Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0007787

Physical Location & Seq

Genomic Coordinates Reverse (-)

37568921 .. 37573555

Gene Structure 4635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00112410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGAAGACGAAGAAGTCTTCAAAGCAGCGAAGGACTCGTCGCTCTAAAAGGTCCAAGCTTTTGCAACTGCCAACTCAAACCCATGAGACAAGGAGAGTAATTGAAGAAGGGGTGAGCCCTCTTGTTGAGAAGTACTGGTTTCAAAGATATGATCTTTTCTCTAGGTATGATGAGGGGATCAAAATGGATGAACAGGGCTGGTACTCTGTCACTCCTGAACAGATTGCAATTAGACAAGCCAAGAGGTGTGAAAACGCAACTGTCGTTATTGATTGCTTCGCCGGCGTCGGAGGCAATGCCATTCAATTTGCTTCACTGTGTTATCATGTTGTTGCTATTGAAATTGATCCCCTTAAAGTTAATATGGCCATTAACAATGCAAGAATATATGGAGTGGAAGATAACATTGATTTCATTGTTGGAGACTTTTTCCAACTTGCACCATCATTGAAGGGGGACATAGTGTTTCTTTCACCACCTTGGGGAGGCCCGTCTTACAGAAGAGTGAAGAAATTTACACTGGACTTACTCGAGCCAAAAGATGGATATGCCATATTTCAAGCTGCTCAAGAGATAACGCCCAACATCATTATGTTCTTACCTCGAAATGTAGACTTACTCCAAGTTGAAGAACTCTGTTGGTTGTCTTCTCCTCCTTTAGAATTTGAGATTGAAGAAAATTATGTGCAGGGCAACTTAAAGGGTGTAACAGTCTACTTTGGTGGTGCAGCAGCCAGTCAATGCGGAGCATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Methyltransf_15

Protein Analysis

251

Amino Acids

28.47

Weight (kDa)

6.75

Isoelectric Point (pI)

