Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0014308

Physical Location & Seq

Genomic Coordinates Forward (+)

85988674 .. 85991820

Gene Structure 3147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00064160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGTGGGAATGGTGAAGAAAATGTGGGTGGTGTGTGTGGTGGTTTTGGTCTTGAACTTGGGGTGGTGCAATATTGGGGCAAGAGCTGAGCCACAAGTGCCTTGCTATTTCATTTTTGGGGATTCTTTGGTTGATAATGGCAACAACAACCAGCTTCAGTCCTTGGCTAGAGCTGATTACTTGCCTTATGGGATCGACTTCGGTGGACCAACTGGAAGATTTTCCAATGGGAAAACTACTGTTGATGTTGTTGCTGAGCTTTTGGGTTTTGATGATTACATTCCACCCTATGCAACTGCCAGAGGCCAACAAATACTCGGAGGAGTAAACTTTGCATCTGCAGCTGCTGGAATTAGAGAGGAAACTGGACGCCAACTGGGCGGTCGGATTACGTTTAGTGGTCAGGTAAGGAATTACCAAAACACAGTTTCCCAAGTGGTAAACTTGCTAGGAGATGAGGACACAGCTGCAAATTATCTGGCCAAATGCATATACTCTATTGGATTAGGCAGCAACGACTACCTTAACAACTATTTTATGCCCCAATATTACAACACCGGAAGTCAATACACTCCGGAGGAATATGCTACTTCTCTTATTCAGGATTACAGCCAGCAACTACGGCTTTTGTACAATTATGGTGCAAGGAAGGTTGTGTTGTTCGGAATTGGTCAAGTAGGTTGCAGTCCAAGTGAATTGGCTCAAAATAGTCCAGATGGAAATACATGCGTAGACAAGATAAACTCTGCAAACCAAATCTTCAATGGCAAGCTCAAGGCCCTTGCCAATGAGTTCAACACTAATTTCCCAGATGGAAGATTTATCTTCATAGACTCCTTTGGCATTTTTGAGGACATAGTAAAAAGCCCAGCACAATACGGATTTACGAATATAAATACAGGATGCTGTGGGGTGGGGAGGAACAATGGCCAAATCACATGTCTTCCTTACCAAACTCCTTGTTCAAATCGTAACGAGTATCTGTTTTGGGATGCATTCCATCCCACTGAAGCTGGAAATGCTGTGGTTGCTAGGAGATCATACAATGCTGTTCGTGCATCCGATGCTTACCCAGTTGATATAGCCAACCTAGCTGCGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0030312 GO:0031976 GO:0031984 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

367

Amino Acids

40.12

Weight (kDa)

4.94

Isoelectric Point (pI)

