FvH4_6g09370

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014985
Physical Location & Seq
Forward (+)
5569535 .. 5572554
3020 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g09370.t1

Sequence Viewer

Length: 1326 bp
ATGGCGTACAGAAGAAGGCAGGGGATGACAAGAGCCTCTACTTTCAAAGAAGAGATTGTTCATCGTCCACCTGACGATATGAATCCATCTGCTTCCCCTCTGCAACCTTCTCATTCGTTTAATGCTTCTTCTTCTCTCGCTGCTCAGGCCATTCGTGCCTCTGCTCTATCAAATGAACGCAATCGAACCAAGGACTTCGCGGCCTATGAAGATTCATCAGCAAAATCCGGGTTTTGGGGTGTTCTGGCTCGAAAAGCCAAGGCCATTCTTGAAGAGGAGGATGCTGAGTTTCAGCAAAGTGATGTGTTTGGCGACATCATAGCATCACCTAAATTATCGCCATCACCGCTCTACACTACTTCCGGTGGCCCAACTCAGTTTCAACAAAAATACCAGTTATCTGATAACAGAATGGAACATCCTGCAATCCGCAAGGGTTTGGATAGAATCACAACTTCCCTTAATAATCTTGGTGACACTTTCGAGAAGGCTTTTGAGGAGGGCCGAACAATTGTGGAGAGTAAAACTGCCGACATCAGACATCAAATTCAAAGAAGAGGAGACCAACCGGAGGGACAAAATCAAGCTTCTTATTATGGCATCAAACAAGCTAGGAGCCCTGATACTCAAATCAAGGCATCTCGCGACGTTGCAATGGCAACGGCTGCCAAAGCAAAGTTACTTCTTAGAGAGCTGAAAACTGTTAAAGCCGATCTGGCTTTTGCCAAGGAAAGATGTTCTCAACTAGAAGAAGAAAACAAGCGCCTTCGCGAGAGTCGCGAGAAGGGAGTAAACCGAGCAGATGATGACTTGATTCGCCATCAGTTGGAGACCCTTTTAGCTGAGAAGGGTCGATTAGCCAATGAGAACTCAGTATATGCACGAGAGAACCGTTTCCTGAGGGAAATTGTAGAATACCATCAGCTCACAATGCAAGATGTTGTGTATTTATCTGACGAAGAAACAGAAGTTTACCCCCTAAGTAGCAGCCCTGAAGTTGCGCAAATACTCTCGCTTTCTCCGCACTCATCAGCACCACCATCCCCACCACCAGAGGACCTTTCATCTATGATCTCACCAGATACCAAGGAAATACTTGCTGCCCACATTAACCCACAAGCGAATAAAGATGCTTCTCAAAATGAGGTCACTCCAAGTTCAGATATCTCACCTTCTGTAGGAGAAGTTGCTAAAACACCTTCTGTAGGAGAAGTTGCTAAAACACCTTCTGTAGCAGAAGTTGTTAAAACTGCTTCTGTTGTAGAGGAAAGTAAAACAGATTCTGTAGCAGAAGACACTAAAAGACCCCCTGCATCTTCTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

442

Amino Acids

48.6

Weight (kDa)

5.6

Isoelectric Point (pI)