59.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRM5-TYW2_MTfase	PF02475	68 - 157	5.2e-10	TRM5/TYW2 methyltransferase domain
Methyltransf_31	PF13847	86 - 155	7.9e-06	Methyltransferase domain
Methyltransf_15	PF09445	87 - 242	1.7e-40	RNA cap guanine-N2 methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30545 AT1G30545 AT1G30550 AT1G30550
fragaria_vesca	FvH4_6g28100 FvH4_6g28100
malus_domestica	MD17G1227900.v1.1 MD17G1228200.v1.1
prunus_persica	Prupe.3G105200_v2.0.a1 Prupe.3G105200_v2.0.a1 Prupe.3G105200_v2.0.a1 Prupe.3G105200_v2.0.a1
pyrus_communis	pycom17g23080
rosa_chinensis	RchiOBHm_Chr2g0132081
rosa_laevigata	RLG00000019224
rosa_multiflora	Rmu_sc0012889.1_g000001 Rmu_ssc0000143.1_g000004
rosa_roxburghii	Rroxscaffold_2G00112410 Rroxscaffold_2G00117510
rosa_rugosa	Rorug02G0301900
rosa_samantha	Rh2AG355000 Rh2BG361400 Rh2DG377800
rosa_wichuraiana	Rw2G028820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	13
AccB7I	CCANNNNNTGG	1 cut(s)	542
AccI	GTMKAC	2 cut(s)	612, 714
AciI	CCGC	1 cut(s)	744
AclWI	GGATC	2 cut(s)	185, 341
AcoI	YGGCCR	1 cut(s)	366
AcsI	RAATTY	2 cut(s)	512, 662
AcyI	GRCGYC	1 cut(s)	285
AfaI	GTAC	2 cut(s)	134, 203
AfiI	CCNNNNNNNGG	3 cut(s)	482, 485, 542
AgsI	TTSAA	9 cut(s)	21, 104, 143, 305, 341, 451, 560, 629, 674
AluBI	AGCT	2 cut(s)	58, 563
AluI	AGCT	2 cut(s)	58, 563
Alw26I	GTCTC	2 cut(s)	80, 417
AlwI	GGATC	2 cut(s)	185, 341
Ama87I	CYCGRG	1 cut(s)	530
AoxI	GGCC	2 cut(s)	366, 487
ApeKI	GCWGC	4 cut(s)	25, 563, 728, 731
ApoI	RAATTY	2 cut(s)	512, 662
ArsI	GACNNNNNNTTYG	2 cut(s)	22, 54
AspS9I	GGNCC	2 cut(s)	51, 488
AsuHPI	GGTGA	2 cut(s)	124, 465
AvaI	CYCGRG	1 cut(s)	530
AvaII	GGWCC	1 cut(s)	51
BalI	TGGCCA	1 cut(s)	368
BanII	GRGCYC	1 cut(s)	119
BbsI	GAAGAC	3 cut(s)	9, 11, 639
BbvI	GCAGC	4 cut(s)	37, 550, 740, 743
BccI	CCATC	2 cut(s)	451, 536
BcoDI	GTCTC	2 cut(s)	80, 417
BfaI	CTAG	1 cut(s)	162
BisI	GCNGC	4 cut(s)	26, 564, 729, 732
BlsI	GCNGC	4 cut(s)	27, 565, 730, 733
BmcAI	AGTACT	1 cut(s)	134
Bme18I	GGWCC	1 cut(s)	51
BmeT110I	CYCGRG	1 cut(s)	530
BmgT120I	GGNCC	2 cut(s)	51, 488
BpiI	GAAGAC	3 cut(s)	9, 11, 639
BpuEI	CTTGAG	1 cut(s)	552
BsaHI	GRCGYC	1 cut(s)	285
BsaJI	CCNNGG	1 cut(s)	479
Bsc4I	CCNNNNNNNGG	3 cut(s)	482, 485, 542
Bse118I	RCCGGY	1 cut(s)	281
Bse1I	ACTGG	3 cut(s)	140, 525, 735
Bse3DI	GCAATG	1 cut(s)	301
BseDI	CCNNGG	1 cut(s)	479
BseGI	GGATG	1 cut(s)	193
BseLI	CCNNNNNNNGG	3 cut(s)	482, 485, 542
BseMI	GCAATG	1 cut(s)	301
BseNI	ACTGG	3 cut(s)	140, 525, 735
BseRI	GAGGAG	1 cut(s)	642
BseXI	GCAGC	4 cut(s)	37, 550, 740, 743
BsgI	GTGCAG	2 cut(s)	707, 747
BshFI	GGCC	2 cut(s)	368, 489
BsiHKCI	CYCGRG	1 cut(s)	530
BsiSI	CCGG	1 cut(s)	282
BslFI	GGGAC	1 cut(s)	470
