Rmu_sc0000240.1_g000037

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000240.1
OG0014985
Physical Location & Seq
Forward (+)
196591 .. 199042
2452 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000240.1_g000037.1.cds

Sequence Viewer

Length: 996 bp
atggcgtacaggagaaggcaggggatgacaagagcctctactttcaaagaagaggttgttcatcgcccaccggacgatatcaatccatctgcttcccctctgcaatcttccaattcattttcggcttcttcgtctcttgctgctcaggccatacgtgcctctgctctatcaaatgaaagaaatcgaaccaaggactttgcagcatatgaagattcgtcagcaaaatcagggttttggggtgttctggctcgaaaagccaaggccattcttgaagaggaggatgctgaatttcagcaaaataatgtgtctggcgggatcagatcatcacagctcaacactacctccagtggccccaaccagagagaaaaaaaaaatggcgtacaggagaaggcaggggatgacaagagcctctactttcaaagaagaggttgttcatcgcccaccggacgatatcaatccatctgcttcccctctgcaatcttccaattcattttcggcttcttcgtctcttgctgctcaggccatacgtgcctctgctctatcaaatgtcgattagccagtgagaattcagtttatgcacgagagaaccgtttcctgagggaagttgtagaataccatcaactcacaatgcaagatgttgtgtatttatctgacgaagaaacagaagtttaccccctatgttccctttctccgcgctcatctccacctccatccccaccaccagaggacctttcatctaggatcacaccagttaccaaggaaatactttctgcccacattaacccccaagcgaataatgatgcttctcgaaatgaggtcacaccaagttcagatatctcaccttctgtagcagaggaagctaaaacaccttctgtagcagaggaaggtaaaacagattctgtagcagaagaaagtaaaatagattctgtagcagaagacagtaaagcagattctgtaacagaagacactaaaagaccccctgcatcttctgcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

331

Amino Acids

36.15

Weight (kDa)

5.37

Isoelectric Point (pI)

