AT1G30050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014985
Physical Location & Seq
Forward (+)
10543022 .. 10544594
1573 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G30050.1

Sequence Viewer

Length: 1170 bp
ATGGCGTATCGGAGAAGACAAGGGATCACAAGAGCTTCAACATTCAAAGAAGACATCTATCATCAACCACCAGATCCCGATCACGGTGATCTCAAAGGTCACTCCAATGGCGGATCCTTCAGATCTTCTCAATCTTTCTCTTCTCATTCCTCCCTTGCCGCTCAAGCAATCCGTGCCTCCTCTCAGGCTCAAGGATTCACCGCTTACGAGGATAAGAGCGAGAGTCGTGGATTCTGGGGAATCTTAGCTCAGAAAGCTAAATCAATCCTTGAAGACGAAGAAGAGCAACAACAACAACAACAACAACAAAACGACGTCATTTTCGAGCCCTCGAATCCAACCATACGCAAAAGCATAGACAAGATCACAACGTCTCTGAATCATATCGGAGATAGTTTCGAGAAAGCGTTCGAGGAAGGTCGTACGATCGTAGCTTCACAAATCAGACGAAAAGGATCTGATCTAATCGATTCAGACAACAACAATTATCACCAATCCTCTGGATCAAGCAGTCCATGGCAACCACTAACACAACCAAACCCACGTGAGTCTCAACTCAAAGCGTCACGTGATGTAGCCATGGCTACAGCAGCTAAAGCCAAGCTTCTCCTCCGTGAATTGAAAACGGTTAAAGCCGATTTAGCTTTCGCTAAAGAACGTTGTTCTCAATTGGAAGAAGAAAACAAACGGTTAAGAGATAACCGGGATAAAGGTAACAACAATCCAGCTGATGATGACCTAATTAGGCTTCAGCTAGAGACATTGCTTGCAGAGAAAGCGAGATTAGCACACGAAAACTCTATTTACGCTAGAGAAAACCGATTCTTGAGAGAAATCGTCGAATATCATCAGTTAACAATGCAAGATGTTGTTTATATCGATGAAGGTATTGAAGAAGTTGCTGAAGTGAATCCTTCTATCACTAGAACGCTTTCTATGGCTTCGTATTCGGCTTCTGAATTGCCTTCGATCTCGCCTTCGCCTTCTTCCCCTGCTTCGCCTTCTCGGCTTTCGGTTTCTACAGACATTTATCCGATTTTGGTTCAGCAGAGTTCGACTAACGATATTACGGTTGAGAGTCCTAAACCGGTTCGACCACCTTCTTTGGGATACACAGATGATGGTAAGAGACCATCATCACAGCTACCATCGTCACAGCTCTCTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

389

Amino Acids

43.33

Weight (kDa)

5.73

Isoelectric Point (pI)

