Rroxscaffold_6G00419980

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0014985
Physical Location & Seq
Reverse (-)
41327006 .. 41329592
2587 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00419980.1

Sequence Viewer

Length: 1182 bp
ATGGCGTACAGGAGAAGGCAGGGGATGACAAGAGCCTCTACTTTCAAAGAAGAGGTTGTTCATCGCCCACCGGACGATATCAATCCATCTGCTTCCCCTCTGCAATCTTCCAATTCATTTTCGGCTTCTTCGTCTCTTGCTGCTCAGGCCATACGTGCCTCTGCTCTATCAAATGAAAGAAATCGAACCAAGGACTTTGCAGCGTATGAAGATTCGTCAGCAAAATCCGGGTTTTGGGGTGTTCTGGCTCGAAAAGCCAAGGCCATTCTTGAAGAGGAGGATGCTGAATTTCAGCGAAATGATGTGTCTGGCGGGATCAGATCATCACAGCTCAACACTACCTCCAGTGGCCCCAACCAGTTTCAACAACAATATCAGTCATCTGATAACAGAATGGAACATCCTGCATTCCGCAAGGGCTTGGATAGAATCACGACTTCCCTTAATCATCTTGGTGACACATTTGAGAAGGCTTTTGAGGAAGGTCGAACGATTGTGGAGAATAAAACTGCCGACATCAGACATCAAATTCAACGAAGAGGAGACCACCCTGAGGGACAAAATCAACCTCCTTATTATGGCATCAAACAAACTAGGAGTCCTGATACTCAAATCAAGGCATCTCGCGACGTTGCAATGGCAACGGCTGCCAAAGCAAAATTACTTCTTCGGGAGCTGAAAACTGTTAAAGCTGATCTGGCTTTTGCCAAGGAAAGATGTTCTCAACTAGAAGAAGAAAATAAACGCCTTCGCGACAGTCGTGAGAAGGGAGTAAACCGAGCGGATGATGACTTGATTCGCCATCAATTGGAGACTCTTTTGGCTGAGAAGGGTCGATTAGCCAGTGAGAATTCAGTTTATGCACGAGAGAACCGTTTCCTGAGGGAAGTTGTAGAATACCATCAACTCACAATGCAAGATGTTGTGATCACACCAGTTACCAAGGAAATACTTTCTGCCCACATTAACCCCCAAGCGAATAATGATGCTTCTCGAAATGAGGTCACACCAAGTTCAGATATCTCACCTTCTGTAGCAGAAGTTGCTAAAACACCTTCTGTAGCAGAGAAAGGTAAAACAGATTCTGTAGCAGAAGAAAGTAAAACAGATTCTGTAGCAGAAGACAGTAAAACAGATTCTGTAGCAGAAGACACGAAAAGACCCCCTGCATCTTCTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

393

Amino Acids

43.65

Weight (kDa)

6.5

Isoelectric Point (pI)

