Prupe.6G298200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0014985
Physical Location & Seq
Reverse (-)
27205165 .. 27208036
2872 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G298200.1

Sequence Viewer

Length: 1347 bp
ATGGCGTACAGAAGAAGGCAGGGGATGTCGAGGGCGTCAACTTTCAAGGAGGAGATTATCCATCGCCCGCCTGATGACAATTCTGCTTCCATTTTGCAATCTTCGTCTTCTTTCTCTGGTTCTTCATCTCTCGCTGCTCAGGCCATTCGTGCTTCCACTCTCTCCGCTGAGCGCAACAACAACCGATCCAAGGATTTTTCTGCATATGACGAATCGGCCACAAAAGCTGGGTTTTGGGGTGTTCTGGCTCGCAAAGCTAAAGCCATTCTTGATGAGGATGGTGAGTTTCTGCAAGATGATATGCTTGGAGGCGTCAGCTCACAGTCCTCCAATGCCTCCACTGGCACCCAGTTCCAACAACCCTATCTGTCATCTGACAACTCTATAAGAATGGAAAATCCTGCAATCCGCAAGGGCTTGGACAGAATCACAACTTCCCTCAATCAGCTTGGTGACACTTTCGAGAAGGCTTTTGAGGAAGGTCGTACGATTGTGGAGAACAAGACTGCCGACATCAAACTGCAAATTAAACGAAGGGGAGACCATCCTGAGGCACAAGCTTATTATGTGAACCAGAGCAATTCAGGGCAGCAGCCTAAGAACCCTGATACTCAACTCAAGGCATCACGCGACGTTGCAATGGCAACAGCTGCCAAAGCAAAATTACTTCTTCGGGAGCTGAAAACTGTTAAAGCAGATCTGGCTTTTGCAAAGGAACGATGTTCTCAACTAGAAGAAGAAAATAAACGCCATCGCGAGAATCGTGACAAGGGAAACCACCGAGCAGATGACGACTTGATCCGCCTTCAACTGGAGACACTGCTGGCGGAGAAGTCACGCTTAGCGAATGAGAATTCAGTTTATGCTCGCGAGAACCGGTTCCTGAGGGAAATTGTTGAATATCACCAGCTCACAATGCAGGATGTTGTGTATTTAGATGATGAAGAAGTTTCAGAAGTTTACCCCTTAACCAGCTCCACCGGGGTCTCCAGGATGCTTTCCATTTCCCCGCCCTCAACACCTCCTTCCCCGCCTCCAGAGGACCCTTCACCTGTAACCGCACCAGTTACTGAAGAAATATCACCTCTCCTCAACAAGCCACAAGAAAATAAAAATGTTTCTGCAAATGAGGCCACACCAAGTTCCAATATCTCAGGTCCTAATAGAGAAGATACTAAAACACCTTCTTCAGCAGAAGCAGCTACTAAATCACCTTCTGTAGCAGATGCTGACCCTAAAACACCTCCTACAGCAGAAGCTTCTTCGAAAACACCTCCTACAGCAGAAGCTTCTCCAAAAACACCTTCTGTAGCGGAAGATACGAAAAGACCTCGAGCTTCTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

449

Amino Acids

49.05

Weight (kDa)

5.68

Isoelectric Point (pI)