65.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014985)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30050
fragaria_vesca FvH4_6g09370
malus_domestica MD04G1178200.v1.1 MD12G1193800.v1.1
prunus_persica Prupe.6G298200_v2.0.a1
pyrus_communis pycom04g15720 pycom12g18000
rosa_chinensis RchiOBHm_Chr3g0459761
rosa_laevigata RLG00000025059
rosa_multiflora Rmu_sc0000240.1_g000037
rosa_roxburghii Rroxscaffold_6G00419980
rosa_rugosa Rorug03G0038100
rosa_samantha Rh3AG096700 Rh3BG099400 Rh3CG101300 Rh3DG100700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 318
AccBSI CCGCTC 1 cut(s) 161
AciI CCGC 3 cut(s) 111, 159, 201
AclI AACGTT 1 cut(s) 658
AclWI GGATC 6 cut(s) 32, 68, 108, 121, 463, 511
AcuI CTGAAG 3 cut(s) 103, 734, 924
AcvI CACGTG 2 cut(s) 545, 569
AcyI GRCGYC 1 cut(s) 315
AfaI GTAC 1 cut(s) 424
AfiI CCNNNNNNNGG 2 cut(s) 83, 1106
AgeI ACCGGT 1 cut(s) 1087
AgsI TTSAA 5 cut(s) 39, 46, 272, 622, 893
Alw26I GTCTC 4 cut(s) 378, 555, 752, 1123
AlwI GGATC 6 cut(s) 32, 68, 108, 121, 463, 511
ApeKI GCWGC 1 cut(s) 590
ArsI GACNNNNNNTTYG 2 cut(s) 305, 337
AsiGI ACCGGT 1 cut(s) 1087
Asp700I GAANNNNTTC 2 cut(s) 407, 931
AsuC2I CCSGG 1 cut(s) 704
AsuHPI GGTGA 3 cut(s) 98, 190, 482
BamHI GGATCC 1 cut(s) 113
BanII GRGCYC 1 cut(s) 330
BbrPI CACGTG 2 cut(s) 545, 569
BbsI GAAGAC 3 cut(s) 22, 57, 279
BbvI GCAGC 1 cut(s) 602
BccI CCATC 3 cut(s) 1115, 1141, 1156
BciVI GTATCC 1 cut(s) 1103
BcnI CCSGG 1 cut(s) 704
BcoDI GTCTC 4 cut(s) 378, 555, 752, 1123
BfaI CTAG 3 cut(s) 755, 810, 924
BfmI CTRYAG 2 cut(s) 585, 1020
BfuI GTATCC 1 cut(s) 1103
BglI GCCNNNNNGGC 1 cut(s) 1006
BglII AGATCT 1 cut(s) 122
BisI GCNGC 2 cut(s) 159, 591
BlsI GCNGC 2 cut(s) 160, 592
Bme1390I CCNGG 1 cut(s) 704
BmiI GGNNCC 1 cut(s) 115
BmrFI CCNGG 1 cut(s) 704
BpiI GAAGAC 3 cut(s) 22, 57, 279
BpuEI CTTGAG 3 cut(s) 147, 174, 847
BpuMI CCSGG 1 cut(s) 704
Bsa29I ATCGAT 2 cut(s) 468, 879
BsaAI YACGTR 2 cut(s) 545, 569
BsaBI GATNNNNATC 1 cut(s) 78
BsaHI GRCGYC 1 cut(s) 315
BsaI GGTCTC 1 cut(s) 1123
BsaJI CCNNGG 2 cut(s) 515, 579
BsaWI WCCGGW 1 cut(s) 1087
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 1106
Bse118I RCCGGY 1 cut(s) 1087
Bse3DI GCAATG 1 cut(s) 761
Bse8I GATNNNNATC 1 cut(s) 78
BseCI ATCGAT 2 cut(s) 468, 879
BseDI CCNNGG 2 cut(s) 515, 579
BseJI GATNNNNATC 1 cut(s) 78
BseLI CCNNNNNNNGG 2 cut(s) 83, 1106
BseMI GCAATG 1 cut(s) 761
BseMII CTCAG 2 cut(s) 197, 263
BseRI GAGGAG 2 cut(s) 169, 599
BseXI GCAGC 1 cut(s) 602
Bsh1285I CGRYCG 1 cut(s) 429
BshTI ACCGGT 1 cut(s) 1087
BshVI ATCGAT 2 cut(s) 468, 879
BsiEI CGRYCG 1 cut(s) 429
BsiSI CCGG 2 cut(s) 703, 1088
BsiWI CGTACG 1 cut(s) 422
BslI CCNNNNNNNGG 2 cut(s) 83, 1106
BsmAI GTCTC 4 cut(s) 378, 555, 752, 1123
BsmBI CGTCTC 1 cut(s) 378
Bso31I GGTCTC 1 cut(s) 1123
Bsp1286I GDGCHC 1 cut(s) 330
Bsp19I CCATGG 2 cut(s) 515, 579
BspACI CCGC 3 cut(s) 111, 159, 201