BslI	CCNNNNNNNGG	3 cut(s)	482, 485, 542
BsmAI	GTCTC	2 cut(s)	80, 417
BsmFI	GGGAC	1 cut(s)	470
BsnI	GGCC	2 cut(s)	368, 489
BsoBI	CYCGRG	1 cut(s)	530
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp143I	GATC	3 cut(s)	151, 177, 346
BspACI	CCGC	1 cut(s)	744
BspANI	GGCC	2 cut(s)	368, 489
BspPI	GGATC	2 cut(s)	185, 341
BsrDI	GCAATG	1 cut(s)	301
BsrFI	RCCGGY	1 cut(s)	281
BsrI	ACTGG	3 cut(s)	140, 525, 735
BssAI	RCCGGY	1 cut(s)	281
BssECI	CCNNGG	1 cut(s)	479
BssMI	GATC	3 cut(s)	151, 177, 346
BssNI	GRCGYC	1 cut(s)	285
BssT1I	CCWWGG	1 cut(s)	479
Bst4CI	ACNGT	3 cut(s)	262, 318, 712
Bst6I	CTCTTC	1 cut(s)	496
BstACI	GRCGYC	1 cut(s)	285
BstC8I	GCNNGC	1 cut(s)	283
BstENI	CCTNNNNNAGG	1 cut(s)	483
BstF5I	GGATG	1 cut(s)	193
BstKTI	GATC	3 cut(s)	154, 180, 349
BstMAI	GTCTC	2 cut(s)	80, 417
BstMBI	GATC	3 cut(s)	151, 177, 346
BstMWI	GCNNNNNNNGC	2 cut(s)	282, 291
BstV1I	GCAGC	4 cut(s)	37, 550, 740, 743
BstV2I	GAAGAC	3 cut(s)	9, 11, 639
BsuRI	GGCC	2 cut(s)	368, 489
BtsCI	GGATG	1 cut(s)	193
BtsIMutI	CAGTG	2 cut(s)	314, 518
Cac8I	GCNNGC	1 cut(s)	283
Cfr10I	RCCGGY	1 cut(s)	281
Cfr13I	GGNCC	2 cut(s)	51, 488
CseI	GACGC	1 cut(s)	274
Csp6I	GTAC	2 cut(s)	133, 202
CviAII	CATG	2 cut(s)	83, 326
CviJI	RGCY	9 cut(s)	58, 117, 198, 239, 368, 489, 535, 563, 734
CviKI_1	RGCY	9 cut(s)	58, 117, 198, 239, 368, 489, 535, 563, 734
CviQI	GTAC	2 cut(s)	133, 202
DpnI	GATC	3 cut(s)	153, 179, 348
DpnII	GATC	3 cut(s)	151, 177, 346
DrdI	GACNNNNNNGTC	1 cut(s)	13
DseDI	GACNNNNNNGTC	1 cut(s)	13
EaeI	YGGCCR	1 cut(s)	366
Eam1104I	CTCTTC	1 cut(s)	496
EarI	CTCTTC	1 cut(s)	496
Eco130I	CCWWGG	1 cut(s)	479
Eco24I	GRGCYC	1 cut(s)	119
Eco47I	GGWCC	1 cut(s)	51
Eco88I	CYCGRG	1 cut(s)	530
EcoNI	CCTNNNNNAGG	1 cut(s)	483
EcoT14I	CCWWGG	1 cut(s)	479
EcoT38I	GRGCYC	1 cut(s)	119
ErhI	CCWWGG	1 cut(s)	479
FaeI	CATG	2 cut(s)	86, 329
FaqI	GGGAC	1 cut(s)	470
FatI	CATG	2 cut(s)	82, 325
FblI	GTMKAC	2 cut(s)	612, 714
Fnu4HI	GCNGC	4 cut(s)	26, 564, 729, 732
FokI	GGATG	1 cut(s)	200
FriOI	GRGCYC	1 cut(s)	119
Fsp4HI	GCNGC	4 cut(s)	26, 564, 729, 732
FspBI	CTAG	1 cut(s)	162
GluI	GCNGC	4 cut(s)	26, 564, 729, 732
HaeIII	GGCC	2 cut(s)	368, 489
HapII	CCGG	1 cut(s)	282
HgaI	GACGC	1 cut(s)	274
Hin1I	GRCGYC	1 cut(s)	285
Hin1II	CATG	2 cut(s)	86, 329
HindIII	AAGCTT	1 cut(s)	56
HinfI	GANTC	1 cut(s)	34
HpaII	CCGG	1 cut(s)	282
HphI	GGTGA	2 cut(s)	124, 465
Hpy166II	GTNNAC	2 cut(s)	613, 715
Hpy188I	TCNGA	1 cut(s)	290
Hpy188III	TCNNGA	2 cut(s)	215, 569
Hpy8I	GTNNAC	2 cut(s)	613, 715
Hpy99I	CGWCG	2 cut(s)	42, 290
HpyAV	CCTTC	3 cut(s)	24, 101, 445
HpyCH4III	ACNGT	3 cut(s)	262, 318, 712
HpyCH4V	TGCA	6 cut(s)	64, 227, 380, 440, 688, 728
HpyF10VI	GCNNNNNNNGC	2 cut(s)	282, 291
Hsp92I	GRCGYC	1 cut(s)	285