53.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014985)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30050
fragaria_vesca FvH4_6g09370
malus_domestica MD04G1178200.v1.1 MD12G1193800.v1.1
prunus_persica Prupe.6G298200_v2.0.a1
pyrus_communis pycom04g15720 pycom12g18000
rosa_chinensis RchiOBHm_Chr3g0459761
rosa_laevigata RLG00000025059
rosa_multiflora Rmu_sc0000240.1_g000037
rosa_roxburghii Rroxscaffold_6G00419980
rosa_rugosa Rorug03G0038100
rosa_samantha Rh3AG096700 Rh3BG099400 Rh3CG101300 Rh3DG100700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 808
AccBSI CCGCTC 1 cut(s) 782
AccII CGCG 2 cut(s) 627, 753
AciI CCGC 3 cut(s) 312, 412, 782
AclWI GGATC 1 cut(s) 323
AcsI RAATTY 3 cut(s) 287, 528, 850
AfaI GTAC 1 cut(s) 8
AfiI CCNNNNNNNGG 4 cut(s) 234, 553, 578, 808
AgsI TTSAA 4 cut(s) 46, 272, 365, 533
AluBI AGCT 3 cut(s) 331, 676, 692
AluI AGCT 3 cut(s) 331, 676, 692
Alw26I GTCTC 3 cut(s) 138, 537, 806
AlwI GGATC 1 cut(s) 323
AlwNI CAGNNNCTG 3 cut(s) 1085, 1112, 1139
AoxI GGCC 3 cut(s) 147, 261, 349
ApeKI GCWGC 3 cut(s) 140, 200, 647
ApoI RAATTY 3 cut(s) 287, 528, 850
ArsI GACNNNNNNTTYG 2 cut(s) 583, 615
Asp700I GAANNNNTTC 1 cut(s) 875
AspS9I GGNCC 1 cut(s) 350
AsuC2I CCSGG 1 cut(s) 229
AsuHPI GGTGA 2 cut(s) 467, 1017
AxyI CCTNAGG 2 cut(s) 552, 881
BauI CACGAG 1 cut(s) 864
BbsI GAAGAC 2 cut(s) 1128, 1155
BbvI GCAGC 3 cut(s) 127, 212, 634
BccI CCATC 3 cut(s) 94, 810, 909
BceAI ACGGC 1 cut(s) 660
BclI TGATCA 1 cut(s) 927
BcnI CCSGG 1 cut(s) 229
BcoDI GTCTC 3 cut(s) 138, 537, 806
BfaI CTAG 2 cut(s) 594, 728
BfmI CTRYAG 5 cut(s) 1032, 1059, 1086, 1113, 1140
BisI GCNGC 3 cut(s) 141, 201, 648
BlsI GCNGC 3 cut(s) 142, 202, 649
Bme1390I CCNGG 1 cut(s) 229
BmgT120I GGNCC 1 cut(s) 350
BmiI GGNNCC 1 cut(s) 352
BmrFI CCNGG 1 cut(s) 229
BmsI GCATC 5 cut(s) 271, 591, 629, 976, 1178
BpiI GAAGAC 2 cut(s) 1128, 1155
BpmI CTGGAG 1 cut(s) 328
Bpu10I CCTNAGC 1 cut(s) 144
BpuMI CCSGG 1 cut(s) 229
BsaAI YACGTR 1 cut(s) 155
BsaBI GATNNNNATC 1 cut(s) 81
BsaI GGTCTC 1 cut(s) 537
BsaJI CCNNGG 4 cut(s) 189, 258, 708, 942
BsaWI WCCGGW 1 cut(s) 70
BsaXI ACNNNNNCTCC 2 cut(s) 326, 356
Bsc4I CCNNNNNNNGG 4 cut(s) 234, 553, 578, 808
Bse1I ACTGG 4 cut(s) 345, 358, 843, 935
Bse21I CCTNAGG 2 cut(s) 552, 881
Bse3DI GCAATG 1 cut(s) 642
Bse8I GATNNNNATC 1 cut(s) 81
BseDI CCNNGG 4 cut(s) 189, 258, 708, 942
BseGI GGATG 4 cut(s) 30, 286, 400, 790
BseJI GATNNNNATC 1 cut(s) 81
BseLI CCNNNNNNNGG 4 cut(s) 234, 553, 578, 808
BseMI GCAATG 1 cut(s) 642
BseMII CTCAG 4 cut(s) 158, 543, 816, 872
BseNI ACTGG 4 cut(s) 345, 358, 843, 935
BseRI GAGGAG 2 cut(s) 290, 555
BseXI GCAGC 3 cut(s) 127, 212, 634
Bsh1236I CGCG 2 cut(s) 627, 753
BshFI GGCC 3 cut(s) 149, 263, 351
BsiSI CCGG 2 cut(s) 71, 228
BslFI GGGAC 1 cut(s) 570
BslI CCNNNNNNNGG 4 cut(s) 234, 553, 578, 808
BsmAI GTCTC 3 cut(s) 138, 537, 806
BsmBI CGTCTC 1 cut(s) 138