56.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014985)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30050
fragaria_vesca FvH4_6g09370
malus_domestica MD04G1178200.v1.1 MD12G1193800.v1.1
prunus_persica Prupe.6G298200_v2.0.a1
pyrus_communis pycom04g15720 pycom12g18000
rosa_chinensis RchiOBHm_Chr3g0459761
rosa_laevigata RLG00000025059
rosa_multiflora Rmu_sc0000240.1_g000037
rosa_roxburghii Rroxscaffold_6G00419980
rosa_rugosa Rorug03G0038100
rosa_samantha Rh3AG096700 Rh3BG099400 Rh3CG101300 Rh3DG100700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1002
AccB7I CCANNNNNTGG 1 cut(s) 826
AccBSI CCGCTC 1 cut(s) 349
AccII CGCG 4 cut(s) 200, 645, 771, 780
AciI CCGC 4 cut(s) 200, 347, 430, 1022
AcsI RAATTY 1 cut(s) 546
AcuI CTGAAG 1 cut(s) 1014
AfaI GTAC 1 cut(s) 8
AfiI CCNNNNNNNGG 5 cut(s) 234, 571, 826, 1178, 1205
AgsI TTSAA 4 cut(s) 46, 272, 383, 551
AluBI AGCT 5 cut(s) 587, 611, 694, 842, 925
AluI AGCT 5 cut(s) 587, 611, 694, 842, 925
Alw26I GTCTC 2 cut(s) 555, 824
AlwNI CAGNNNCTG 1 cut(s) 1283
AoxI GGCC 5 cut(s) 147, 201, 261, 367, 502
ApeKI GCWGC 4 cut(s) 140, 665, 987, 1100
ApoI RAATTY 1 cut(s) 546
Asp700I GAANNNNTTC 1 cut(s) 893
AspLEI GCGC 2 cut(s) 765, 1003
AspS9I GGNCC 3 cut(s) 368, 502, 1057
AsuC2I CCSGG 1 cut(s) 229
AsuHPI GGTGA 5 cut(s) 318, 336, 485, 1068, 1161
AvaII GGWCC 1 cut(s) 1057
AxyI CCTNAGG 1 cut(s) 899
BanII GRGCYC 1 cut(s) 620
BauI CACGAG 1 cut(s) 882
BbsI GAAGAC 1 cut(s) 1299
BbvI GCAGC 4 cut(s) 127, 652, 999, 1087
BccI CCATC 5 cut(s) 94, 349, 828, 927, 1048
BceAI ACGGC 1 cut(s) 678
BcnI CCSGG 1 cut(s) 229
BcoDI GTCTC 2 cut(s) 555, 824
BfaI CTAG 2 cut(s) 612, 746
BfmI CTRYAG 4 cut(s) 1176, 1203, 1230, 1284
BfoI RGCGCY 1 cut(s) 766
BglI GCCNNNNNGGC 1 cut(s) 716
BisI GCNGC 5 cut(s) 141, 201, 666, 988, 1101
BlsI GCNGC 5 cut(s) 142, 202, 667, 989, 1102
Bme1390I CCNGG 1 cut(s) 229
Bme18I GGWCC 1 cut(s) 1057
BmgT120I GGNCC 3 cut(s) 368, 502, 1057
BmiI GGNNCC 1 cut(s) 617
BmrFI CCNGG 1 cut(s) 229
BmsI GCATC 6 cut(s) 271, 332, 609, 647, 1120, 1322
BpiI GAAGAC 1 cut(s) 1299
Bpu10I CCTNAGC 1 cut(s) 144
BpuMI CCSGG 1 cut(s) 229
BsaBI GATNNNNATC 1 cut(s) 81
BsaI GGTCTC 2 cut(s) 555, 824
BsaJI CCNNGG 4 cut(s) 189, 258, 726, 1086
BsaWI WCCGGW 2 cut(s) 362, 568
