2 cut(s)	75, 1044
BstHHI	GCGC	2 cut(s)	74, 1043
BstMCI	CGRYCG	1 cut(s)	207
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 335, 1013, 1022, 1049, 1058
BstNI	CCWGG	1 cut(s)	845
BstNSI	RCATGY	3 cut(s)	61, 723, 936
BstSCI	CCNGG	2 cut(s)	567, 843
BstSFI	CTRYAG	2 cut(s)	149, 333
BstSLI	GKGCMC	1 cut(s)	96
BstV1I	GCAGC	7 cut(s)	135, 325, 347, 448, 516, 870, 884
BstV2I	GAAGAC	1 cut(s)	929
BstXI	CCANNNNNNTGG	1 cut(s)	691
Bsu15I	ATCGAT	1 cut(s)	1071
BsuI	GTATCC	1 cut(s)	1028
BsuRI	GGCC	6 cut(s)	50, 161, 300, 779, 924, 1052
BsuTUI	ATCGAT	1 cut(s)	1071
BtsCI	GGATG	4 cut(s)	273, 680, 991, 994
BtsIMutI	CAGTG	3 cut(s)	417, 691, 773
Cac8I	GCNNGC	4 cut(s)	764, 895, 1009, 1086
CaiI	CAGNNNCTG	1 cut(s)	341
CfoI	GCGC	2 cut(s)	74, 1043
Cfr13I	GGNCC	3 cut(s)	200, 454, 1050
ClaI	ATCGAT	1 cut(s)	1071
CseI	GACGC	2 cut(s)	372, 1067
Csp6I	GTAC	3 cut(s)	308, 625, 725
CviAII	CATG	5 cut(s)	58, 532, 720, 933, 954
CviQI	GTAC	3 cut(s)	308, 625, 725
DdeI	CTNAG	5 cut(s)	249, 473, 490, 614, 1002
EaeI	YGGCCR	4 cut(s)	48, 159, 777, 922
Eco130I	CCWWGG	1 cut(s)	156
Eco47I	GGWCC	2 cut(s)	200, 454
Eco47III	AGCGCT	1 cut(s)	1042
EcoRI	GAATTC	1 cut(s)	785
EcoRII	CCWGG	1 cut(s)	843
EcoT14I	CCWWGG	1 cut(s)	156
EcoT22I	ATGCAT	2 cut(s)	485, 991
ErhI	CCWWGG	1 cut(s)	156
FaeI	CATG	5 cut(s)	61, 535, 723, 936, 957
FaqI	GGGAC	3 cut(s)	128, 409, 666
FatI	CATG	5 cut(s)	57, 531, 719, 932, 953
Fnu4HI	GCNGC	8 cut(s)	149, 336, 339, 462, 505, 859, 898, 1082
FokI	GGATG	4 cut(s)	260, 687, 981, 998
Fsp4HI	GCNGC	8 cut(s)	149, 336, 339, 462, 505, 859, 898, 1082
FspBI	CTAG	4 cut(s)	75, 294, 443, 800
GlaI	GCGC	2 cut(s)	73, 1042
GluI	GCNGC	8 cut(s)	149, 336, 339, 462, 505, 859, 898, 1082
HaeII	RGCGCY	2 cut(s)	75, 1044
HaeIII	GGCC	6 cut(s)	50, 161, 300, 779, 924, 1052
HapII	CCGG	2 cut(s)	207, 569
HgaI	GACGC	2 cut(s)	372, 1067
HhaI	GCGC	2 cut(s)	74, 1043
Hin1I	GRCGYC	1 cut(s)	364
Hin1II	CATG	5 cut(s)	61, 535, 723, 936, 957
Hin6I	GCGC	2 cut(s)	72, 1041
HinP1I	GCGC	2 cut(s)	72, 1041
HincII	GTYRAC	1 cut(s)	608
HindII	GTYRAC	1 cut(s)	608
HinfI	GANTC	2 cut(s)	116, 584
HpaII	CCGG	2 cut(s)	207, 569
HphI	GGTGA	2 cut(s)	445, 461
Hpy166II	GTNNAC	4 cut(s)	200, 322, 436, 608
Hpy188I	TCNGA	1 cut(s)	1057
Hpy188III	TCNNGA	1 cut(s)	596
Hpy8I	GTNNAC	4 cut(s)	200, 322, 436, 608
HpyAV	CCTTC	1 cut(s)	637
HpyCH4III	ACNGT	4 cut(s)	37, 235, 421, 605
HpyCH4IV	ACGT	1 cut(s)	306
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 335, 1013, 1022, 1049, 1058
HpyF3I	CTNAG	5 cut(s)	249, 473, 490, 614, 1002
HpySE526I	ACGT	1 cut(s)	306
Hsp92I	GRCGYC	1 cut(s)	364
Hsp92II	CATG	5 cut(s)	61, 535, 723, 936, 957
HspAI	GCGC	2 cut(s)	72, 1041
LmnI	GCTCC	2 cut(s)	571, 635
Lsp1109I	GCAGC	7 cut(s)	135, 325, 347, 448, 516, 870, 884