Hsp92II	CATG	2 cut(s)	86, 329
KroI	GCCGGC	1 cut(s)	281
KroNI	GCCGGC	1 cut(s)	283
Kzo9I	GATC	3 cut(s)	151, 177, 346
LmnI	GCTCC	1 cut(s)	746
LpnPI	CCDG	8 cut(s)	121, 179, 184, 228, 295, 506, 674, 748
Lsp1109I	GCAGC	4 cut(s)	37, 550, 740, 743
MaeI	CTAG	1 cut(s)	162
MaeIII	GTNAC	2 cut(s)	208, 706
MalI	GATC	3 cut(s)	153, 179, 348
MboI	GATC	3 cut(s)	151, 177, 346
MhlI	GDGCHC	1 cut(s)	119
MlsI	TGGCCA	1 cut(s)	368
MluCI	AATT	7 cut(s)	99, 228, 305, 342, 512, 662, 679
MluNI	TGGCCA	1 cut(s)	368
MlyI	GAGTC	1 cut(s)	28
MmeI	TCCRAC	3 cut(s)	268, 400, 457
MnlI	CCTC	7 cut(s)	129, 166, 237, 284, 479, 612, 663
Mox20I	TGGCCA	1 cut(s)	368
MreI	CGCCGGCG	1 cut(s)	281
MroNI	GCCGGC	1 cut(s)	281
MscI	TGGCCA	1 cut(s)	368
MseI	TTAA	4 cut(s)	354, 360, 372, 698
MslI	CAYNNNNRTG	1 cut(s)	590
Msp20I	TGGCCA	1 cut(s)	368
MspI	CCGG	1 cut(s)	282
MwoI	GCNNNNNNNGC	2 cut(s)	282, 291
NaeI	GCCGGC	1 cut(s)	283
NdeII	GATC	3 cut(s)	151, 177, 346
NgoMIV	GCCGGC	1 cut(s)	281
NlaIII	CATG	2 cut(s)	86, 329
NmuCI	GTSAC	1 cut(s)	208
PaeR7I	CTCGAG	1 cut(s)	530
PcsI	WCGNNNNNNNCGW	1 cut(s)	261
PdiI	GCCGGC	1 cut(s)	283
PflMI	CCANNNNNTGG	1 cut(s)	542
PkrI	GCNGC	4 cut(s)	27, 565, 730, 733
PleI	GAGTC	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	28
PspPI	GGNCC	2 cut(s)	51, 488
PspXI	VCTCGAGB	1 cut(s)	530
RsaI	GTAC	2 cut(s)	134, 203
RsaNI	GTAC	2 cut(s)	133, 202
RseI	CAYNNNNRTG	1 cut(s)	590
SaqAI	TTAA	4 cut(s)	354, 360, 372, 698
SatI	GCNGC	4 cut(s)	26, 564, 729, 732
Sau3AI	GATC	3 cut(s)	151, 177, 346
Sau96I	GGNCC	2 cut(s)	51, 488
ScaI	AGTACT	1 cut(s)	134
SchI	GAGTC	1 cut(s)	28
SduI	GDGCHC	1 cut(s)	119
SetI	ASST	7 cut(s)	53, 60, 167, 248, 481, 565, 604
Sfr274I	CTCGAG	1 cut(s)	530
SgrAI	CRCCGGYG	1 cut(s)	281
SinI	GGWCC	1 cut(s)	51
SlaI	CTCGAG	1 cut(s)	530
SmiMI	CAYNNNNRTG	1 cut(s)	590
SmlI	CTYRAG	2 cut(s)	530, 567
SmoI	CTYRAG	2 cut(s)	530, 567
Sse9I	AATT	7 cut(s)	99, 228, 305, 342, 512, 662, 679
SsiI	CCGC	1 cut(s)	744
SspMI	CTAG	1 cut(s)	162
StyI	CCWWGG	1 cut(s)	479
TaaI	ACNGT	3 cut(s)	262, 318, 712
TaqI	TCGA	2 cut(s)	531, 604
TasI	AATT	7 cut(s)	99, 228, 305, 342, 512, 662, 679
TatI	WGTACW	1 cut(s)	132
Tru1I	TTAA	4 cut(s)	354, 360, 372, 698
Tru9I	TTAA	4 cut(s)	354, 360, 372, 698
TscAI	CASTG	2 cut(s)	321, 525
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	4 cut(s)	25, 563, 728, 731
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	3 cut(s)	17, 204, 403
TspRI	CASTG	2 cut(s)	321, 525
Van91I	CCANNNNNTGG	1 cut(s)	542
VpaK11BI	GGWCC	1 cut(s)	51
XagI	CCTNNNNNAGG	1 cut(s)	483
XapI	RAATTY	2 cut(s)	512, 662
XhoI	CTCGAG	1 cut(s)	530
XmiI	GTMKAC	2 cut(s)	612, 714
XspI	CTAG	1 cut(s)	162
ZrmI	AGTACT	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.