Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0014308

Physical Location & Seq

Genomic Coordinates Forward (+)

3805309 .. 3808373

Gene Structure 3065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g06610.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGTGGGAATGGTGAAGAGAAAGTGGGCGGTGTGTGTTGTGGTGTTGGTCTTGAACTTGGGGTGGTGCAATATTGGGGCAAGAGCTGAGCCACAAGTGCCTTGCTACTTCATCTTTGGGGATTCTTTGGTTGATAATGGCAACAACAACCAGCTTCAGTCCTTGGCTAGAGCTGATTACTTGCCTTATGGGATCGACTTCGGCGGACCAACCGGAAGATTTTCCAATGGGAAAACTATTGTTGATGTTGTTGCTGAGCTTTTGGGTTTTGATGATTACATTCCACCCTATGCAACTGCCAGAGACCAGCAGATACTCAAAGGAGTGAACTTTGCATCTGCAGCTGCTGGAATTAGAGAGGAAACCGGACGCCAACTGGGAGGTCGGATCACGTTTAGTGGTCAGGTAAGGAATTACCAGAACACAGTTTCCCAAGTGGTTAACTTGCTAGGCGATGAGGACACAGCTGCTAATTATCTGGGCAAATGCATGTACTCTATTGGATTAGGCAGCAATGACTACCTTAACAACTATTTCATGCCCCAATATTACAACACCGGAAATCAATATACCCCTGAGGAATATGCTACTTCTCTTATTCAGGACTACAGCAAGCAACTTCAGATTTTGTACAATTATGGTGCAAGGAAGGTTGTGTTGTTTGGAATTGGTCAAGTAGGTTGCAGCCCAAGTGAATTGGCTCAAAATAGCCCAGATGGCAAAACATGCGTAGCAAAGATAAACTCTGCAAACCAAATCTTCAATGGCAAGCTCAAGGCCCTTGCCAATGAGTTCAACACTAACTTCCCAGATGGAAGATTTATCTTCATAGACTCCTACGCCATTTTTGCGGACATAGTAAACAGCCCGGCACAATATGGATTTACGAATATAAATACAGGATGCTGTGGGGTGGGAAGGAACAATGGCCAAATCACATGTCTGCCTTACCAAACTCCTTGTGCAAATCGTGACGAGTATCTGTTTTGGGATGCATTCCATCCCACTGAAGCTGGAAATGCTGTGGTTGCGAGGAGATCATACAATGCTGTTCGTGCATCTGATGCATACCCAGTTGATATAGCCAGCCTAGCTGCGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0030312 GO:0031976 GO:0031984 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

368

Amino Acids

40.15

Weight (kDa)

5.18

Isoelectric Point (pI)