27.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	36 - 346	1.9e-40	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29670 AT1G29670 AT5G45670
fragaria_vesca	FvH4_3g06610
malus_domestica	MD00G1093600.v1.1 MD10G1270600.v1.1
prunus_persica	Prupe.4G071100_v2.0.a1
pyrus_communis	pycom05g27060 pycom10g22640
rosa_chinensis	RchiOBHm_Chr5g0012531
rosa_laevigata	RLG00000031922
rosa_multiflora	Rmu_sc0001889.1_g000034
rosa_roxburghii	Rroxscaffold_1G00064160
rosa_rugosa	Rorug05G0002200
rosa_samantha	Rh5AG096200 Rh5CG105300
rosa_wichuraiana	Rw5G008420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	732
AccIII	TCCGGA	1 cut(s)	574
AciI	CCGC	1 cut(s)	381
AclWI	GGATC	1 cut(s)	200
AcoI	YGGCCR	2 cut(s)	480, 928
AcuI	CTGAAG	2 cut(s)	140, 1029
AcyI	GRCGYC	1 cut(s)	370
AfaI	GTAC	1 cut(s)	632
AflIII	ACRYGT	1 cut(s)	938
AgsI	TTSAA	4 cut(s)	55, 763, 796, 966
AluBI	AGCT	9 cut(s)	86, 154, 173, 259, 344, 467, 772, 1013, 1094
AluI	AGCT	9 cut(s)	86, 154, 173, 259, 344, 467, 772, 1013, 1094
AlwI	GGATC	1 cut(s)	200
AlwNI	CAGNNNCTG	1 cut(s)	347
Aor13HI	TCCGGA	1 cut(s)	574
AoxI	GGCC	4 cut(s)	304, 480, 777, 928
ApeKI	GCWGC	5 cut(s)	341, 344, 467, 510, 1094
ArsI	GACNNNNNNTTYG	2 cut(s)	925, 957
Asp700I	GAANNNNTTC	1 cut(s)	220
AspLEI	GCGC	1 cut(s)	1099
AspS9I	GGNCC	2 cut(s)	206, 778
AsuHPI	GGTGA	1 cut(s)	25
AvaII	GGWCC	1 cut(s)	206
BalI	TGGCCA	2 cut(s)	482, 930
BbsI	GAAGAC	1 cut(s)	935
BbvI	GCAGC	5 cut(s)	331, 353, 454, 522, 1081
BccI	CCATC	3 cut(s)	710, 806, 1008
BceAI	ACGGC	1 cut(s)	638
BfaI	CTAG	5 cut(s)	168, 449, 1032, 1091, 1102
BfmI	CTRYAG	1 cut(s)	339
BglI	GCCNNNNNGGC	1 cut(s)	378
BisI	GCNGC	5 cut(s)	342, 345, 468, 511, 1095
BlpI	GCTNAGC	2 cut(s)	87, 255
BlsI	GCNGC	5 cut(s)	343, 346, 469, 512, 1096
Bme18I	GGWCC	1 cut(s)	206
BmgT120I	GGNCC	2 cut(s)	206, 778
BmrI	ACTGGG	2 cut(s)	386, 1067
BmsI	GCATC	5 cut(s)	344, 893, 982, 1054, 1067
BmuI	ACTGGG	2 cut(s)	386, 1067
BpiI	GAAGAC	1 cut(s)	935
Bpu1102I	GCTNAGC	2 cut(s)	87, 255
BpuEI	CTTGAG	1 cut(s)	758
BsaHI	GRCGYC	1 cut(s)	370
BsaJI	CCNNGG	1 cut(s)	162
BsaWI	WCCGGW	2 cut(s)	557, 574
Bse1I	ACTGG	4 cut(s)	217, 370, 381, 1073
BseAI	TCCGGA	1 cut(s)	574
BseDI	CCNNGG	1 cut(s)	162
BseGI	GGATG	4 cut(s)	908, 997, 1000, 1058
BseMII	CTCAG	2 cut(s)	78, 246
BseNI	ACTGG	4 cut(s)	217, 370, 381, 1073
BseRI	GAGGAG	1 cut(s)	336
BseXI	GCAGC	5 cut(s)	331, 353, 454, 522, 1081
BseYI	CCCAGC	1 cut(s)	868
Bsh1285I	CGRYCG	1 cut(s)	385
BshFI	GGCC	4 cut(s)	306, 482, 779, 930
BsiEI	CGRYCG	1 cut(s)	385
BsiSI	CCGG	2 cut(s)	558, 575
BsmI	GAATGC	1 cut(s)	995
BsnI	GGCC	4 cut(s)	306, 482, 779, 930
Bsp13I	TCCGGA	1 cut(s)	574
Bsp1407I	TGTACA	1 cut(s)	630
Bsp143I	GATC	2 cut(s)	192, 1037
Bsp1720I	GCTNAGC	2 cut(s)	87, 255