Bsc4I CCNNNNNNNGG 5 cut(s) 234, 571, 826, 1178, 1205
Bse1I ACTGG 1 cut(s) 394
Bse21I CCTNAGG 1 cut(s) 899
Bse3DI GCAATG 1 cut(s) 660
Bse8I GATNNNNATC 1 cut(s) 81
BseDI CCNNGG 4 cut(s) 189, 258, 726, 1086
BseGI GGATG 4 cut(s) 30, 286, 418, 1040
BseJI GATNNNNATC 1 cut(s) 81
BseLI CCNNNNNNNGG 5 cut(s) 234, 571, 826, 1178, 1205
BseMI GCAATG 1 cut(s) 660
BseMII CTCAG 6 cut(s) 158, 276, 389, 834, 885, 890
BseNI ACTGG 1 cut(s) 394
BseRI GAGGAG 3 cut(s) 290, 512, 573
BseXI GCAGC 4 cut(s) 127, 652, 999, 1087
Bsh1236I CGCG 4 cut(s) 200, 645, 771, 780
BshFI GGCC 5 cut(s) 149, 203, 263, 369, 504
BsiSI CCGG 3 cut(s) 228, 363, 569
BslFI GGGAC 1 cut(s) 588
BslI CCNNNNNNNGG 5 cut(s) 234, 571, 826, 1178, 1205
BsmAI GTCTC 2 cut(s) 555, 824
BsmFI GGGAC 1 cut(s) 588
BsnI GGCC 5 cut(s) 149, 203, 263, 369, 504
Bso31I GGTCTC 2 cut(s) 555, 824
Bsp1286I GDGCHC 1 cut(s) 620
Bsp143I GATC 2 cut(s) 712, 1071
Bsp68I TCGCGA 3 cut(s) 645, 771, 780
BspACI CCGC 4 cut(s) 200, 347, 430, 1022
BspANI GGCC 5 cut(s) 149, 203, 263, 369, 504
BspCNI CTCAG 6 cut(s) 157, 277, 388, 835, 884, 891
BspFNI CGCG 4 cut(s) 200, 645, 771, 780
BspLI GGNNCC 1 cut(s) 617
BspTNI GGTCTC 2 cut(s) 555, 824
BsrBI CCGCTC 1 cut(s) 349
BsrDI GCAATG 1 cut(s) 660
BsrI ACTGG 1 cut(s) 394
BssECI CCNNGG 4 cut(s) 189, 258, 726, 1086
BssMI GATC 2 cut(s) 712, 1071
BssSI CACGAG 1 cut(s) 882
BssT1I CCWWGG 4 cut(s) 189, 258, 726, 1086
Bst2BI CACGAG 1 cut(s) 882
Bst4CI ACNGT 2 cut(s) 703, 893
Bst6I CTCTTC 3 cut(s) 45, 267, 550
BstAPI GCANNNNNTGC 2 cut(s) 665, 1319
BstDEI CTNAG 8 cut(s) 144, 285, 375, 686, 843, 871, 899, 980
BstENI CCTNNNNNAGG 2 cut(s) 1176, 1203
BstF5I GGATG 4 cut(s) 30, 286, 418, 1040
BstFNI CGCG 4 cut(s) 200, 645, 771, 780
BstH2I RGCGCY 1 cut(s) 766
BstHHI GCGC 2 cut(s) 765, 1003
BstKTI GATC 2 cut(s) 715, 1074
BstMAI GTCTC 2 cut(s) 555, 824
BstMBI GATC 2 cut(s) 712, 1071
BstSCI CCNGG 1 cut(s) 227
BstSFI CTRYAG 4 cut(s) 1176, 1203, 1230, 1284
BstUI CGCG 4 cut(s) 200, 645, 771, 780
BstV1I GCAGC 4 cut(s) 127, 652, 999, 1087
BstV2I GAAGAC 1 cut(s) 1299
Bsu36I CCTNAGG 1 cut(s) 899
BsuRI GGCC 5 cut(s) 149, 203, 263, 369, 504
BtsCI GGATG 4 cut(s) 30, 286, 418, 1040
BtuMI TCGCGA 3 cut(s) 645, 771, 780
CaiI CAGNNNCTG 1 cut(s) 1283
CfoI GCGC 2 cut(s) 765, 1003