58.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014985)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30050
fragaria_vesca FvH4_6g09370
malus_domestica MD04G1178200.v1.1 MD12G1193800.v1.1
prunus_persica Prupe.6G298200_v2.0.a1
pyrus_communis pycom04g15720 pycom12g18000
rosa_chinensis RchiOBHm_Chr3g0459761
rosa_laevigata RLG00000025059
rosa_multiflora Rmu_sc0000240.1_g000037
rosa_roxburghii Rroxscaffold_6G00419980
rosa_rugosa Rorug03G0038100
rosa_samantha Rh3AG096700 Rh3BG099400 Rh3CG101300 Rh3DG100700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 344
AccII CGCG 3 cut(s) 630, 756, 870
AciI CCGC 9 cut(s) 68, 165, 409, 802, 827, 1010, 1031, 1059, 1313
AclWI GGATC 2 cut(s) 180, 793
AcoI YGGCCR 1 cut(s) 216
AcsI RAATTY 1 cut(s) 853
AcuI CTGAAG 2 cut(s) 1092, 1173
AcyI GRCGYC 2 cut(s) 35, 312
AfaI GTAC 2 cut(s) 8, 487
AfiI CCNNNNNNNGG 3 cut(s) 190, 550, 811
AgeI ACCGGT 1 cut(s) 876
AgsI TTSAA 3 cut(s) 46, 809, 899
AjnI CCWGG 1 cut(s) 989
AjuI GAANNNNNNNTTGG 2 cut(s) 1288, 1320
Alw26I GTCTC 3 cut(s) 534, 809, 991
AlwI GGATC 2 cut(s) 180, 793
AlwNI CAGNNNCTG 2 cut(s) 1070, 1229
Ama87I CYCGRG 1 cut(s) 1332
AoxI GGCC 3 cut(s) 141, 216, 1131
ApeKI GCWGC 5 cut(s) 134, 589, 592, 650, 1199
ApoI RAATTY 1 cut(s) 853
AsiGI ACCGGT 1 cut(s) 876
Asp700I GAANNNNTTC 1 cut(s) 878
AspLEI GCGC 1 cut(s) 174
AspS9I GGNCC 2 cut(s) 1042, 1157
AsuC2I CCSGG 1 cut(s) 982
AsuHPI GGTGA 6 cut(s) 293, 464, 896, 1041, 1074, 1203
AsuII TTCGAA 1 cut(s) 1265
AvaI CYCGRG 1 cut(s) 1332
AvaII GGWCC 2 cut(s) 1042, 1157
AxyI CCTNAGG 2 cut(s) 549, 884
BanI GGYRCC 1 cut(s) 344
BbsI GAAGAC 1 cut(s) 99
BbvI GCAGC 5 cut(s) 121, 601, 604, 637, 1211
BccI CCATC 4 cut(s) 69, 272, 552, 759
BciT130I CCWGG 1 cut(s) 991
BcnI CCSGG 1 cut(s) 982
BcoDI GTCTC 3 cut(s) 534, 809, 991
BfaI CTAG 1 cut(s) 731
BfmI CTRYAG 4 cut(s) 1218, 1248, 1278, 1308
BglII AGATCT 1 cut(s) 697
BisI GCNGC 5 cut(s) 135, 590, 593, 651, 1200
BlpI GCTNAGC 2 cut(s) 168, 841
BlsI GCNGC 5 cut(s) 136, 591, 594, 652, 1201
Bme1390I CCNGG 2 cut(s) 982, 991
Bme18I GGWCC 2 cut(s) 1042, 1157
BmeT110I CYCGRG 1 cut(s) 1332
BmgT120I GGNCC 2 cut(s) 1042, 1157
BmiI GGNNCC 3 cut(s) 346, 881, 1044
BmrFI CCNGG 2 cut(s) 982, 991
BmrI ACTGGG 1 cut(s) 343
BmsI GCATC 3 cut(s) 632, 984, 1216
BmuI ACTGGG 1 cut(s) 343
BpiI GAAGAC 1 cut(s) 99
BpmI CTGGAG 3 cut(s) 833, 973, 1020
Bpu10I CCTNAGC 1 cut(s) 138
Bpu1102I GCTNAGC 2 cut(s) 168, 841
Bpu14I TTCGAA 1 cut(s) 1265
BpuEI CTTGAG 1 cut(s) 602
BpuMI CCSGG 1 cut(s) 982
BsaHI GRCGYC 2 cut(s) 35, 312
