Rh3AG096700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0014985
Physical Location & Seq
Forward (+)
8057515 .. 8059725
2211 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG096700.1

Sequence Viewer

Length: 1281 bp
ATGGCGTACAGGAGAAGGCAGGGGATGACAAGAGCCTCTACTTTCAAAGAAGAGGTTGTTCATCGCCCACCGGACGATATCAATCCATCTGCTTCCCCTCTGCAATCTTCCAATTCATTTTCTGCTTCTTCGTCTCTTGCTGCTCAGGCCATACGTGCCTCTGCTCTATCAAATGAAAGAAATCGAACCAAGGACTTTGCAGCGTATGAAGATTCGTCAGCAAAATCCGGGTTTTGGGGTGTTCTGGCTCGAAAAGCCAAGGCGATTCTTGAAGAGGAGGATGCTGAATTTCAGCAAAATAATGTGTCTGGCGGGATCAGATCATCACAGCTCAACACTACCTCCAGTGGCCCCAACCAGTTTCAACAACAATATCAGTCATCTGATAACAGAATGGAACATCCTGCATTCCGCAAGGGCTTGGATAGAATCACGACTTCCCTTAATCAACTTGGTGACACATTTGAGAAGGCTTTTGAGGAAGGTCGTACGATTGTGGAGAATAAAACTGCCGACATCAGACATCAAATTCAACGAAGAGGAGACCACCCTGAGGGACAAAATCAAGCTTCTTATTATGGCATCAAACAAACTAGGAGTCCTGATACTCAAATCAAGGCATCTCGCGACGTTGCAATGGCAACGGCTGCCAAAGCAAAATTACTTCTTCGGGAGCTGAAAACTGTTAAAGCCGATCTGGCTTTTGCCAAGGAAAGATGTTCTCAACTAGAAGAAGAAAATAAACGCCTTCGCGACAGTCGTGAGAAGGGAGTAAACCGAGCGGATGATGACTTGATTCGCCACCAATTGGAGACTCTTTTGGCCGAGAAGGGTCGATTAGCCAGTGAGAATTCAGTTTATGCACGAGAGAACCGTTTCCTGAGGGAAGTTGTAGAATACCATCAACTCACAATGCAAGATGTTGTGTATTTATCTGACGAAGAAACAGAAGTTTACCCCCTATGTTCCCTTTCTCCGCGCTCATCACCACCTCCATCCCCACCGCCAGAGGACCTTTCATCTAGGATCACACCAGTTACCAAGGAAATACTTTCTGCCCACATTAACCCCCAAGCGAATAATGATGCTTCTCGAAATGAGGTCACACCAAGTTCAGATTTCTCACCTTCTGTAGCAGAGGAAGCTAAAACACCTTCTGTAGCAGAGGAAGGTAAAACAGATTCTGTAGCAGAAGAAAGTAAAATAGATTCTGTAGCAGAAAACAGTAAAACAGATTCTGTAGCAGAAGACACTAAAAGACCCCCTGCATCTTCTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

426

Amino Acids

47.27

Weight (kDa)

5.63

Isoelectric Point (pI)