27.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	36 - 346	2e-40	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29670 AT1G29670 AT5G45670
fragaria_vesca	FvH4_3g06610
malus_domestica	MD00G1093600.v1.1 MD10G1270600.v1.1
prunus_persica	Prupe.4G071100_v2.0.a1
pyrus_communis	pycom05g27060 pycom10g22640
rosa_chinensis	RchiOBHm_Chr5g0012531
rosa_laevigata	RLG00000031922
rosa_multiflora	Rmu_sc0001889.1_g000034
rosa_roxburghii	Rroxscaffold_1G00064160
rosa_rugosa	Rorug05G0002200
rosa_samantha	Rh5AG096200 Rh5CG105300
rosa_wichuraiana	Rw5G008420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	29, 204, 851
AclWI	GGATC	2 cut(s)	200, 395
AcoI	YGGCCR	1 cut(s)	928
AcuI	CTGAAG	3 cut(s)	140, 605, 1029
AcyI	GRCGYC	1 cut(s)	370
AfaI	GTAC	2 cut(s)	494, 632
AflIII	ACRYGT	1 cut(s)	938
AgsI	TTSAA	3 cut(s)	55, 763, 796
AloI	GAACNNNNNNTCC	2 cut(s)	413, 445
AluBI	AGCT	9 cut(s)	86, 154, 173, 259, 344, 467, 772, 1013, 1094
AluI	AGCT	9 cut(s)	86, 154, 173, 259, 344, 467, 772, 1013, 1094
Alw26I	GTCTC	1 cut(s)	297
AlwI	GGATC	2 cut(s)	200, 395
AlwNI	CAGNNNCTG	1 cut(s)	347
AoxI	GGCC	2 cut(s)	777, 928
ApeKI	GCWGC	6 cut(s)	341, 344, 467, 510, 684, 1094
ArsI	GACNNNNNNTTYG	2 cut(s)	925, 957
Asp700I	GAANNNNTTC	1 cut(s)	220
AspLEI	GCGC	1 cut(s)	1099
AspS9I	GGNCC	2 cut(s)	206, 778
AsuC2I	CCSGG	1 cut(s)	869
AsuHPI	GGTGA	1 cut(s)	25
AvaII	GGWCC	1 cut(s)	206
AxyI	CCTNAGG	1 cut(s)	576
BalI	TGGCCA	1 cut(s)	930
BbvI	GCAGC	6 cut(s)	331, 353, 454, 522, 696, 1081
BccI	CCATC	3 cut(s)	710, 806, 1008
BcnI	CCSGG	1 cut(s)	869
BcoDI	GTCTC	1 cut(s)	297
BfaI	CTAG	4 cut(s)	168, 449, 1091, 1102
BfmI	CTRYAG	2 cut(s)	339, 607
BglI	GCCNNNNNGGC	1 cut(s)	717
BisI	GCNGC	6 cut(s)	342, 345, 468, 511, 685, 1095
BlpI	GCTNAGC	2 cut(s)	87, 255
BlsI	GCNGC	6 cut(s)	343, 346, 469, 512, 686, 1096
Bme1390I	CCNGG	1 cut(s)	869
Bme18I	GGWCC	1 cut(s)	206
BmgT120I	GGNCC	2 cut(s)	206, 778
BmrFI	CCNGG	1 cut(s)	869
BmrI	ACTGGG	2 cut(s)	386, 1067
BmsI	GCATC	5 cut(s)	344, 893, 982, 1054, 1067
BmuI	ACTGGG	2 cut(s)	386, 1067
Bpu1102I	GCTNAGC	2 cut(s)	87, 255
BpuEI	CTTGAG	1 cut(s)	758
BpuMI	CCSGG	1 cut(s)	869
BsaHI	GRCGYC	1 cut(s)	370
BsaI	GGTCTC	1 cut(s)	297
BsaJI	CCNNGG	1 cut(s)	162
BsaWI	WCCGGW	3 cut(s)	212, 365, 557
Bse1I	ACTGG	2 cut(s)	381, 1073
Bse21I	CCTNAGG	1 cut(s)	576
Bse3DI	GCAATG	1 cut(s)	520
BseDI	CCNNGG	1 cut(s)	162
BseGI	GGATG	3 cut(s)	908, 997, 1000
BseMI	GCAATG	1 cut(s)	520
BseMII	CTCAG	3 cut(s)	78, 246, 567
BseNI	ACTGG	2 cut(s)	381, 1073
BseRI	GAGGAG	1 cut(s)	1048
BseXI	GCAGC	6 cut(s)	331, 353, 454, 522, 696, 1081
BshFI	GGCC	2 cut(s)	779, 930
BsiSI	CCGG	4 cut(s)	213, 366, 558, 869
BsmAI	GTCTC	1 cut(s)	297
BsmI	GAATGC	1 cut(s)	995
BsnI	GGCC	2 cut(s)	779, 930
Bso31I	GGTCTC	1 cut(s)	297
Bsp1407I	TGTACA	1 cut(s)	630
Bsp143I	GATC	3 cut(s)	192, 387, 1037
Bsp1720I	GCTNAGC	2 cut(s)	87, 255