BsmFI GGGAC 1 cut(s) 570
BsmI GAATGC 1 cut(s) 407
BsnI GGCC 3 cut(s) 149, 263, 351
Bso31I GGTCTC 1 cut(s) 537
Bsp143I GATC 4 cut(s) 315, 320, 694, 927
Bsp68I TCGCGA 2 cut(s) 627, 753
BspACI CCGC 3 cut(s) 312, 412, 782
BspANI GGCC 3 cut(s) 149, 263, 351
BspCNI CTCAG 4 cut(s) 157, 544, 817, 873
BspFNI CGCG 2 cut(s) 627, 753
BspLI GGNNCC 1 cut(s) 352
BspPI GGATC 1 cut(s) 323
BspTNI GGTCTC 1 cut(s) 537
BsrBI CCGCTC 1 cut(s) 782
BsrDI GCAATG 1 cut(s) 642
BsrI ACTGG 4 cut(s) 345, 358, 843, 935
BssECI CCNNGG 4 cut(s) 189, 258, 708, 942
BssMI GATC 4 cut(s) 315, 320, 694, 927
BssSI CACGAG 1 cut(s) 864
BssT1I CCWWGG 4 cut(s) 189, 258, 708, 942
Bst2BI CACGAG 1 cut(s) 864
Bst4CI ACNGT 4 cut(s) 685, 758, 875, 1127
Bst6I CTCTTC 3 cut(s) 45, 267, 532
BstAPI GCANNNNNTGC 3 cut(s) 647, 1043, 1175
BstBAI YACGTR 1 cut(s) 155
BstDEI CTNAG 4 cut(s) 144, 552, 825, 881
BstF5I GGATG 4 cut(s) 30, 286, 400, 790
BstFNI CGCG 2 cut(s) 627, 753
BstKTI GATC 4 cut(s) 318, 323, 697, 930
BstMAI GTCTC 3 cut(s) 138, 537, 806
BstMBI GATC 4 cut(s) 315, 320, 694, 927
BstMWI GCNNNNNNNGC 8 cut(s) 146, 155, 254, 647, 653, 698, 1043, 1175
BstSCI CCNGG 1 cut(s) 227
BstSFI CTRYAG 5 cut(s) 1032, 1059, 1086, 1113, 1140
BstUI CGCG 2 cut(s) 627, 753
BstV1I GCAGC 3 cut(s) 127, 212, 634
BstV2I GAAGAC 2 cut(s) 1128, 1155
Bsu36I CCTNAGG 2 cut(s) 552, 881
BsuRI GGCC 3 cut(s) 149, 263, 351
BtgZI GCGATG 1 cut(s) 47
BtsCI GGATG 4 cut(s) 30, 286, 400, 790
BtsIMutI CAGTG 2 cut(s) 352, 850
BtuMI TCGCGA 2 cut(s) 627, 753
CaiI CAGNNNCTG 3 cut(s) 1085, 1112, 1139
Cfr13I GGNCC 1 cut(s) 350
Csp6I GTAC 1 cut(s) 7
CviQI GTAC 1 cut(s) 7
DdeI CTNAG 4 cut(s) 144, 552, 825, 881
DpnI GATC 4 cut(s) 317, 322, 696, 929
DpnII GATC 4 cut(s) 315, 320, 694, 927
Eam1104I CTCTTC 3 cut(s) 45, 267, 532
EarI CTCTTC 3 cut(s) 45, 267, 532
Eco130I CCWWGG 4 cut(s) 189, 258, 708, 942
Eco31I GGTCTC 1 cut(s) 537
Eco32I GATATC 2 cut(s) 79, 1021
Eco81I CCTNAGG 2 cut(s) 552, 881
EcoRI GAATTC 1 cut(s) 850
EcoRV GATATC 2 cut(s) 79, 1021
EcoT14I CCWWGG 4 cut(s) 189, 258, 708, 942
ErhI CCWWGG 4 cut(s) 189, 258, 708, 942
Esp3I CGTCTC 1 cut(s) 138
FaiI YATR 4 cut(s) 152, 207, 579, 861
FaqI GGGAC 1 cut(s) 570
FauI CCCGC 1 cut(s) 305
FbaI TGATCA 1 cut(s) 927
Fnu4HI GCNGC 3 cut(s) 141, 201, 648
FokI GGATG 4 cut(s) 37, 293, 387, 797
Fsp4HI GCNGC 3 cut(s) 141, 201, 648
FspBI CTAG 2 cut(s) 594, 728
GluI GCNGC 3 cut(s) 141, 201, 648
GsuI CTGGAG 1 cut(s) 328
HaeIII GGCC 3 cut(s) 149, 263, 351
HapII CCGG 2 cut(s) 71, 228
HinfI GANTC 8 cut(s) 212, 429, 598, 796, 814, 1082, 1109, 1136
HpaII CCGG 2 cut(s) 71, 228
HphI GGTGA 2 cut(s) 467, 1017
Hpy166II GTNNAC 1 cut(s) 775
Hpy188I TCNGA 4 cut(s) 320, 385, 521, 1018
Hpy188III TCNNGA 9 cut(s) 269, 433, 602, 626, 671, 752, 761, 880, 993
Hpy8I GTNNAC 1 cut(s) 775
Hpy99I CGWCG 1 cut(s) 632
HpyAV CCTTC 8 cut(s) 9, 463, 476, 758, 760, 823, 1038, 1065