66.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014985)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30050
fragaria_vesca FvH4_6g09370
malus_domestica MD04G1178200.v1.1 MD12G1193800.v1.1
prunus_persica Prupe.6G298200_v2.0.a1
pyrus_communis pycom04g15720 pycom12g18000
rosa_chinensis RchiOBHm_Chr3g0459761
rosa_laevigata RLG00000025059
rosa_multiflora Rmu_sc0000240.1_g000037
rosa_roxburghii Rroxscaffold_6G00419980
rosa_rugosa Rorug03G0038100
rosa_samantha Rh3AG096700 Rh3BG099400 Rh3CG101300 Rh3DG100700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 694
AciI CCGC 2 cut(s) 312, 692
AclWI GGATC 2 cut(s) 323, 749
AcsI RAATTY 2 cut(s) 287, 565
AfaI GTAC 2 cut(s) 8, 381
AgsI TTSAA 3 cut(s) 46, 272, 419
AluBI AGCT 2 cut(s) 331, 860
AluI AGCT 2 cut(s) 331, 860
Alw26I GTCTC 2 cut(s) 138, 511
AlwI GGATC 2 cut(s) 323, 749
AlwNI CAGNNNCTG 2 cut(s) 899, 953
AoxI GGCC 4 cut(s) 147, 261, 349, 520
ApeKI GCWGC 3 cut(s) 140, 200, 513
ApoI RAATTY 2 cut(s) 287, 565
Asp700I GAANNNNTTC 1 cut(s) 590
AspLEI GCGC 1 cut(s) 696
AspS9I GGNCC 2 cut(s) 350, 727
AsuHPI GGTGA 1 cut(s) 831
AvaII GGWCC 1 cut(s) 727
AxyI CCTNAGG 1 cut(s) 596
BauI CACGAG 1 cut(s) 579
BbsI GAAGAC 2 cut(s) 942, 969
BbvI GCAGC 3 cut(s) 127, 212, 500
BccI CCATC 4 cut(s) 94, 467, 624, 718
BcoDI GTCTC 2 cut(s) 138, 511
BfaI CTAG 1 cut(s) 738
BfmI CTRYAG 4 cut(s) 846, 873, 900, 927
BisI GCNGC 3 cut(s) 141, 201, 514
BlsI GCNGC 3 cut(s) 142, 202, 515
Bme18I GGWCC 1 cut(s) 727
BmgT120I GGNCC 2 cut(s) 350, 727
BmiI GGNNCC 1 cut(s) 352
BmsI GCATC 3 cut(s) 271, 790, 992
BpiI GAAGAC 2 cut(s) 942, 969
BpmI CTGGAG 1 cut(s) 328
Bpu10I CCTNAGC 2 cut(s) 144, 517
BsaAI YACGTR 2 cut(s) 155, 528
BsaBI GATNNNNATC 2 cut(s) 81, 454
BsaJI CCNNGG 3 cut(s) 189, 258, 756
BsaWI WCCGGW 2 cut(s) 70, 443
BsaXI ACNNNNNCTCC 2 cut(s) 326, 356
Bse1I ACTGG 3 cut(s) 345, 558, 749
Bse21I CCTNAGG 1 cut(s) 596
Bse8I GATNNNNATC 2 cut(s) 81, 454
BseDI CCNNGG 3 cut(s) 189, 258, 756
BseGI GGATG 4 cut(s) 30, 286, 403, 710
BseJI GATNNNNATC 2 cut(s) 81, 454
BseMII CTCAG 3 cut(s) 158, 531, 587
BseNI ACTGG 3 cut(s) 345, 558, 749
BseRI GAGGAG 1 cut(s) 290
BseXI GCAGC 3 cut(s) 127, 212, 500
Bsh1236I CGCG 1 cut(s) 694
BshFI GGCC 4 cut(s) 149, 263, 351, 522
BsiSI CCGG 2 cut(s) 71, 444
BsmAI GTCTC 2 cut(s) 138, 511
BsmBI CGTCTC 2 cut(s) 138, 511
BsnI GGCC 4 cut(s) 149, 263, 351, 522
Bsp143I GATC 3 cut(s) 315, 320, 741
BspACI CCGC 2 cut(s) 312, 692
BspANI GGCC 4 cut(s) 149, 263, 351, 522
BspCNI CTCAG 3 cut(s) 157, 530, 588
BspFNI CGCG 1 cut(s) 694
BspLI GGNNCC 1 cut(s) 352
BspPI GGATC 2 cut(s) 323, 749
BsrI ACTGG 3 cut(s) 345, 558, 749
BssECI CCNNGG 3 cut(s) 189, 258, 756
BssMI GATC 3 cut(s) 315, 320, 741
BssSI CACGAG 1 cut(s) 579
BssT1I CCWWGG 3 cut(s) 189, 258, 756
Bst2BI CACGAG 1 cut(s) 579
Bst4CI ACNGT 2 cut(s) 590, 941
Bst6I CTCTTC 3 cut(s) 45, 267, 418
BstAPI GCANNNNNTGC 1 cut(s) 989
BstBAI YACGTR 2 cut(s) 155, 528
BstDEI CTNAG 3 cut(s) 144, 517, 596
BstF5I GGATG 4 cut(s) 30, 286, 403, 710
BstFNI CGCG 1 cut(s) 694
BstHHI GCGC 1 cut(s) 696
BstKTI GATC 3 cut(s) 318, 323, 744
BstMAI GTCTC 2 cut(s) 138, 511
BstMBI GATC 3 cut(s) 315, 320, 741
BstMWI GCNNNNNNNGC 7 cut(s) 146, 155, 254, 519, 528, 857, 989
BstSFI CTRYAG 4 cut(s) 846, 873, 900, 927
BstUI CGCG 1 cut(s) 694
BstV1I GCAGC 3 cut(s) 127, 212, 500
BstV2I GAAGAC 2 cut(s) 942, 969
Bsu36I CCTNAGG 1 cut(s) 596
BsuRI GGCC 4 cut(s) 149, 263, 351, 522
BtgZI GCGATG 2 cut(s) 47, 420
BtsCI GGATG 4 cut(s) 30, 286, 403, 710
BtsIMutI CAGTG 2 cut(s) 352, 565
CaiI CAGNNNCTG 2 cut(s) 899, 953