59.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014985)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30050
fragaria_vesca FvH4_6g09370
malus_domestica MD04G1178200.v1.1 MD12G1193800.v1.1
prunus_persica Prupe.6G298200_v2.0.a1
pyrus_communis pycom04g15720 pycom12g18000
rosa_chinensis RchiOBHm_Chr3g0459761
rosa_laevigata RLG00000025059
rosa_multiflora Rmu_sc0000240.1_g000037
rosa_roxburghii Rroxscaffold_6G00419980
rosa_rugosa Rorug03G0038100
rosa_samantha Rh3AG096700 Rh3BG099400 Rh3CG101300 Rh3DG100700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 808
AccBSI CCGCTC 1 cut(s) 782
AccII CGCG 3 cut(s) 627, 753, 979
AciI CCGC 5 cut(s) 312, 412, 782, 977, 1004
AclWI GGATC 2 cut(s) 323, 1034
AcoI YGGCCR 1 cut(s) 822
AcsI RAATTY 3 cut(s) 287, 528, 850
AfaI GTAC 2 cut(s) 8, 490
AfiI CCNNNNNNNGG 3 cut(s) 234, 553, 808
AgsI TTSAA 4 cut(s) 46, 272, 365, 533
AluBI AGCT 4 cut(s) 331, 569, 676, 1145
AluI AGCT 4 cut(s) 331, 569, 676, 1145
Alw26I GTCTC 3 cut(s) 138, 537, 806
AlwI GGATC 2 cut(s) 323, 1034
AlwNI CAGNNNCTG 2 cut(s) 1184, 1238
AoxI GGCC 3 cut(s) 147, 349, 822
ApeKI GCWGC 3 cut(s) 140, 200, 647
ApoI RAATTY 3 cut(s) 287, 528, 850
ArsI GACNNNNNNTTYG 2 cut(s) 583, 615
Asp700I GAANNNNTTC 1 cut(s) 875
AspLEI GCGC 1 cut(s) 981
AspS9I GGNCC 2 cut(s) 350, 1012
AsuC2I CCSGG 1 cut(s) 229
AsuHPI GGTGA 3 cut(s) 467, 978, 1116
AvaII GGWCC 1 cut(s) 1012
AxyI CCTNAGG 2 cut(s) 552, 881
BauI CACGAG 1 cut(s) 864
BbsI GAAGAC 1 cut(s) 1254
BbvI GCAGC 3 cut(s) 127, 212, 634
BccI CCATC 3 cut(s) 94, 909, 1003
BceAI ACGGC 1 cut(s) 660
BcnI CCSGG 1 cut(s) 229
BcoDI GTCTC 3 cut(s) 138, 537, 806
BfaI CTAG 3 cut(s) 594, 728, 1023
BfmI CTRYAG 5 cut(s) 1131, 1158, 1185, 1212, 1239
BglI GCCNNNNNGGC 1 cut(s) 698
BisI GCNGC 3 cut(s) 141, 201, 648
BlsI GCNGC 3 cut(s) 142, 202, 649
Bme1390I CCNGG 1 cut(s) 229
Bme18I GGWCC 1 cut(s) 1012
BmgT120I GGNCC 2 cut(s) 350, 1012
BmiI GGNNCC 1 cut(s) 352
BmrFI CCNGG 1 cut(s) 229
BmsI GCATC 5 cut(s) 271, 591, 629, 1075, 1277
BpiI GAAGAC 1 cut(s) 1254
BpmI CTGGAG 1 cut(s) 328
Bpu10I CCTNAGC 1 cut(s) 144
BpuMI CCSGG 1 cut(s) 229
BsaAI YACGTR 1 cut(s) 155
BsaBI GATNNNNATC 1 cut(s) 81
BsaI GGTCTC 1 cut(s) 537
BsaJI CCNNGG 4 cut(s) 189, 258, 708, 1041
BsaWI WCCGGW 1 cut(s) 70
BsaXI ACNNNNNCTCC 2 cut(s) 326, 356
Bsc4I CCNNNNNNNGG 3 cut(s) 234, 553, 808