BspACI	CCGC	1 cut(s)	381
BspANI	GGCC	4 cut(s)	306, 482, 779, 930
BspCNI	CTCAG	2 cut(s)	79, 247
BspEI	TCCGGA	1 cut(s)	574
BspMAI	CTGCAG	1 cut(s)	343
BspPI	GGATC	1 cut(s)	200
BsrGI	TGTACA	1 cut(s)	630
BsrI	ACTGG	4 cut(s)	217, 370, 381, 1073
BssECI	CCNNGG	1 cut(s)	162
BssMI	GATC	2 cut(s)	192, 1037
BssNI	GRCGYC	1 cut(s)	370
BssT1I	CCWWGG	1 cut(s)	162
Bst4CI	ACNGT	2 cut(s)	241, 427
BstACI	GRCGYC	1 cut(s)	370
BstAPI	GCANNNNNTGC	1 cut(s)	1064
BstAUI	TGTACA	1 cut(s)	630
BstC8I	GCNNGC	2 cut(s)	614, 770
BstDEI	CTNAG	2 cut(s)	87, 255
BstF5I	GGATG	4 cut(s)	908, 997, 1000, 1058
BstHHI	GCGC	1 cut(s)	1099
BstKTI	GATC	2 cut(s)	195, 1040
BstMBI	GATC	2 cut(s)	192, 1037
BstMCI	CGRYCG	1 cut(s)	385
BstMWI	GCNNNNNNNGC	9 cut(s)	97, 341, 378, 622, 1019, 1028, 1055, 1064, 1091
BstNSI	RCATGY	2 cut(s)	729, 942
BstSFI	CTRYAG	1 cut(s)	339
BstV1I	GCAGC	5 cut(s)	331, 353, 454, 522, 1081
BstV2I	GAAGAC	1 cut(s)	935
BsuRI	GGCC	4 cut(s)	306, 482, 779, 930
BtsCI	GGATG	4 cut(s)	908, 997, 1000, 1058
BtsIMutI	CAGTG	1 cut(s)	1005
Cac8I	GCNNGC	2 cut(s)	614, 770
CaiI	CAGNNNCTG	1 cut(s)	347
CfoI	GCGC	1 cut(s)	1099
Cfr13I	GGNCC	2 cut(s)	206, 778
CseI	GACGC	1 cut(s)	378
Csp6I	GTAC	1 cut(s)	631
CviAII	CATG	2 cut(s)	726, 939
CviQI	GTAC	1 cut(s)	631
DdeI	CTNAG	2 cut(s)	87, 255
DpnI	GATC	2 cut(s)	194, 1039
DpnII	GATC	2 cut(s)	192, 1037
EaeI	YGGCCR	2 cut(s)	480, 928
Eco130I	CCWWGG	1 cut(s)	162
Eco47I	GGWCC	1 cut(s)	206
Eco57I	CTGAAG	2 cut(s)	140, 1029
EcoO109I	RGGNCCY	1 cut(s)	778
EcoT14I	CCWWGG	1 cut(s)	162
EcoT22I	ATGCAT	2 cut(s)	491, 997
ErhI	CCWWGG	1 cut(s)	162
FaeI	CATG	2 cut(s)	729, 942
FatI	CATG	2 cut(s)	725, 938
FblI	GTMKAC	1 cut(s)	732
Fnu4HI	GCNGC	5 cut(s)	342, 345, 468, 511, 1095
FokI	GGATG	4 cut(s)	915, 987, 1004, 1045
Fsp4HI	GCNGC	5 cut(s)	342, 345, 468, 511, 1095
FspBI	CTAG	5 cut(s)	168, 449, 1032, 1091, 1102
GlaI	GCGC	1 cut(s)	1098
GluI	GCNGC	5 cut(s)	342, 345, 468, 511, 1095
GsaI	CCCAGC	1 cut(s)	872
HaeIII	GGCC	4 cut(s)	306, 482, 779, 930
HapII	CCGG	2 cut(s)	558, 575
HgaI	GACGC	1 cut(s)	378
HhaI	GCGC	1 cut(s)	1099
Hin1I	GRCGYC	1 cut(s)	370
Hin1II	CATG	2 cut(s)	729, 942
Hin6I	GCGC	1 cut(s)	1097
HinP1I	GCGC	1 cut(s)	1097
HinfI	GANTC	2 cut(s)	122, 833
HpaII	CCGG	2 cut(s)	558, 575
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	4 cut(s)	206, 328, 442, 733
Hpy188I	TCNGA	4 cut(s)	320, 387, 665, 1063
Hpy188III	TCNNGA	4 cut(s)	52, 575, 602, 713
Hpy8I	GTNNAC	4 cut(s)	206, 328, 442, 733
HpyAV	CCTTC	1 cut(s)	643
HpyCH4III	ACNGT	2 cut(s)	241, 427
HpyCH4IV	ACGT	1 cut(s)	392
HpyF10VI	GCNNNNNNNGC	9 cut(s)	97, 341, 378, 622, 1019, 1028, 1055, 1064, 1091
HpyF3I	CTNAG	2 cut(s)	87, 255
HpySE526I	ACGT	1 cut(s)	392
Hsp92I	GRCGYC	1 cut(s)	370
Hsp92II	CATG	2 cut(s)	729, 942