Cfr13I GGNCC 3 cut(s) 368, 502, 1057
Csp6I GTAC 1 cut(s) 7
CviQI GTAC 1 cut(s) 7
DdeI CTNAG 8 cut(s) 144, 285, 375, 686, 843, 871, 899, 980
DpnI GATC 2 cut(s) 714, 1073
DpnII GATC 2 cut(s) 712, 1071
Eam1104I CTCTTC 3 cut(s) 45, 267, 550
EarI CTCTTC 3 cut(s) 45, 267, 550
Eco130I CCWWGG 4 cut(s) 189, 258, 726, 1086
Eco24I GRGCYC 1 cut(s) 620
Eco31I GGTCTC 2 cut(s) 555, 824
Eco32I GATATC 1 cut(s) 1165
Eco47I GGWCC 1 cut(s) 1057
Eco57I CTGAAG 1 cut(s) 1014
Eco81I CCTNAGG 1 cut(s) 899
EcoNI CCTNNNNNAGG 2 cut(s) 1176, 1203
EcoO109I RGGNCCY 1 cut(s) 1057
EcoRV GATATC 1 cut(s) 1165
EcoT14I CCWWGG 4 cut(s) 189, 258, 726, 1086
EcoT38I GRGCYC 1 cut(s) 620
ErhI CCWWGG 4 cut(s) 189, 258, 726, 1086
FaiI YATR 7 cut(s) 80, 207, 320, 597, 877, 879, 1070
FaqI GGGAC 1 cut(s) 588
Fnu4HI GCNGC 5 cut(s) 141, 201, 666, 988, 1101
FokI GGATG 4 cut(s) 37, 293, 405, 1027
FriOI GRGCYC 1 cut(s) 620
Fsp4HI GCNGC 5 cut(s) 141, 201, 666, 988, 1101
FspBI CTAG 2 cut(s) 612, 746
FspI TGCGCA 1 cut(s) 1002
GlaI GCGC 2 cut(s) 764, 1002
GluI GCNGC 5 cut(s) 141, 201, 666, 988, 1101
HaeII RGCGCY 1 cut(s) 766
HaeIII GGCC 5 cut(s) 149, 203, 263, 369, 504
HapII CCGG 3 cut(s) 228, 363, 569
HhaI GCGC 2 cut(s) 765, 1003
Hin6I GCGC 2 cut(s) 763, 1001
HinP1I GCGC 2 cut(s) 763, 1001
HindIII AAGCTT 1 cut(s) 585
HinfI GANTC 6 cut(s) 82, 212, 447, 775, 814, 1280
HpaII CCGG 3 cut(s) 228, 363, 569
HphI GGTGA 5 cut(s) 318, 336, 485, 1068, 1161
Hpy166II GTNNAC 3 cut(s) 68, 793, 973
Hpy188I TCNGA 4 cut(s) 403, 539, 955, 1162
Hpy188III TCNNGA 6 cut(s) 269, 484, 644, 770, 779, 898
Hpy8I GTNNAC 3 cut(s) 68, 793, 973
Hpy99I CGWCG 1 cut(s) 650
HpyAV CCTTC 9 cut(s) 9, 117, 481, 776, 778, 841, 1182, 1209, 1236
HpyCH4III ACNGT 2 cut(s) 703, 893
HpyCH4IV ACGT 1 cut(s) 648
HpyCH4V TGCA 6 cut(s) 103, 425, 653, 881, 934, 1313
HpyF3I CTNAG 8 cut(s) 144, 285, 375, 686, 843, 871, 899, 980
HpySE526I ACGT 1 cut(s) 648
HspAI GCGC 2 cut(s) 763, 1001
Kzo9I GATC 2 cut(s) 712, 1071
LmnI GCTCC 1 cut(s) 615
Lsp1109I GCAGC 4 cut(s) 127, 652, 999, 1087
LweI GCATC 6 cut(s) 271, 332, 609, 647, 1120, 1322
MaeI CTAG 2 cut(s) 612, 746
MaeII ACGT 1 cut(s) 648
MaeIII GTNAC 3 cut(s) 473, 678, 1147
MalI GATC 2 cut(s) 714, 1073
MbiI CCGCTC 1 cut(s) 349