BsaI GGTCTC 2 cut(s) 534, 991
BsaJI CCNNGG 2 cut(s) 189, 981
BsaWI WCCGGW 1 cut(s) 876
Bsc4I CCNNNNNNNGG 3 cut(s) 190, 550, 811
Bse118I RCCGGY 1 cut(s) 876
Bse1I ACTGG 4 cut(s) 346, 349, 816, 1064
Bse21I CCTNAGG 2 cut(s) 549, 884
Bse3DI GCAATG 1 cut(s) 645
BseBI CCWGG 1 cut(s) 991
BseDI CCNNGG 2 cut(s) 189, 981
BseGI GGATG 5 cut(s) 30, 283, 544, 928, 999
BseLI CCNNNNNNNGG 3 cut(s) 190, 550, 811
BseMI GCAATG 1 cut(s) 645
BseMII CTCAG 5 cut(s) 152, 159, 540, 875, 1167
BseNI ACTGG 4 cut(s) 346, 349, 816, 1064
BseRI GAGGAG 2 cut(s) 65, 1079
BseXI GCAGC 5 cut(s) 121, 601, 604, 637, 1211
BseYI CCCAGC 1 cut(s) 227
Bsh1236I CGCG 3 cut(s) 630, 756, 870
BshFI GGCC 3 cut(s) 143, 218, 1133
BshNI GGYRCC 1 cut(s) 344
BshTI ACCGGT 1 cut(s) 876
BsiHKCI CYCGRG 1 cut(s) 1332
BsiSI CCGG 2 cut(s) 877, 981
BsiWI CGTACG 1 cut(s) 485
BslI CCNNNNNNNGG 3 cut(s) 190, 550, 811
BsmAI GTCTC 3 cut(s) 534, 809, 991
BsnI GGCC 3 cut(s) 143, 218, 1133
Bso31I GGTCTC 2 cut(s) 534, 991
BsoBI CYCGRG 1 cut(s) 1332
Bsp119I TTCGAA 1 cut(s) 1265
Bsp143I GATC 3 cut(s) 185, 697, 798
Bsp1720I GCTNAGC 2 cut(s) 168, 841
Bsp68I TCGCGA 2 cut(s) 756, 870
BspACI CCGC 9 cut(s) 68, 165, 409, 802, 827, 1010, 1031, 1059, 1313
BspANI GGCC 3 cut(s) 143, 218, 1133
BspCNI CTCAG 5 cut(s) 151, 160, 541, 876, 1166
BspFNI CGCG 3 cut(s) 630, 756, 870
BspLI GGNNCC 3 cut(s) 346, 881, 1044
BspPI GGATC 2 cut(s) 180, 793
BspT104I TTCGAA 1 cut(s) 1265
BspT107I GGYRCC 1 cut(s) 344
BspTNI GGTCTC 2 cut(s) 534, 991
BsrDI GCAATG 1 cut(s) 645
BsrFI RCCGGY 1 cut(s) 876
BsrI ACTGG 4 cut(s) 346, 349, 816, 1064
BssAI RCCGGY 1 cut(s) 876
BssECI CCNNGG 2 cut(s) 189, 981
BssMI GATC 3 cut(s) 185, 697, 798
BssNI GRCGYC 2 cut(s) 35, 312
BssT1I CCWWGG 1 cut(s) 189
Bst2UI CCWGG 1 cut(s) 991
Bst4CI ACNGT 2 cut(s) 324, 688
BstACI GRCGYC 2 cut(s) 35, 312
BstAPI GCANNNNNTGC 1 cut(s) 650
BstBI TTCGAA 1 cut(s) 1265
BstC8I GCNNGC 4 cut(s) 68, 250, 825, 868
BstDEI CTNAG 7 cut(s) 138, 168, 549, 597, 841, 884, 1153
BstF5I GGATG 5 cut(s) 30, 283, 544, 928, 999
BstFNI CGCG 3 cut(s) 630, 756, 870
BstHHI GCGC 1 cut(s) 174
BstKTI GATC 3 cut(s) 188, 700, 801
BstMAI GTCTC 3 cut(s) 534, 809, 991
BstMBI GATC 3 cut(s) 185, 697, 798
BstNI CCWGG 1 cut(s) 991
BstSCI CCNGG 2 cut(s) 980, 989
BstSFI CTRYAG 4 cut(s) 1218, 1248, 1278, 1308
BstUI CGCG 3 cut(s) 630, 756, 870
BstV1I GCAGC 5 cut(s) 121, 601, 604, 637, 1211
BstV2I GAAGAC 1 cut(s) 99
BstX2I RGATCY 1 cut(s) 697
BstYI RGATCY 1 cut(s) 697
Bsu36I CCTNAGG 2 cut(s) 549, 884
BsuRI GGCC 3 cut(s) 143, 218, 1133