HspAI	GCGC	1 cut(s)	1097
Kpn2I	TCCGGA	1 cut(s)	574
Kzo9I	GATC	2 cut(s)	192, 1037
Lsp1109I	GCAGC	5 cut(s)	331, 353, 454, 522, 1081
LweI	GCATC	5 cut(s)	344, 893, 982, 1054, 1067
MaeI	CTAG	5 cut(s)	168, 449, 1032, 1091, 1102
MaeII	ACGT	1 cut(s)	392
MaeIII	GTNAC	1 cut(s)	971
MalI	GATC	2 cut(s)	194, 1039
MboI	GATC	2 cut(s)	192, 1037
MboII	GAAGA	6 cut(s)	28, 228, 751, 817, 828, 935
MlsI	TGGCCA	2 cut(s)	482, 930
MluCI	AATT	7 cut(s)	351, 412, 472, 634, 666, 695, 802
MluNI	TGGCCA	2 cut(s)	482, 930
MlyI	GAGTC	1 cut(s)	827
MmeI	TCCRAC	1 cut(s)	365
MnlI	CCTC	7 cut(s)	296, 314, 352, 451, 571, 844, 912
Mox20I	TGGCCA	2 cut(s)	482, 930
Mph1103I	ATGCAT	2 cut(s)	491, 997
MroI	TCCGGA	1 cut(s)	574
MroXI	GAANNNNTTC	1 cut(s)	220
MscI	TGGCCA	2 cut(s)	482, 930
MseI	TTAA	1 cut(s)	525
Msp20I	TGGCCA	2 cut(s)	482, 930
MspA1I	CMGCKG	2 cut(s)	344, 467
MspI	CCGG	2 cut(s)	558, 575
Mva1269I	GAATGC	1 cut(s)	995
MwoI	GCNNNNNNNGC	9 cut(s)	97, 341, 378, 622, 1019, 1028, 1055, 1064, 1091
NdeII	GATC	2 cut(s)	192, 1037
NlaIII	CATG	2 cut(s)	729, 942
NsiI	ATGCAT	2 cut(s)	491, 997
NspI	RCATGY	2 cut(s)	729, 942
PciI	ACATGT	1 cut(s)	938
PctI	GAATGC	1 cut(s)	995
PdmI	GAANNNNTTC	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	122
PkrI	GCNGC	5 cut(s)	343, 346, 469, 512, 1096
PleI	GAGTC	1 cut(s)	827
PpsI	GAGTC	1 cut(s)	827
PscI	ACATGT	1 cut(s)	938
PspFI	CCCAGC	1 cut(s)	868
PspPI	GGNCC	2 cut(s)	206, 778
PstI	CTGCAG	1 cut(s)	343
PstNI	CAGNNNCTG	1 cut(s)	347
PvuII	CAGCTG	2 cut(s)	344, 467
RsaI	GTAC	1 cut(s)	632
RsaNI	GTAC	1 cut(s)	631
SaqAI	TTAA	1 cut(s)	525
SatI	GCNGC	5 cut(s)	342, 345, 468, 511, 1095
Sau3AI	GATC	2 cut(s)	192, 1037
Sau96I	GGNCC	2 cut(s)	206, 778
SchI	GAGTC	1 cut(s)	827
SfaNI	GCATC	5 cut(s)	344, 893, 982, 1054, 1067
SfcI	CTRYAG	1 cut(s)	339
SinI	GGWCC	1 cut(s)	206
SmlI	CTYRAG	1 cut(s)	773
SmoI	CTYRAG	1 cut(s)	773
Sse9I	AATT	7 cut(s)	351, 412, 472, 634, 666, 695, 802
SsiI	CCGC	1 cut(s)	381
SspI	AATATT	2 cut(s)	73, 548
SspMI	CTAG	5 cut(s)	168, 449, 1032, 1091, 1102
StyI	CCWWGG	1 cut(s)	162
TaaI	ACNGT	2 cut(s)	241, 427
TaiI	ACGT	1 cut(s)	395
TaqI	TCGA	1 cut(s)	195
TasI	AATT	7 cut(s)	351, 412, 472, 634, 666, 695, 802
TatI	WGTACW	1 cut(s)	630
TfiI	GAWTC	1 cut(s)	122
Tru1I	TTAA	1 cut(s)	525
Tru9I	TTAA	1 cut(s)	525
TscAI	CASTG	1 cut(s)	1012
TseI	GCWGC	5 cut(s)	341, 344, 467, 510, 1094
TspDTI	ATGAA	2 cut(s)	100, 817
TspGWI	ACGGA	1 cut(s)	894
TspRI	CASTG	1 cut(s)	1012
VpaK11BI	GGWCC	1 cut(s)	206
XceI	RCATGY	2 cut(s)	729, 942
XcmI	CCANNNNNNNNNTGG	1 cut(s)	761
XmiI	GTMKAC	1 cut(s)	732
XmnI	GAANNNNTTC	1 cut(s)	220
XspI	CTAG	5 cut(s)	168, 449, 1032, 1091, 1102
Zsp2I	ATGCAT	2 cut(s)	491, 997

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.