BspCNI CTCAG 2 cut(s) 196, 262
BspDI ATCGAT 2 cut(s) 468, 879
BspLI GGNNCC 1 cut(s) 115
BspPI GGATC 6 cut(s) 32, 68, 108, 121, 463, 511
BspQI GCTCTTC 1 cut(s) 276
BspTNI GGTCTC 1 cut(s) 1123
BsrBI CCGCTC 1 cut(s) 161
BsrDI GCAATG 1 cut(s) 761
BsrFI RCCGGY 1 cut(s) 1087
BssAI RCCGGY 1 cut(s) 1087
BssECI CCNNGG 2 cut(s) 515, 579
BssNI GRCGYC 1 cut(s) 315
BssT1I CCWWGG 2 cut(s) 515, 579
Bst4CI ACNGT 4 cut(s) 86, 628, 690, 1072
Bst6I CTCTTC 2 cut(s) 145, 276
BstACI GRCGYC 1 cut(s) 315
BstAPI GCANNNNNTGC 1 cut(s) 173
BstBAI YACGTR 2 cut(s) 545, 569
BstC8I GCNNGC 1 cut(s) 768
BstDEI CTNAG 3 cut(s) 183, 244, 249
BstDSI CCRYGG 2 cut(s) 515, 579
BstMAI GTCTC 4 cut(s) 378, 555, 752, 1123
BstMCI CGRYCG 1 cut(s) 429
BstMWI GCNNNNNNNGC 9 cut(s) 164, 173, 254, 590, 596, 641, 776, 785, 1006
BstSCI CCNGG 1 cut(s) 702
BstSFI CTRYAG 2 cut(s) 585, 1020
BstV1I GCAGC 1 cut(s) 602
BstV2I GAAGAC 3 cut(s) 22, 57, 279
BstX2I RGATCY 4 cut(s) 73, 113, 122, 455
BstXI CCANNNNNNTGG 1 cut(s) 500
BstYI RGATCY 4 cut(s) 73, 113, 122, 455
Bsu15I ATCGAT 2 cut(s) 468, 879
BsuI GTATCC 1 cut(s) 1103
BsuTUI ATCGAT 2 cut(s) 468, 879
BtgI CCRYGG 2 cut(s) 515, 579
Cac8I GCNNGC 1 cut(s) 768
Cfr10I RCCGGY 1 cut(s) 1087
ClaI ATCGAT 2 cut(s) 468, 879
CseI GACGC 1 cut(s) 552
Csp6I GTAC 1 cut(s) 423
CspAI ACCGGT 1 cut(s) 1087
CspCI CAANNNNNGTGG 2 cut(s) 1086, 1121
CviAII CATG 2 cut(s) 516, 580
CviQI GTAC 1 cut(s) 423
DdeI CTNAG 3 cut(s) 183, 244, 249
Eam1104I CTCTTC 2 cut(s) 145, 276
EarI CTCTTC 2 cut(s) 145, 276
EciI GGCGGA 1 cut(s) 126
Eco130I CCWWGG 2 cut(s) 515, 579
Eco24I GRGCYC 1 cut(s) 330
Eco31I GGTCTC 1 cut(s) 1123
Eco57I CTGAAG 3 cut(s) 103, 734, 924
Eco72I CACGTG 2 cut(s) 545, 569
EcoT14I CCWWGG 2 cut(s) 515, 579
EcoT38I GRGCYC 1 cut(s) 330
ErhI CCWWGG 2 cut(s) 515, 579
Esp3I CGTCTC 1 cut(s) 378
FaeI CATG 2 cut(s) 519, 583
FaiI YATR 7 cut(s) 344, 356, 384, 517, 581, 876, 938
FalI AAGNNNNNCTT 2 cut(s) 588, 620
FatI CATG 2 cut(s) 515, 579
Fnu4HI GCNGC 2 cut(s) 159, 591
FriOI GRGCYC 1 cut(s) 330
Fsp4HI GCNGC 2 cut(s) 159, 591
FspBI CTAG 3 cut(s) 755, 810, 924
GluI GCNGC 2 cut(s) 159, 591
HapII CCGG 2 cut(s) 703, 1088
HgaI GACGC 1 cut(s) 552
Hin1I GRCGYC 1 cut(s) 315
Hin1II CATG 2 cut(s) 519, 583
HincII GTYRAC 1 cut(s) 855
HindII GTYRAC 1 cut(s) 855
HindIII AAGCTT 1 cut(s) 602
HpaI GTTAAC 1 cut(s) 855
HpaII CCGG 2 cut(s) 703, 1088
HphI GGTGA 3 cut(s) 98, 190, 482
Hpy166II GTNNAC 1 cut(s) 855
Hpy188III TCNNGA 4 cut(s) 77, 400, 501, 826
Hpy8I GTNNAC 1 cut(s) 855
Hpy99I CGWCG 2 cut(s) 317, 842
HpyAV CCTTC 9 cut(s) 127, 410, 878, 924, 975, 987, 993, 1011, 1110
HpyCH4III ACNGT 4 cut(s) 86, 628, 690, 1072
HpyCH4IV ACGT 5 cut(s) 315, 371, 544, 568, 658
HpyCH4V TGCA 2 cut(s) 770, 862
HpyF10VI GCNNNNNNNGC 9 cut(s) 164, 173, 254, 590, 596, 641, 776, 785, 1006
HpyF3I CTNAG 3 cut(s) 183, 244, 249