BtgZI GCGATG 2 cut(s) 47, 737
BtsCI GGATG 5 cut(s) 30, 283, 544, 928, 999
BtsI GCAGTG 1 cut(s) 818
BtsIMutI CAGTG 2 cut(s) 339, 818
BtuMI TCGCGA 2 cut(s) 756, 870
Cac8I GCNNGC 4 cut(s) 68, 250, 825, 868
CaiI CAGNNNCTG 2 cut(s) 1070, 1229
CfoI GCGC 1 cut(s) 174
Cfr10I RCCGGY 1 cut(s) 876
Cfr13I GGNCC 2 cut(s) 1042, 1157
CseI GACGC 2 cut(s) 24, 301
Csp6I GTAC 2 cut(s) 7, 486
CspAI ACCGGT 1 cut(s) 876
CviQI GTAC 2 cut(s) 7, 486
DdeI CTNAG 7 cut(s) 138, 168, 549, 597, 841, 884, 1153
DpnI GATC 3 cut(s) 187, 699, 800
DpnII GATC 3 cut(s) 185, 697, 798
EaeI YGGCCR 1 cut(s) 216
EciI GGCGGA 2 cut(s) 791, 842
Eco130I CCWWGG 1 cut(s) 189
Eco31I GGTCTC 2 cut(s) 534, 991
Eco47I GGWCC 2 cut(s) 1042, 1157
Eco57I CTGAAG 2 cut(s) 1092, 1173
Eco81I CCTNAGG 2 cut(s) 549, 884
Eco88I CYCGRG 1 cut(s) 1332
EcoO109I RGGNCCY 2 cut(s) 1042, 1157
EcoRI GAATTC 1 cut(s) 853
EcoRII CCWGG 1 cut(s) 989
EcoT14I CCWWGG 1 cut(s) 189
ErhI CCWWGG 1 cut(s) 189
FaiI YATR 7 cut(s) 205, 207, 302, 386, 567, 864, 1345
FalI AAGNNNNNCTT 4 cut(s) 252, 284, 824, 856
FauI CCCGC 3 cut(s) 75, 1017, 1038
FauNDI CATATG 1 cut(s) 205
Fnu4HI GCNGC 5 cut(s) 135, 590, 593, 651, 1200
FokI GGATG 5 cut(s) 37, 290, 531, 935, 1006
Fsp4HI GCNGC 5 cut(s) 135, 590, 593, 651, 1200
FspBI CTAG 1 cut(s) 731
GlaI GCGC 1 cut(s) 173
GluI GCNGC 5 cut(s) 135, 590, 593, 651, 1200
GsaI CCCAGC 1 cut(s) 231
GsuI CTGGAG 3 cut(s) 833, 973, 1020
HaeIII GGCC 3 cut(s) 143, 218, 1133
HapII CCGG 2 cut(s) 877, 981
HgaI GACGC 2 cut(s) 24, 301
HhaI GCGC 1 cut(s) 174
Hin1I GRCGYC 2 cut(s) 35, 312
Hin6I GCGC 1 cut(s) 172
HinP1I GCGC 1 cut(s) 172
HincII GTYRAC 1 cut(s) 39
HindII GTYRAC 1 cut(s) 39
HindIII AAGCTT 3 cut(s) 558, 1257, 1287
HinfI GANTC 3 cut(s) 212, 426, 760
HpaII CCGG 2 cut(s) 877, 981
HphI GGTGA 6 cut(s) 293, 464, 896, 1041, 1074, 1203
Hpy166II GTNNAC 3 cut(s) 39, 571, 961
Hpy188I TCNGA 2 cut(s) 376, 955
Hpy188III TCNNGA 9 cut(s) 269, 463, 548, 674, 755, 764, 869, 883, 1037
Hpy8I GTNNAC 3 cut(s) 39, 571, 961
Hpy99I CGWCG 1 cut(s) 635
HpyCH4III ACNGT 2 cut(s) 324, 688
HpyCH4IV ACGT 1 cut(s) 633
HpyF3I CTNAG 7 cut(s) 138, 168, 549, 597, 841, 884, 1153
HpySE526I ACGT 1 cut(s) 633
Hsp92I GRCGYC 2 cut(s) 35, 312
HspAI GCGC 1 cut(s) 172
Kzo9I GATC 3 cut(s) 185, 697, 798
LmnI GCTCC 2 cut(s) 676, 980
Lsp1109I GCAGC 5 cut(s) 121, 601, 604, 637, 1211
LweI GCATC 3 cut(s) 632, 984, 1216
MaeI CTAG 1 cut(s) 731
MaeII ACGT 1 cut(s) 633
MaeIII GTNAC 5 cut(s) 452, 764, 834, 1054, 1066
MalI GATC 3 cut(s) 187, 699, 800
MboI GATC 3 cut(s) 185, 697, 798
