AT1G30545

BEST Arabidopsis thaliana protein match is WW domain-containing protein (TAIR AT1G45231.2)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007787
Physical Location & Seq
Reverse (-)
10819495 .. 10822055
2561 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G30545.1

Sequence Viewer

Length: 369 bp
ATGAACAATGCCATGGTTTATGGAGTTGCTAATCGTGTTGATTTTGTCATTGGTGATTTCATACAATTAGCTCCTTCTCTCAAAGGAGATGTAGTGTTTCTTTCACCACCATGGGGAGGACCAATGTATAGAGATTTTGAGAGTTACAATTTGGATATGCTTCAACCAAGAGACGGGTACTCATTGTTTCAGATTGCTCAGTCCATTACACCTAACATCATTATGTTTCTACCGCGAAATGTTGATTTAGCACAAGTGGAAGAACTAGCTTGGCTCTCGTCGCCTCCGTTAAATCTTGAGATAGAAGAAAACTTTGTTGGAGGCAGAATGAAAGCTGTAACAGCTTATTTTAGTTGCAATGCAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
Methyltransf_15

Protein Analysis

122

Amino Acids

13.67

Weight (kDa)

4.32

Isoelectric Point (pI)

43.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_15 PF09445 2 - 119 2.3e-26 RNA cap guanine-N2 methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 235
AciI CCGC 1 cut(s) 233
AfaI GTAC 1 cut(s) 179
AfiI CCNNNNNNNGG 3 cut(s) 113, 116, 173
AgsI TTSAA 1 cut(s) 164
AjuI GAANNNNNNNTTGG 2 cut(s) 300, 332
AluBI AGCT 4 cut(s) 71, 269, 335, 344
AluI AGCT 4 cut(s) 71, 269, 335, 344
Alw26I GTCTC 1 cut(s) 165
AspS9I GGNCC 1 cut(s) 119
AsuHPI GGTGA 2 cut(s) 65, 96
AvaII GGWCC 1 cut(s) 119
BcoDI GTCTC 1 cut(s) 165
BfaI CTAG 1 cut(s) 266
Bme18I GGWCC 1 cut(s) 119
BmgT120I GGNCC 1 cut(s) 119
BpuEI CTTGAG 1 cut(s) 317
BsaJI CCNNGG 2 cut(s) 12, 110
BsaXI ACNNNNNCTCC 2 cut(s) 78, 108
Bsc4I CCNNNNNNNGG 3 cut(s) 113, 116, 173
Bse3DI GCAATG 1 cut(s) 364
BseDI CCNNGG 2 cut(s) 12, 110
BseLI CCNNNNNNNGG 3 cut(s) 113, 116, 173
BseMI GCAATG 1 cut(s) 364
BseMII CTCAG 1 cut(s) 212
Bsh1236I CGCG 1 cut(s) 235
BslI CCNNNNNNNGG 3 cut(s) 113, 116, 173
BsmAI GTCTC 1 cut(s) 165
BsmBI CGTCTC 1 cut(s) 165
Bsp19I CCATGG 2 cut(s) 12, 110
BspACI CCGC 1 cut(s) 233
BspCNI CTCAG 1 cut(s) 211
BspFNI CGCG 1 cut(s) 235
BsrDI GCAATG 1 cut(s) 364
BssECI CCNNGG 2 cut(s) 12, 110
BssT1I CCWWGG 2 cut(s) 12, 110
BstDEI CTNAG 1 cut(s) 198
BstDSI CCRYGG 2 cut(s) 12, 110
BstFNI CGCG 1 cut(s) 235
BstMAI GTCTC 1 cut(s) 165
BstMWI GCNNNNNNNGC 2 cut(s) 280, 341
BstUI CGCG 1 cut(s) 235
BtgI CCRYGG 2 cut(s) 12, 110
Cfr13I GGNCC 1 cut(s) 119
Csp6I GTAC 1 cut(s) 178
CviAII CATG 2 cut(s) 13, 111
CviJI RGCY 5 cut(s) 71, 269, 274, 335, 344
CviKI_1 RGCY 5 cut(s) 71, 269, 274, 335, 344
CviQI GTAC 1 cut(s) 178
DdeI CTNAG 1 cut(s) 198
Eco130I CCWWGG 2 cut(s) 12, 110
Eco47I GGWCC 1 cut(s) 119
EcoT14I CCWWGG 2 cut(s) 12, 110
ErhI CCWWGG 2 cut(s) 12, 110
Esp3I CGTCTC 1 cut(s) 165
FaeI CATG 2 cut(s) 16, 114
FaiI YATR 7 cut(s) 14, 21, 62, 112, 129, 158, 224
FatI CATG 2 cut(s) 12, 110
FspBI CTAG 1 cut(s) 266
Hin1II CATG 2 cut(s) 16, 114
HphI GGTGA 2 cut(s) 65, 96
Hpy188I TCNGA 1 cut(s) 192
Hpy188III TCNNGA 1 cut(s) 296
Hpy99I CGWCG 1 cut(s) 283
HpyAV CCTTC 1 cut(s) 84
HpyCH4V TGCA 2 cut(s) 357, 362
HpyF10VI GCNNNNNNNGC 2 cut(s) 280, 341
HpyF3I CTNAG 1 cut(s) 198
Hsp92II CATG 2 cut(s) 16, 114
LmnI GCTCC 1 cut(s) 76
MaeI CTAG 1 cut(s) 266
MaeIII GTNAC 2 cut(s) 143, 337
MboII GAAGA 2 cut(s) 272, 317
MluCI AATT 2 cut(s) 65, 148
MmeI TCCRAC 1 cut(s) 298
MnlI CCTC 3 cut(s) 110, 294, 314
MseI TTAA 1 cut(s) 290
MslI CAYNNNNRTG 2 cut(s) 109, 221
MvnI CGCG 1 cut(s) 235
MwoI GCNNNNNNNGC 2 cut(s) 280, 341
NcoI CCATGG 2 cut(s) 12, 110
NlaIII CATG 2 cut(s) 16, 114
PcsI WCGNNNNNNNCGW 1 cut(s) 284
PspPI GGNCC 1 cut(s) 119
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
RseI CAYNNNNRTG 2 cut(s) 109, 221
SaqAI TTAA 1 cut(s) 290
Sau96I GGNCC 1 cut(s) 119
SetI ASST 5 cut(s) 73, 214, 271, 337, 346
SinI GGWCC 1 cut(s) 119
SmiMI CAYNNNNRTG 2 cut(s) 109, 221
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
Sse9I AATT 2 cut(s) 65, 148
SsiI CCGC 1 cut(s) 233
SspMI CTAG 1 cut(s) 266
StyI CCWWGG 2 cut(s) 12, 110
TasI AATT 2 cut(s) 65, 148
Tru1I TTAA 1 cut(s) 290
Tru9I TTAA 1 cut(s) 290
TspDTI ATGAA 3 cut(s) 17, 49, 344
TspGWI ACGGA 1 cut(s) 276
VpaK11BI GGWCC 1 cut(s) 119
XspI CTAG 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.