MboI GATC 2 cut(s) 712, 1071
MfeI CAATTG 1 cut(s) 510
MhlI GDGCHC 1 cut(s) 620
MluCI AATT 4 cut(s) 332, 510, 546, 906
MlyI GAGTC 1 cut(s) 784
MmeI TCCRAC 1 cut(s) 807
MroXI GAANNNNTTC 1 cut(s) 893
MseI TTAA 5 cut(s) 120, 462, 705, 1110, 1245
MspI CCGG 3 cut(s) 228, 363, 569
MspR9I CCNGG 1 cut(s) 229
MunI CAATTG 1 cut(s) 510
MvnI CGCG 4 cut(s) 200, 645, 771, 780
NciI CCSGG 1 cut(s) 229
NdeII GATC 2 cut(s) 712, 1071
NlaIV GGNNCC 1 cut(s) 617
NmuCI GTSAC 2 cut(s) 473, 1147
NruI TCGCGA 3 cut(s) 645, 771, 780
NsbI TGCGCA 1 cut(s) 1002
PcsI WCGNNNNNNNCGW 1 cut(s) 889
PdmI GAANNNNTTC 1 cut(s) 893
PfeI GAWTC 5 cut(s) 82, 212, 447, 814, 1280
PflMI CCANNNNNTGG 1 cut(s) 826
PkrI GCNGC 5 cut(s) 142, 202, 667, 989, 1102
PleI GAGTC 1 cut(s) 783
PpsI GAGTC 1 cut(s) 783
PpuMI RGGWCCY 1 cut(s) 1057
Psp5II RGGWCCY 1 cut(s) 1057
PspN4I GGNNCC 1 cut(s) 617
PspPI GGNCC 3 cut(s) 368, 502, 1057
PspPPI RGGWCCY 1 cut(s) 1057
PstNI CAGNNNCTG 1 cut(s) 1283
RruI TCGCGA 3 cut(s) 645, 771, 780
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
SaqAI TTAA 5 cut(s) 120, 462, 705, 1110, 1245
SatI GCNGC 5 cut(s) 141, 201, 666, 988, 1101
Sau3AI GATC 2 cut(s) 712, 1071
Sau96I GGNCC 3 cut(s) 368, 502, 1057
SchI GAGTC 1 cut(s) 784
ScrFI CCNGG 1 cut(s) 229
SduI GDGCHC 1 cut(s) 620
SfaNI GCATC 6 cut(s) 271, 332, 609, 647, 1120, 1322
SfcI CTRYAG 4 cut(s) 1176, 1203, 1230, 1284
SinI GGWCC 1 cut(s) 1057
Sse9I AATT 4 cut(s) 332, 510, 546, 906
SsiI CCGC 4 cut(s) 200, 347, 430, 1022
SspMI CTAG 2 cut(s) 612, 746
StyD4I CCNGG 1 cut(s) 227
StyI CCWWGG 4 cut(s) 189, 258, 726, 1086
TaaI ACNGT 2 cut(s) 703, 893
TaiI ACGT 1 cut(s) 651
TaqI TCGA 4 cut(s) 184, 250, 483, 853
TasI AATT 4 cut(s) 332, 510, 546, 906
TauI GCSGC 1 cut(s) 203
TfiI GAWTC 5 cut(s) 82, 212, 447, 814, 1280
Tru1I TTAA 5 cut(s) 120, 462, 705, 1110, 1245
Tru9I TTAA 5 cut(s) 120, 462, 705, 1110, 1245
TseFI GTSAC 2 cut(s) 473, 1147
TseI GCWGC 4 cut(s) 140, 665, 987, 1100
Tsp45I GTSAC 2 cut(s) 473, 1147
TspDTI ATGAA 6 cut(s) 50, 95, 189, 204, 222, 1053
Van91I CCANNNNNTGG 1 cut(s) 826
VpaK11BI GGWCC 1 cut(s) 1057
XagI CCTNNNNNAGG 2 cut(s) 1176, 1203
XapI RAATTY 1 cut(s) 546
XmnI GAANNNNTTC 1 cut(s) 893
XspI CTAG 2 cut(s) 612, 746
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.