CfoI GCGC 1 cut(s) 696
Cfr13I GGNCC 2 cut(s) 350, 727
Csp6I GTAC 2 cut(s) 7, 380
CviQI GTAC 2 cut(s) 7, 380
DdeI CTNAG 3 cut(s) 144, 517, 596
DpnI GATC 3 cut(s) 317, 322, 743
DpnII GATC 3 cut(s) 315, 320, 741
Eam1104I CTCTTC 3 cut(s) 45, 267, 418
EarI CTCTTC 3 cut(s) 45, 267, 418
Eco130I CCWWGG 3 cut(s) 189, 258, 756
Eco32I GATATC 3 cut(s) 79, 452, 835
Eco47I GGWCC 1 cut(s) 727
Eco81I CCTNAGG 1 cut(s) 596
EcoO109I RGGNCCY 1 cut(s) 727
EcoRI GAATTC 1 cut(s) 565
EcoRV GATATC 3 cut(s) 79, 452, 835
EcoT14I CCWWGG 3 cut(s) 189, 258, 756
ErhI CCWWGG 3 cut(s) 189, 258, 756
Esp3I CGTCTC 2 cut(s) 138, 511
FaiI YATR 6 cut(s) 152, 205, 207, 525, 576, 679
FauI CCCGC 1 cut(s) 305
FauNDI CATATG 1 cut(s) 205
Fnu4HI GCNGC 3 cut(s) 141, 201, 514
FokI GGATG 4 cut(s) 37, 293, 410, 697
Fsp4HI GCNGC 3 cut(s) 141, 201, 514
FspBI CTAG 1 cut(s) 738
GlaI GCGC 1 cut(s) 695
GluI GCNGC 3 cut(s) 141, 201, 514
GsuI CTGGAG 1 cut(s) 328
HaeIII GGCC 4 cut(s) 149, 263, 351, 522
HapII CCGG 2 cut(s) 71, 444
HhaI GCGC 1 cut(s) 696
Hin6I GCGC 1 cut(s) 694
HinP1I GCGC 1 cut(s) 694
HinfI GANTC 4 cut(s) 212, 896, 923, 950
HpaII CCGG 2 cut(s) 71, 444
HphI GGTGA 1 cut(s) 831
Hpy166II GTNNAC 1 cut(s) 670
Hpy188I TCNGA 3 cut(s) 320, 652, 832
Hpy188III TCNNGA 3 cut(s) 269, 595, 807
Hpy8I GTNNAC 1 cut(s) 670
HpyAV CCTTC 5 cut(s) 9, 382, 852, 878, 879
HpyCH4III ACNGT 2 cut(s) 590, 941
HpyCH4IV ACGT 2 cut(s) 154, 527
HpyCH4V TGCA 6 cut(s) 103, 200, 476, 578, 631, 983
HpyF10VI GCNNNNNNNGC 7 cut(s) 146, 155, 254, 519, 528, 857, 989
HpyF3I CTNAG 3 cut(s) 144, 517, 596
HpySE526I ACGT 2 cut(s) 154, 527
HspAI GCGC 1 cut(s) 694
Kzo9I GATC 3 cut(s) 315, 320, 741
Lsp1109I GCAGC 3 cut(s) 127, 212, 500
LweI GCATC 3 cut(s) 271, 790, 992
MaeI CTAG 1 cut(s) 738
MaeII ACGT 2 cut(s) 154, 527
MaeIII GTNAC 3 cut(s) 751, 817, 955
MalI GATC 3 cut(s) 317, 322, 743
MboI GATC 3 cut(s) 315, 320, 741
MluCI AATT 4 cut(s) 112, 287, 485, 565
MroXI GAANNNNTTC 1 cut(s) 590
MseI TTAA 1 cut(s) 780
MspI CCGG 2 cut(s) 71, 444
MvnI CGCG 1 cut(s) 694
MwoI GCNNNNNNNGC 7 cut(s) 146, 155, 254, 519, 528, 857, 989
NdeI CATATG 1 cut(s) 205
NdeII GATC 3 cut(s) 315, 320, 741
NlaIV GGNNCC 1 cut(s) 352
NmuCI GTSAC 1 cut(s) 817
PcsI WCGNNNNNNNCGW 3 cut(s) 128, 501, 586
PdmI GAANNNNTTC 1 cut(s) 590
PfeI GAWTC 4 cut(s) 212, 896, 923, 950
PkrI GCNGC 3 cut(s) 142, 202, 515
Ppu21I YACGTR 2 cut(s) 155, 528
PpuMI RGGWCCY 1 cut(s) 727
Psp5II RGGWCCY 1 cut(s) 727
PspN4I GGNNCC 1 cut(s) 352
PspPI GGNCC 2 cut(s) 350, 727
PspPPI RGGWCCY 1 cut(s) 727
PstNI CAGNNNCTG 2 cut(s) 899, 953
RsaI GTAC 2 cut(s) 8, 381
RsaNI GTAC 2 cut(s) 7, 380
SaqAI TTAA 1 cut(s) 780
SatI GCNGC 3 cut(s) 141, 201, 514
Sau3AI GATC 3 cut(s) 315, 320, 741
Sau96I GGNCC 2 cut(s) 350, 727
SfaNI GCATC 3 cut(s) 271, 790, 992
SfcI CTRYAG 4 cut(s) 846, 873, 900, 927
SinI GGWCC 1 cut(s) 727
Sse9I AATT 4 cut(s) 112, 287, 485, 565
SsiI CCGC 2 cut(s) 312, 692
SspMI CTAG 1 cut(s) 738
StyI CCWWGG 3 cut(s) 189, 258, 756
TaaI ACNGT 2 cut(s) 590, 941
TaiI ACGT 2 cut(s) 157, 530
TaqI TCGA 4 cut(s) 184, 250, 550, 808
TasI AATT 4 cut(s) 112, 287, 485, 565
TfiI GAWTC 4 cut(s) 212, 896, 923, 950
Tru1I TTAA 1 cut(s) 780
Tru9I TTAA 1 cut(s) 780
TscAI CASTG 2 cut(s) 352, 565
TseFI GTSAC 1 cut(s) 817
TseI GCWGC 3 cut(s) 140, 200, 513
Tsp45I GTSAC 1 cut(s) 817
TspDTI ATGAA 7 cut(s) 50, 105, 189, 222, 423, 478, 723
TspRI CASTG 2 cut(s) 352, 565
VpaK11BI GGWCC 1 cut(s) 727
XapI RAATTY 2 cut(s) 287, 565
XmnI GAANNNNTTC 1 cut(s) 590
XspI CTAG 1 cut(s) 738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.