MflI RGATCY 1 cut(s) 697
MluCI AATT 6 cut(s) 79, 525, 580, 662, 853, 891
MmeI TCCRAC 1 cut(s) 379
MroXI GAANNNNTTC 1 cut(s) 878
MseI TTAA 3 cut(s) 528, 690, 968
MspA1I CMGCKG 2 cut(s) 167, 650
MspI CCGG 2 cut(s) 877, 981
MspR9I CCNGG 2 cut(s) 982, 991
MvaI CCWGG 1 cut(s) 991
MvnI CGCG 3 cut(s) 630, 756, 870
NciI CCSGG 1 cut(s) 982
NdeI CATATG 1 cut(s) 205
NdeII GATC 3 cut(s) 185, 697, 798
NlaIV GGNNCC 3 cut(s) 346, 881, 1044
NmuCI GTSAC 3 cut(s) 452, 764, 834
NruI TCGCGA 2 cut(s) 756, 870
NspV TTCGAA 1 cut(s) 1265
PaeR7I CTCGAG 1 cut(s) 1332
PcsI WCGNNNNNNNCGW 1 cut(s) 760
PdmI GAANNNNTTC 1 cut(s) 878
PfeI GAWTC 3 cut(s) 212, 426, 760
Pfl23II CGTACG 1 cut(s) 485
PfoI TCCNGGA 1 cut(s) 989
PinAI ACCGGT 1 cut(s) 876
PkrI GCNGC 5 cut(s) 136, 591, 594, 652, 1201
PpuMI RGGWCCY 2 cut(s) 1042, 1157
Psp5II RGGWCCY 2 cut(s) 1042, 1157
Psp6I CCWGG 1 cut(s) 989
PspFI CCCAGC 1 cut(s) 227
PspGI CCWGG 1 cut(s) 989
PspLI CGTACG 1 cut(s) 485
PspN4I GGNNCC 3 cut(s) 346, 881, 1044
PspPI GGNCC 2 cut(s) 1042, 1157
PspPPI RGGWCCY 2 cut(s) 1042, 1157
PspXI VCTCGAGB 1 cut(s) 1332
PstNI CAGNNNCTG 2 cut(s) 1070, 1229
PsuI RGATCY 1 cut(s) 697
PvuII CAGCTG 1 cut(s) 650
RruI TCGCGA 2 cut(s) 756, 870
RsaI GTAC 2 cut(s) 8, 487
RsaNI GTAC 2 cut(s) 7, 486
SaqAI TTAA 3 cut(s) 528, 690, 968
SatI GCNGC 5 cut(s) 135, 590, 593, 651, 1200
Sau3AI GATC 3 cut(s) 185, 697, 798
Sau96I GGNCC 2 cut(s) 1042, 1157
ScrFI CCNGG 2 cut(s) 982, 991
SfaNI GCATC 3 cut(s) 632, 984, 1216
SfcI CTRYAG 4 cut(s) 1218, 1248, 1278, 1308
Sfr274I CTCGAG 1 cut(s) 1332
SfuI TTCGAA 1 cut(s) 1265
SinI GGWCC 2 cut(s) 1042, 1157
SlaI CTCGAG 1 cut(s) 1332
SmlI CTYRAG 2 cut(s) 617, 1332
SmoI CTYRAG 2 cut(s) 617, 1332
Sse9I AATT 6 cut(s) 79, 525, 580, 662, 853, 891
SsiI CCGC 9 cut(s) 68, 165, 409, 802, 827, 1010, 1031, 1059, 1313
SspMI CTAG 1 cut(s) 731
StyD4I CCNGG 2 cut(s) 980, 989
StyI CCWWGG 1 cut(s) 189
TaaI ACNGT 2 cut(s) 324, 688
TaiI ACGT 1 cut(s) 636
TaqI TCGA 4 cut(s) 29, 462, 1265, 1333
TasI AATT 6 cut(s) 79, 525, 580, 662, 853, 891
TfiI GAWTC 3 cut(s) 212, 426, 760
Tru1I TTAA 3 cut(s) 528, 690, 968
Tru9I TTAA 3 cut(s) 528, 690, 968
TscAI CASTG 2 cut(s) 346, 825
TseFI GTSAC 3 cut(s) 452, 764, 834
TseI GCWGC 5 cut(s) 134, 589, 592, 650, 1199
Tsp45I GTSAC 3 cut(s) 452, 764, 834
TspDTI ATGAA 2 cut(s) 114, 957
TspRI CASTG 2 cut(s) 346, 825
VpaK11BI GGWCC 2 cut(s) 1042, 1157
XapI RAATTY 1 cut(s) 853
XhoI CTCGAG 1 cut(s) 1332
XmnI GAANNNNTTC 1 cut(s) 878
XspI CTAG 1 cut(s) 731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.