Bse1I ACTGG 4 cut(s) 345, 358, 843, 1034
Bse21I CCTNAGG 2 cut(s) 552, 881
Bse3DI GCAATG 1 cut(s) 642
Bse8I GATNNNNATC 1 cut(s) 81
BseDI CCNNGG 4 cut(s) 189, 258, 708, 1041
BseGI GGATG 5 cut(s) 30, 286, 400, 790, 995
BseJI GATNNNNATC 1 cut(s) 81
BseLI CCNNNNNNNGG 3 cut(s) 234, 553, 808
BseMI GCAATG 1 cut(s) 642
BseMII CTCAG 3 cut(s) 158, 543, 872
BseNI ACTGG 4 cut(s) 345, 358, 843, 1034
BseRI GAGGAG 2 cut(s) 290, 555
BseXI GCAGC 3 cut(s) 127, 212, 634
Bsh1236I CGCG 3 cut(s) 627, 753, 979
BshFI GGCC 3 cut(s) 149, 351, 824
BsiSI CCGG 2 cut(s) 71, 228
BsiWI CGTACG 1 cut(s) 488
BslFI GGGAC 1 cut(s) 570
BslI CCNNNNNNNGG 3 cut(s) 234, 553, 808
BsmAI GTCTC 3 cut(s) 138, 537, 806
BsmBI CGTCTC 1 cut(s) 138
BsmFI GGGAC 1 cut(s) 570
BsmI GAATGC 1 cut(s) 407
BsnI GGCC 3 cut(s) 149, 351, 824
Bso31I GGTCTC 1 cut(s) 537
Bsp143I GATC 4 cut(s) 315, 320, 694, 1026
Bsp68I TCGCGA 2 cut(s) 627, 753
BspACI CCGC 5 cut(s) 312, 412, 782, 977, 1004
BspANI GGCC 3 cut(s) 149, 351, 824
BspCNI CTCAG 3 cut(s) 157, 544, 873
BspFNI CGCG 3 cut(s) 627, 753, 979
BspLI GGNNCC 1 cut(s) 352
BspPI GGATC 2 cut(s) 323, 1034
BspTNI GGTCTC 1 cut(s) 537
BsrBI CCGCTC 1 cut(s) 782
BsrDI GCAATG 1 cut(s) 642
BsrI ACTGG 4 cut(s) 345, 358, 843, 1034
BssECI CCNNGG 4 cut(s) 189, 258, 708, 1041
BssMI GATC 4 cut(s) 315, 320, 694, 1026
BssSI CACGAG 1 cut(s) 864
BssT1I CCWWGG 4 cut(s) 189, 258, 708, 1041
Bst2BI CACGAG 1 cut(s) 864
Bst4CI ACNGT 4 cut(s) 685, 758, 875, 1226
Bst6I CTCTTC 3 cut(s) 45, 267, 532
BstAPI GCANNNNNTGC 2 cut(s) 647, 1274
BstBAI YACGTR 1 cut(s) 155
BstDEI CTNAG 3 cut(s) 144, 552, 881
BstF5I GGATG 5 cut(s) 30, 286, 400, 790, 995
BstFNI CGCG 3 cut(s) 627, 753, 979
BstHHI GCGC 1 cut(s) 981
BstKTI GATC 4 cut(s) 318, 323, 697, 1029
BstMAI GTCTC 3 cut(s) 138, 537, 806
BstMBI GATC 4 cut(s) 315, 320, 694, 1026
BstMWI GCNNNNNNNGC 8 cut(s) 146, 155, 254, 647, 653, 698, 1142, 1274
BstSCI CCNGG 1 cut(s) 227
BstSFI CTRYAG 5 cut(s) 1131, 1158, 1185, 1212, 1239
BstUI CGCG 3 cut(s) 627, 753, 979
BstV1I GCAGC 3 cut(s) 127, 212, 634
BstV2I GAAGAC 1 cut(s) 1254
Bsu36I CCTNAGG 2 cut(s) 552, 881
BsuRI GGCC 3 cut(s) 149, 351, 824
BtgZI GCGATG 1 cut(s) 47
BtsCI GGATG 5 cut(s) 30, 286, 400, 790, 995
BtsIMutI CAGTG 2 cut(s) 352, 850
BtuMI TCGCGA 2 cut(s) 627, 753
CaiI CAGNNNCTG 2 cut(s) 1184, 1238