HpyCH4III ACNGT 4 cut(s) 685, 758, 875, 1127
HpyCH4IV ACGT 2 cut(s) 154, 630
HpyCH4V TGCA 7 cut(s) 103, 200, 407, 635, 863, 916, 1169
HpyF10VI GCNNNNNNNGC 8 cut(s) 146, 155, 254, 647, 653, 698, 1043, 1175
HpyF3I CTNAG 4 cut(s) 144, 552, 825, 881
HpySE526I ACGT 2 cut(s) 154, 630
Ksp22I TGATCA 1 cut(s) 927
Kzo9I GATC 4 cut(s) 315, 320, 694, 927
LmnI GCTCC 1 cut(s) 673
Lsp1109I GCAGC 3 cut(s) 127, 212, 634
LweI GCATC 5 cut(s) 271, 591, 629, 976, 1178
MaeI CTAG 2 cut(s) 594, 728
MaeII ACGT 2 cut(s) 154, 630
MaeIII GTNAC 3 cut(s) 455, 937, 1003
MalI GATC 4 cut(s) 317, 322, 696, 929
MbiI CCGCTC 1 cut(s) 782
MboI GATC 4 cut(s) 315, 320, 694, 927
MfeI CAATTG 1 cut(s) 806
MluCI AATT 6 cut(s) 112, 287, 528, 659, 806, 850
MlyI GAGTC 2 cut(s) 607, 808
MroXI GAANNNNTTC 1 cut(s) 875
MseI TTAA 3 cut(s) 444, 687, 966
MslI CAYNNNNRTG 1 cut(s) 453
MspI CCGG 2 cut(s) 71, 228
MspR9I CCNGG 1 cut(s) 229
MunI CAATTG 1 cut(s) 806
Mva1269I GAATGC 1 cut(s) 407
MvnI CGCG 2 cut(s) 627, 753
MwoI GCNNNNNNNGC 8 cut(s) 146, 155, 254, 647, 653, 698, 1043, 1175
NciI CCSGG 1 cut(s) 229
NdeII GATC 4 cut(s) 315, 320, 694, 927
NlaIV GGNNCC 1 cut(s) 352
NmuCI GTSAC 2 cut(s) 455, 1003
NruI TCGCGA 2 cut(s) 627, 753
PcsI WCGNNNNNNNCGW 3 cut(s) 128, 757, 871
PctI GAATGC 1 cut(s) 407
PdmI GAANNNNTTC 1 cut(s) 875
PfeI GAWTC 6 cut(s) 212, 429, 796, 1082, 1109, 1136
PflMI CCANNNNNTGG 1 cut(s) 808
PkrI GCNGC 3 cut(s) 142, 202, 649
PleI GAGTC 2 cut(s) 606, 808
PpsI GAGTC 2 cut(s) 606, 808
Ppu21I YACGTR 1 cut(s) 155
PspN4I GGNNCC 1 cut(s) 352
PspPI GGNCC 1 cut(s) 350
PstNI CAGNNNCTG 3 cut(s) 1085, 1112, 1139
RruI TCGCGA 2 cut(s) 627, 753
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
RseI CAYNNNNRTG 1 cut(s) 453
SaqAI TTAA 3 cut(s) 444, 687, 966
SatI GCNGC 3 cut(s) 141, 201, 648
Sau3AI GATC 4 cut(s) 315, 320, 694, 927
Sau96I GGNCC 1 cut(s) 350
SchI GAGTC 2 cut(s) 607, 808
ScrFI CCNGG 1 cut(s) 229
SfaNI GCATC 5 cut(s) 271, 591, 629, 976, 1178
SfcI CTRYAG 5 cut(s) 1032, 1059, 1086, 1113, 1140
SmiMI CAYNNNNRTG 1 cut(s) 453
Sse9I AATT 6 cut(s) 112, 287, 528, 659, 806, 850
SsiI CCGC 3 cut(s) 312, 412, 782
SspMI CTAG 2 cut(s) 594, 728
StyD4I CCNGG 1 cut(s) 227
StyI CCWWGG 4 cut(s) 189, 258, 708, 942
TaaI ACNGT 4 cut(s) 685, 758, 875, 1127
TaiI ACGT 2 cut(s) 157, 633
TaqI TCGA 5 cut(s) 184, 250, 487, 835, 994
TasI AATT 6 cut(s) 112, 287, 528, 659, 806, 850
TfiI GAWTC 6 cut(s) 212, 429, 796, 1082, 1109, 1136
Tru1I TTAA 3 cut(s) 444, 687, 966
Tru9I TTAA 3 cut(s) 444, 687, 966
TscAI CASTG 2 cut(s) 352, 850
TseFI GTSAC 2 cut(s) 455, 1003
TseI GCWGC 3 cut(s) 140, 200, 647
Tsp45I GTSAC 2 cut(s) 455, 1003
TspDTI ATGAA 4 cut(s) 50, 105, 189, 222
TspRI CASTG 2 cut(s) 352, 850
Van91I CCANNNNNTGG 1 cut(s) 808
XapI RAATTY 3 cut(s) 287, 528, 850
XmnI GAANNNNTTC 1 cut(s) 875
XspI CTAG 2 cut(s) 594, 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.