BspACI	CCGC	3 cut(s)	29, 204, 851
BspANI	GGCC	2 cut(s)	779, 930
BspCNI	CTCAG	3 cut(s)	79, 247, 568
BspMAI	CTGCAG	1 cut(s)	343
BspPI	GGATC	2 cut(s)	200, 395
BspTNI	GGTCTC	1 cut(s)	297
BsrDI	GCAATG	1 cut(s)	520
BsrGI	TGTACA	1 cut(s)	630
BsrI	ACTGG	2 cut(s)	381, 1073
BssECI	CCNNGG	1 cut(s)	162
BssMI	GATC	3 cut(s)	192, 387, 1037
BssNI	GRCGYC	1 cut(s)	370
BssT1I	CCWWGG	1 cut(s)	162
Bst4CI	ACNGT	1 cut(s)	427
Bst6I	CTCTTC	1 cut(s)	11
BstACI	GRCGYC	1 cut(s)	370
BstAPI	GCANNNNNTGC	2 cut(s)	726, 1064
BstAUI	TGTACA	1 cut(s)	630
BstC8I	GCNNGC	3 cut(s)	614, 770, 1087
BstDEI	CTNAG	3 cut(s)	87, 255, 576
BstF5I	GGATG	3 cut(s)	908, 997, 1000
BstHHI	GCGC	1 cut(s)	1099
BstKTI	GATC	3 cut(s)	195, 390, 1040
BstMAI	GTCTC	1 cut(s)	297
BstMBI	GATC	3 cut(s)	192, 387, 1037
BstNSI	RCATGY	3 cut(s)	493, 729, 942
BstSCI	CCNGG	1 cut(s)	867
BstSFI	CTRYAG	2 cut(s)	339, 607
BstV1I	GCAGC	6 cut(s)	331, 353, 454, 522, 696, 1081
Bsu36I	CCTNAGG	1 cut(s)	576
BsuRI	GGCC	2 cut(s)	779, 930
BtgZI	GCGATG	1 cut(s)	468
BtsCI	GGATG	3 cut(s)	908, 997, 1000
BtsIMutI	CAGTG	1 cut(s)	1005
Cac8I	GCNNGC	3 cut(s)	614, 770, 1087
CaiI	CAGNNNCTG	1 cut(s)	347
CfoI	GCGC	1 cut(s)	1099
Cfr13I	GGNCC	2 cut(s)	206, 778
CseI	GACGC	1 cut(s)	378
Csp6I	GTAC	2 cut(s)	493, 631
CviAII	CATG	4 cut(s)	490, 538, 726, 939
CviQI	GTAC	2 cut(s)	493, 631
DdeI	CTNAG	3 cut(s)	87, 255, 576
DpnI	GATC	3 cut(s)	194, 389, 1039
DpnII	GATC	3 cut(s)	192, 387, 1037
EaeI	YGGCCR	1 cut(s)	928
Eam1104I	CTCTTC	1 cut(s)	11
EarI	CTCTTC	1 cut(s)	11
EciI	GGCGGA	1 cut(s)	219
Eco130I	CCWWGG	1 cut(s)	162
Eco31I	GGTCTC	1 cut(s)	297
Eco47I	GGWCC	1 cut(s)	206
Eco57I	CTGAAG	3 cut(s)	140, 605, 1029
Eco81I	CCTNAGG	1 cut(s)	576
EcoO109I	RGGNCCY	1 cut(s)	778
EcoT14I	CCWWGG	1 cut(s)	162
EcoT22I	ATGCAT	3 cut(s)	491, 997, 1069
ErhI	CCWWGG	1 cut(s)	162
FaeI	CATG	4 cut(s)	493, 541, 729, 942
FatI	CATG	4 cut(s)	489, 537, 725, 938
Fnu4HI	GCNGC	6 cut(s)	342, 345, 468, 511, 685, 1095
FokI	GGATG	3 cut(s)	915, 987, 1004
Fsp4HI	GCNGC	6 cut(s)	342, 345, 468, 511, 685, 1095
FspBI	CTAG	4 cut(s)	168, 449, 1091, 1102
GlaI	GCGC	1 cut(s)	1098
GluI	GCNGC	6 cut(s)	342, 345, 468, 511, 685, 1095
HaeIII	GGCC	2 cut(s)	779, 930
HapII	CCGG	4 cut(s)	213, 366, 558, 869
HgaI	GACGC	1 cut(s)	378
HhaI	GCGC	1 cut(s)	1099
Hin1I	GRCGYC	1 cut(s)	370
Hin1II	CATG	4 cut(s)	493, 541, 729, 942
Hin6I	GCGC	1 cut(s)	1097
HinP1I	GCGC	1 cut(s)	1097
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HinfI	GANTC	2 cut(s)	122, 833
HpaI	GTTAAC	1 cut(s)	442
HpaII	CCGG	4 cut(s)	213, 366, 558, 869
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	3 cut(s)	328, 442, 862
Hpy188I	TCNGA	3 cut(s)	387, 624, 1063
Hpy188III	TCNNGA	3 cut(s)	52, 602, 971
Hpy8I	GTNNAC	3 cut(s)	328, 442, 862
HpyAV	CCTTC	2 cut(s)	643, 912
HpyCH4III	ACNGT	1 cut(s)	427
HpyCH4IV	ACGT	1 cut(s)	392
HpyF3I	CTNAG	3 cut(s)	87, 255, 576
HpySE526I	ACGT	1 cut(s)	392