CfoI GCGC 1 cut(s) 981
Cfr13I GGNCC 2 cut(s) 350, 1012
Csp6I GTAC 2 cut(s) 7, 489
CviQI GTAC 2 cut(s) 7, 489
DdeI CTNAG 3 cut(s) 144, 552, 881
DpnI GATC 4 cut(s) 317, 322, 696, 1028
DpnII GATC 4 cut(s) 315, 320, 694, 1026
EaeI YGGCCR 1 cut(s) 822
Eam1104I CTCTTC 3 cut(s) 45, 267, 532
EarI CTCTTC 3 cut(s) 45, 267, 532
Eco130I CCWWGG 4 cut(s) 189, 258, 708, 1041
Eco31I GGTCTC 1 cut(s) 537
Eco32I GATATC 1 cut(s) 79
Eco47I GGWCC 1 cut(s) 1012
Eco81I CCTNAGG 2 cut(s) 552, 881
EcoO109I RGGNCCY 1 cut(s) 1012
EcoRI GAATTC 1 cut(s) 850
EcoRV GATATC 1 cut(s) 79
EcoT14I CCWWGG 4 cut(s) 189, 258, 708, 1041
ErhI CCWWGG 4 cut(s) 189, 258, 708, 1041
Esp3I CGTCTC 1 cut(s) 138
FaiI YATR 5 cut(s) 152, 207, 579, 861, 964
FaqI GGGAC 1 cut(s) 570
FauI CCCGC 1 cut(s) 305
Fnu4HI GCNGC 3 cut(s) 141, 201, 648
FokI GGATG 5 cut(s) 37, 293, 387, 797, 982
Fsp4HI GCNGC 3 cut(s) 141, 201, 648
FspBI CTAG 3 cut(s) 594, 728, 1023
GlaI GCGC 1 cut(s) 980
GluI GCNGC 3 cut(s) 141, 201, 648
GsuI CTGGAG 1 cut(s) 328
HaeIII GGCC 3 cut(s) 149, 351, 824
HapII CCGG 2 cut(s) 71, 228
HhaI GCGC 1 cut(s) 981
Hin6I GCGC 1 cut(s) 979
HinP1I GCGC 1 cut(s) 979
HindIII AAGCTT 1 cut(s) 567
HinfI GANTC 9 cut(s) 212, 265, 429, 598, 796, 814, 1181, 1208, 1235
HpaII CCGG 2 cut(s) 71, 228
HphI GGTGA 3 cut(s) 467, 978, 1116
Hpy166II GTNNAC 2 cut(s) 775, 955
Hpy188I TCNGA 5 cut(s) 320, 385, 521, 937, 1117
Hpy188III TCNNGA 9 cut(s) 269, 433, 602, 626, 671, 752, 761, 880, 1092
Hpy8I GTNNAC 2 cut(s) 775, 955
Hpy99I CGWCG 1 cut(s) 632
HpyAV CCTTC 9 cut(s) 9, 463, 476, 758, 760, 823, 1137, 1163, 1164
HpyCH4III ACNGT 4 cut(s) 685, 758, 875, 1226
HpyCH4IV ACGT 2 cut(s) 154, 630
HpyCH4V TGCA 7 cut(s) 103, 200, 407, 635, 863, 916, 1268
HpyF10VI GCNNNNNNNGC 8 cut(s) 146, 155, 254, 647, 653, 698, 1142, 1274
HpyF3I CTNAG 3 cut(s) 144, 552, 881
HpySE526I ACGT 2 cut(s) 154, 630
HspAI GCGC 1 cut(s) 979
Kzo9I GATC 4 cut(s) 315, 320, 694, 1026
LmnI GCTCC 1 cut(s) 673
Lsp1109I GCAGC 3 cut(s) 127, 212, 634
LweI GCATC 5 cut(s) 271, 591, 629, 1075, 1277
MaeI CTAG 3 cut(s) 594, 728, 1023
MaeII ACGT 2 cut(s) 154, 630
MaeIII GTNAC 3 cut(s) 455, 1036, 1102
MalI GATC 4 cut(s) 317, 322, 696, 1028
MbiI CCGCTC 1 cut(s) 782
MboI GATC 4 cut(s) 315, 320, 694, 1026
MfeI CAATTG 1 cut(s) 806
MluCI AATT 6 cut(s) 112, 287, 528, 659, 806, 850