LweI	GCATC	4 cut(s)	338, 665, 796, 976
MaeI	CTAG	4 cut(s)	75, 294, 443, 800
MaeII	ACGT	1 cut(s)	306
MaeIII	GTNAC	1 cut(s)	883
MboII	GAAGA	3 cut(s)	222, 811, 929
MfeI	CAATTG	1 cut(s)	368
MhlI	GDGCHC	1 cut(s)	96
MlsI	TGGCCA	3 cut(s)	161, 779, 924
MluNI	TGGCCA	3 cut(s)	161, 779, 924
MlyI	GAGTC	1 cut(s)	110
MmeI	TCCRAC	3 cut(s)	243, 475, 1022
Mox20I	TGGCCA	3 cut(s)	161, 779, 924
Mph1103I	ATGCAT	2 cut(s)	485, 991
MroXI	GAANNNNTTC	1 cut(s)	214
MscI	TGGCCA	3 cut(s)	161, 779, 924
MseI	TTAA	2 cut(s)	519, 1096
Msp20I	TGGCCA	3 cut(s)	161, 779, 924
MspA1I	CMGCKG	3 cut(s)	148, 338, 613
MspI	CCGG	2 cut(s)	207, 569
MspR9I	CCNGG	2 cut(s)	569, 845
MunI	CAATTG	1 cut(s)	368
MvaI	CCWGG	1 cut(s)	845
MwoI	GCNNNNNNNGC	6 cut(s)	11, 335, 1013, 1022, 1049, 1058
NciI	CCSGG	1 cut(s)	569
NlaIII	CATG	5 cut(s)	61, 535, 723, 936, 957
NlaIV	GGNNCC	1 cut(s)	715
NsiI	ATGCAT	2 cut(s)	485, 991
NspI	RCATGY	3 cut(s)	61, 723, 936
PciI	ACATGT	1 cut(s)	932
PdmI	GAANNNNTTC	1 cut(s)	214
PfeI	GAWTC	1 cut(s)	584
PfoI	TCCNGGA	1 cut(s)	843
PkrI	GCNGC	8 cut(s)	150, 337, 340, 463, 506, 860, 899, 1083
PleI	GAGTC	1 cut(s)	110
PpsI	GAGTC	1 cut(s)	110
PscI	ACATGT	1 cut(s)	932
Psp6I	CCWGG	1 cut(s)	843
PspGI	CCWGG	1 cut(s)	843
PspN4I	GGNNCC	1 cut(s)	715
PspPI	GGNCC	3 cut(s)	200, 454, 1050
PstI	CTGCAG	2 cut(s)	153, 337
PstNI	CAGNNNCTG	1 cut(s)	341
PvuII	CAGCTG	3 cut(s)	148, 338, 613
RsaI	GTAC	3 cut(s)	309, 626, 726
RsaNI	GTAC	3 cut(s)	308, 625, 725
SaqAI	TTAA	2 cut(s)	519, 1096
SatI	GCNGC	8 cut(s)	149, 336, 339, 462, 505, 859, 898, 1082
Sau96I	GGNCC	3 cut(s)	200, 454, 1050
SchI	GAGTC	1 cut(s)	110
ScrFI	CCNGG	2 cut(s)	569, 845
SduI	GDGCHC	1 cut(s)	96
SfaNI	GCATC	4 cut(s)	338, 665, 796, 976
SfcI	CTRYAG	2 cut(s)	149, 333
SinI	GGWCC	2 cut(s)	200, 454
SmlI	CTYRAG	1 cut(s)	767
SmoI	CTYRAG	1 cut(s)	767
SsiI	CCGC	5 cut(s)	5, 86, 552, 741, 1081
SspMI	CTAG	4 cut(s)	75, 294, 443, 800
StyD4I	CCNGG	2 cut(s)	567, 843
StyI	CCWWGG	1 cut(s)	156
TaaI	ACNGT	4 cut(s)	37, 235, 421, 605
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	1 cut(s)	1071
TaqII	GACCGA	1 cut(s)	217
TatI	WGTACW	1 cut(s)	624
TauI	GCSGC	1 cut(s)	1084
TfiI	GAWTC	1 cut(s)	584
Tru1I	TTAA	2 cut(s)	519, 1096
Tru9I	TTAA	2 cut(s)	519, 1096
TscAI	CASTG	3 cut(s)	424, 691, 780
TseI	GCWGC	7 cut(s)	148, 335, 338, 461, 504, 858, 897
TspDTI	ATGAA	5 cut(s)	94, 262, 520, 798, 983
TspGWI	ACGGA	1 cut(s)	237
TspRI	CASTG	3 cut(s)	424, 691, 780
VpaK11BI	GGWCC	2 cut(s)	200, 454
XapI	RAATTY	2 cut(s)	750, 785
XceI	RCATGY	3 cut(s)	61, 723, 936
XcmI	CCANNNNNNNNNTGG	1 cut(s)	755
XmnI	GAANNNNTTC	1 cut(s)	214
XspI	CTAG	4 cut(s)	75, 294, 443, 800
Zsp2I	ATGCAT	2 cut(s)	485, 991

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.