HpySE526I ACGT 5 cut(s) 315, 371, 544, 568, 658
Hsp92I GRCGYC 1 cut(s) 315
Hsp92II CATG 2 cut(s) 519, 583
KspAI GTTAAC 1 cut(s) 855
LguI GCTCTTC 1 cut(s) 276
LpnPI CCDG 8 cut(s) 84, 170, 220, 486, 716, 738, 1005, 1101
Lsp1109I GCAGC 1 cut(s) 602
MaeI CTAG 3 cut(s) 755, 810, 924
MaeII ACGT 5 cut(s) 315, 371, 544, 568, 658
MaeIII GTNAC 4 cut(s) 98, 564, 713, 1152
MbiI CCGCTC 1 cut(s) 161
MfeI CAATTG 1 cut(s) 668
MflI RGATCY 4 cut(s) 73, 113, 122, 455
MhlI GDGCHC 1 cut(s) 330
MluCI AATT 5 cut(s) 484, 617, 668, 741, 959
MlyI GAGTC 3 cut(s) 232, 557, 1087
MmeI TCCRAC 1 cut(s) 362
MnlI CCTC 8 cut(s) 160, 187, 190, 202, 340, 406, 508, 620
MroXI GAANNNNTTC 2 cut(s) 407, 931
MseI TTAA 3 cut(s) 630, 692, 854
MslI CAYNNNNRTG 1 cut(s) 105
MspA1I CMGCKG 1 cut(s) 728
MspI CCGG 2 cut(s) 703, 1088
MspR9I CCNGG 1 cut(s) 704
MunI CAATTG 1 cut(s) 668
MwoI GCNNNNNNNGC 9 cut(s) 164, 173, 254, 590, 596, 641, 776, 785, 1006
NciI CCSGG 1 cut(s) 704
NcoI CCATGG 2 cut(s) 515, 579
NlaIII CATG 2 cut(s) 519, 583
NlaIV GGNNCC 1 cut(s) 115
NmeAIII GCCGAG 1 cut(s) 985
NmuCI GTSAC 3 cut(s) 98, 564, 1152
PciSI GCTCTTC 1 cut(s) 276
PcsI WCGNNNNNNNCGW 1 cut(s) 321
PdmI GAANNNNTTC 2 cut(s) 407, 931
PfeI GAWTC 8 cut(s) 195, 231, 240, 334, 379, 470, 822, 910
Pfl23II CGTACG 1 cut(s) 422
PinAI ACCGGT 1 cut(s) 1087
PkrI GCNGC 2 cut(s) 160, 592
Ple19I CGATCG 1 cut(s) 429
PleI GAGTC 3 cut(s) 231, 556, 1086
PmaCI CACGTG 2 cut(s) 545, 569
PmlI CACGTG 2 cut(s) 545, 569
PpsI GAGTC 3 cut(s) 231, 556, 1086
Ppu21I YACGTR 2 cut(s) 545, 569
Psp1406I AACGTT 1 cut(s) 658
PspCI CACGTG 2 cut(s) 545, 569
PspLI CGTACG 1 cut(s) 422
PspN4I GGNNCC 1 cut(s) 115
PsuI RGATCY 4 cut(s) 73, 113, 122, 455
PvuI CGATCG 1 cut(s) 429
PvuII CAGCTG 1 cut(s) 728
RsaI GTAC 1 cut(s) 424
RsaNI GTAC 1 cut(s) 423
RseI CAYNNNNRTG 1 cut(s) 105
SapI GCTCTTC 1 cut(s) 276
SaqAI TTAA 3 cut(s) 630, 692, 854
SatI GCNGC 2 cut(s) 159, 591
SchI GAGTC 3 cut(s) 232, 557, 1087
ScrFI CCNGG 1 cut(s) 704
SduI GDGCHC 1 cut(s) 330
SfcI CTRYAG 2 cut(s) 585, 1020
SmiMI CAYNNNNRTG 1 cut(s) 105
SmlI CTYRAG 3 cut(s) 162, 189, 826
SmoI CTYRAG 3 cut(s) 162, 189, 826
Sse9I AATT 5 cut(s) 484, 617, 668, 741, 959
SsiI CCGC 3 cut(s) 111, 159, 201
SspMI CTAG 3 cut(s) 755, 810, 924
StyD4I CCNGG 1 cut(s) 702
StyI CCWWGG 2 cut(s) 515, 579
TaaI ACNGT 4 cut(s) 86, 628, 690, 1072
TaiI ACGT 5 cut(s) 318, 374, 547, 571, 661
TasI AATT 5 cut(s) 484, 617, 668, 741, 959
TauI GCSGC 1 cut(s) 161
TfiI GAWTC 8 cut(s) 195, 231, 240, 334, 379, 470, 822, 910
Tru1I TTAA 3 cut(s) 630, 692, 854
Tru9I TTAA 3 cut(s) 630, 692, 854
TseFI GTSAC 3 cut(s) 98, 564, 1152
TseI GCWGC 1 cut(s) 590
Tsp45I GTSAC 3 cut(s) 98, 564, 1152
TspDTI ATGAA 1 cut(s) 897
TspGWI ACGGA 2 cut(s) 161, 602
XmnI GAANNNNTTC 2 cut(s) 407, 931
XspI CTAG 3 cut(s) 755, 810, 924
ZraI GACGTC 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.