MlyI GAGTC 2 cut(s) 607, 808
MroXI GAANNNNTTC 1 cut(s) 875
MseI TTAA 3 cut(s) 444, 687, 1065
MspI CCGG 2 cut(s) 71, 228
MspR9I CCNGG 1 cut(s) 229
MunI CAATTG 1 cut(s) 806
Mva1269I GAATGC 1 cut(s) 407
MvnI CGCG 3 cut(s) 627, 753, 979
MwoI GCNNNNNNNGC 8 cut(s) 146, 155, 254, 647, 653, 698, 1142, 1274
NciI CCSGG 1 cut(s) 229
NdeII GATC 4 cut(s) 315, 320, 694, 1026
NlaIV GGNNCC 1 cut(s) 352
NmeAIII GCCGAG 1 cut(s) 850
NmuCI GTSAC 2 cut(s) 455, 1102
NruI TCGCGA 2 cut(s) 627, 753
PcsI WCGNNNNNNNCGW 2 cut(s) 757, 871
PctI GAATGC 1 cut(s) 407
PdmI GAANNNNTTC 1 cut(s) 875
PfeI GAWTC 7 cut(s) 212, 265, 429, 796, 1181, 1208, 1235
Pfl23II CGTACG 1 cut(s) 488
PflMI CCANNNNNTGG 1 cut(s) 808
PkrI GCNGC 3 cut(s) 142, 202, 649
PleI GAGTC 2 cut(s) 606, 808
PpsI GAGTC 2 cut(s) 606, 808
Ppu21I YACGTR 1 cut(s) 155
PpuMI RGGWCCY 1 cut(s) 1012
Psp5II RGGWCCY 1 cut(s) 1012
PspLI CGTACG 1 cut(s) 488
PspN4I GGNNCC 1 cut(s) 352
PspPI GGNCC 2 cut(s) 350, 1012
PspPPI RGGWCCY 1 cut(s) 1012
PstNI CAGNNNCTG 2 cut(s) 1184, 1238
RruI TCGCGA 2 cut(s) 627, 753
RsaI GTAC 2 cut(s) 8, 490
RsaNI GTAC 2 cut(s) 7, 489
SaqAI TTAA 3 cut(s) 444, 687, 1065
SatI GCNGC 3 cut(s) 141, 201, 648
Sau3AI GATC 4 cut(s) 315, 320, 694, 1026
Sau96I GGNCC 2 cut(s) 350, 1012
SchI GAGTC 2 cut(s) 607, 808
ScrFI CCNGG 1 cut(s) 229
SfaNI GCATC 5 cut(s) 271, 591, 629, 1075, 1277
SfcI CTRYAG 5 cut(s) 1131, 1158, 1185, 1212, 1239
SinI GGWCC 1 cut(s) 1012
Sse9I AATT 6 cut(s) 112, 287, 528, 659, 806, 850
SsiI CCGC 5 cut(s) 312, 412, 782, 977, 1004
SspMI CTAG 3 cut(s) 594, 728, 1023
StyD4I CCNGG 1 cut(s) 227
StyI CCWWGG 4 cut(s) 189, 258, 708, 1041
TaaI ACNGT 4 cut(s) 685, 758, 875, 1226
TaiI ACGT 2 cut(s) 157, 633
TaqI TCGA 4 cut(s) 184, 250, 835, 1093
TasI AATT 6 cut(s) 112, 287, 528, 659, 806, 850
TfiI GAWTC 7 cut(s) 212, 265, 429, 796, 1181, 1208, 1235
Tru1I TTAA 3 cut(s) 444, 687, 1065
Tru9I TTAA 3 cut(s) 444, 687, 1065
TscAI CASTG 2 cut(s) 352, 850
TseFI GTSAC 2 cut(s) 455, 1102
TseI GCWGC 3 cut(s) 140, 200, 647
Tsp45I GTSAC 2 cut(s) 455, 1102
TspDTI ATGAA 5 cut(s) 50, 105, 189, 222, 1008
TspRI CASTG 2 cut(s) 352, 850
Van91I CCANNNNNTGG 1 cut(s) 808
VpaK11BI GGWCC 1 cut(s) 1012
XapI RAATTY 3 cut(s) 287, 528, 850
XmnI GAANNNNTTC 1 cut(s) 875
XspI CTAG 3 cut(s) 594, 728, 1023
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.