Hsp92I	GRCGYC	1 cut(s)	370
Hsp92II	CATG	4 cut(s)	493, 541, 729, 942
HspAI	GCGC	1 cut(s)	1097
KspAI	GTTAAC	1 cut(s)	442
Kzo9I	GATC	3 cut(s)	192, 387, 1037
Lsp1109I	GCAGC	6 cut(s)	331, 353, 454, 522, 696, 1081
LweI	GCATC	5 cut(s)	344, 893, 982, 1054, 1067
MaeI	CTAG	4 cut(s)	168, 449, 1091, 1102
MaeII	ACGT	1 cut(s)	392
MaeIII	GTNAC	1 cut(s)	971
MalI	GATC	3 cut(s)	194, 389, 1039
MboI	GATC	3 cut(s)	192, 387, 1037
MboII	GAAGA	5 cut(s)	28, 228, 751, 817, 828
MlsI	TGGCCA	1 cut(s)	930
MluCI	AATT	6 cut(s)	351, 412, 472, 634, 666, 695
MluNI	TGGCCA	1 cut(s)	930
MlyI	GAGTC	1 cut(s)	827
MmeI	TCCRAC	1 cut(s)	365
MnlI	CCTC	5 cut(s)	352, 374, 451, 571, 1026
Mox20I	TGGCCA	1 cut(s)	930
Mph1103I	ATGCAT	3 cut(s)	491, 997, 1069
MroXI	GAANNNNTTC	1 cut(s)	220
MscI	TGGCCA	1 cut(s)	930
MseI	TTAA	2 cut(s)	441, 525
Msp20I	TGGCCA	1 cut(s)	930
MspA1I	CMGCKG	2 cut(s)	344, 467
MspI	CCGG	4 cut(s)	213, 366, 558, 869
MspR9I	CCNGG	1 cut(s)	869
Mva1269I	GAATGC	1 cut(s)	995
NciI	CCSGG	1 cut(s)	869
NdeII	GATC	3 cut(s)	192, 387, 1037
NlaIII	CATG	4 cut(s)	493, 541, 729, 942
NmuCI	GTSAC	1 cut(s)	971
NsiI	ATGCAT	3 cut(s)	491, 997, 1069
NspI	RCATGY	3 cut(s)	493, 729, 942
PciI	ACATGT	1 cut(s)	938
PctI	GAATGC	1 cut(s)	995
PdmI	GAANNNNTTC	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	122
PkrI	GCNGC	6 cut(s)	343, 346, 469, 512, 686, 1096
PleI	GAGTC	1 cut(s)	827
PpsI	GAGTC	1 cut(s)	827
PscI	ACATGT	1 cut(s)	938
PspPI	GGNCC	2 cut(s)	206, 778
PstI	CTGCAG	1 cut(s)	343
PstNI	CAGNNNCTG	1 cut(s)	347
PvuII	CAGCTG	2 cut(s)	344, 467
RsaI	GTAC	2 cut(s)	494, 632
RsaNI	GTAC	2 cut(s)	493, 631
SaqAI	TTAA	2 cut(s)	441, 525
SatI	GCNGC	6 cut(s)	342, 345, 468, 511, 685, 1095
Sau3AI	GATC	3 cut(s)	192, 387, 1037
Sau96I	GGNCC	2 cut(s)	206, 778
SchI	GAGTC	1 cut(s)	827
ScrFI	CCNGG	1 cut(s)	869
SfaNI	GCATC	5 cut(s)	344, 893, 982, 1054, 1067
SfcI	CTRYAG	2 cut(s)	339, 607
SinI	GGWCC	1 cut(s)	206
SmlI	CTYRAG	1 cut(s)	773
SmoI	CTYRAG	1 cut(s)	773
Sse9I	AATT	6 cut(s)	351, 412, 472, 634, 666, 695
SsiI	CCGC	3 cut(s)	29, 204, 851
SspI	AATATT	2 cut(s)	73, 548
SspMI	CTAG	4 cut(s)	168, 449, 1091, 1102
StyD4I	CCNGG	1 cut(s)	867
StyI	CCWWGG	1 cut(s)	162
TaaI	ACNGT	1 cut(s)	427
TaiI	ACGT	1 cut(s)	395
TaqI	TCGA	1 cut(s)	195
TasI	AATT	6 cut(s)	351, 412, 472, 634, 666, 695
TatI	WGTACW	2 cut(s)	492, 630
TfiI	GAWTC	1 cut(s)	122
Tru1I	TTAA	2 cut(s)	441, 525
Tru9I	TTAA	2 cut(s)	441, 525
TscAI	CASTG	1 cut(s)	1012
TseFI	GTSAC	1 cut(s)	971
TseI	GCWGC	6 cut(s)	341, 344, 467, 510, 684, 1094
Tsp45I	GTSAC	1 cut(s)	971
TspDTI	ATGAA	3 cut(s)	100, 526, 817
TspRI	CASTG	1 cut(s)	1012
VpaK11BI	GGWCC	1 cut(s)	206
XceI	RCATGY	3 cut(s)	493, 729, 942
XcmI	CCANNNNNNNNNTGG	1 cut(s)	761
XmnI	GAANNNNTTC	1 cut(s)	220
XspI	CTAG	4 cut(s)	168, 449, 1091, 1102
Zsp2I	ATGCAT	3 cut(s)	491, 997, 1069

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.