Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0007787

Physical Location & Seq

Genomic Coordinates Reverse (-)

45672622 .. 45673218

Gene Structure 597 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00117510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGAAGACGAAGAAGTCTTCAAAGCAGCGAAGGACTCGTTGCTCTAAAAGGTATGATGAGGGGATCAAGTTGGATGAACAGGGCTGGTACTCTGTCACTCCTGAACAGATTGCAATTGGACAAGCCAAGAGGTGTGAAAACGCAACTGTCATTATTGATTTCTTTGCCGGCGTCGGAGGCAATGCCATTCAATTTGCTTCACTGTGTTATCATGTTGTTGCTATTGAAATTGATTCCCTTAAAGTTAATATGGCCATTAACAATGCAAGAATATTTGGAGTGGAAGATAACATTGATTTCATTGTCGGAGACTTTTTCCAACTTGCACCATCATTGAAGGGGGACATAGTGTTTCTTTCACAGCCTTGGGAAGGCCCGTCTTACAGAAGAGTGAAGAAATTTACACTGGACTTACTCGAGCCAAAAGATGGATATACCATATTTCAAGCTGCTCAAGAGATAACGCCCAACATCATTATGTTCTTACCTCGAAATGTAGACTTACTCCAAGTTGAAGAACTCTGTTGGTTGTCTTCTCCTCCTCTAGAATTTGAGGTGATCAATGGATTGACTTGGTGCACGATGGTAAATCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Methyltransf_15

Protein Analysis

198

Amino Acids

22.5

Weight (kDa)

5.55

Isoelectric Point (pI)

45.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRM5-TYW2_MTfase	PF02475	42 - 122	5.4e-08	TRM5/TYW2 methyltransferase domain
Methyltransf_31	PF13847	48 - 120	9.5e-06	Methyltransferase domain
Methyltransf_15	PF09445	49 - 174	5e-35	RNA cap guanine-N2 methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30545 AT1G30545 AT1G30550 AT1G30550
fragaria_vesca	FvH4_6g28100 FvH4_6g28100
malus_domestica	MD17G1227900.v1.1 MD17G1228200.v1.1
prunus_persica	Prupe.3G105200_v2.0.a1 Prupe.3G105200_v2.0.a1 Prupe.3G105200_v2.0.a1 Prupe.3G105200_v2.0.a1
pyrus_communis	pycom17g23080
rosa_chinensis	RchiOBHm_Chr2g0132081
rosa_laevigata	RLG00000019224
rosa_multiflora	Rmu_sc0012889.1_g000001 Rmu_ssc0000143.1_g000004
rosa_roxburghii	Rroxscaffold_2G00112410 Rroxscaffold_2G00117510
rosa_rugosa	Rorug02G0301900
rosa_samantha	Rh2AG355000 Rh2BG361400 Rh2DG377800
rosa_wichuraiana	Rw2G028820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	13
AccB7I	CCANNNNNTGG	1 cut(s)	428
AccI	GTMKAC	1 cut(s)	498
AclWI	GGATC	1 cut(s)	71
AcoI	YGGCCR	1 cut(s)	252
AcsI	RAATTY	2 cut(s)	398, 548
AcyI	GRCGYC	1 cut(s)	171
AfaI	GTAC	1 cut(s)	89
AfiI	CCNNNNNNNGG	2 cut(s)	371, 428
AgsI	TTSAA	6 cut(s)	21, 191, 227, 337, 446, 515
AluBI	AGCT	1 cut(s)	449
AluI	AGCT	1 cut(s)	449
Alw21I	GWGCWC	1 cut(s)	581
Alw26I	GTCTC	1 cut(s)	303
Alw44I	GTGCAC	1 cut(s)	577
AlwI	GGATC	1 cut(s)	71
Ama87I	CYCGRG	1 cut(s)	416
AoxI	GGCC	2 cut(s)	252, 373
ApaLI	GTGCAC	1 cut(s)	577
ApeKI	GCWGC	2 cut(s)	25, 449
ApoI	RAATTY	2 cut(s)	398, 548
AspS9I	GGNCC	1 cut(s)	374
AsuHPI	GGTGA	1 cut(s)	568
AvaI	CYCGRG	1 cut(s)	416
BaeGI	GKGCMC	1 cut(s)	581
BalI	TGGCCA	1 cut(s)	254
BbsI	GAAGAC	3 cut(s)	9, 11, 525
Bbv12I	GWGCWC	1 cut(s)	581
BbvI	GCAGC	2 cut(s)	37, 436
BccI	CCATC	3 cut(s)	337, 422, 577
BclI	TGATCA	1 cut(s)	558
BcoDI	GTCTC	1 cut(s)	303
BfaI	CTAG	1 cut(s)	545
BisI	GCNGC	2 cut(s)	26, 450
BlsI	GCNGC	2 cut(s)	27, 451
BmeT110I	CYCGRG	1 cut(s)	416
BmgT120I	GGNCC	1 cut(s)	374
BpiI	GAAGAC	3 cut(s)	9, 11, 525
BpuEI	CTTGAG	1 cut(s)	438
BsaHI	GRCGYC	1 cut(s)	171
BsaJI	CCNNGG	1 cut(s)	365
Bsc4I	CCNNNNNNNGG	2 cut(s)	371, 428
Bse118I	RCCGGY	1 cut(s)	167
Bse1I	ACTGG	1 cut(s)	411
Bse3DI	GCAATG	1 cut(s)	187
BseDI	CCNNGG	1 cut(s)	365
BseGI	GGATG	1 cut(s)	79
BseLI	CCNNNNNNNGG	2 cut(s)	371, 428
BseMI	GCAATG	1 cut(s)	187
BseNI	ACTGG	1 cut(s)	411
BseRI	GAGGAG	2 cut(s)	528, 531
BseSI	GKGCMC	1 cut(s)	581
BseXI	GCAGC	2 cut(s)	37, 436
BshFI	GGCC	2 cut(s)	254, 375
BsiHKAI	GWGCWC	1 cut(s)	581
BsiHKCI	CYCGRG	1 cut(s)	416
BsiSI	CCGG	1 cut(s)	168
BslFI	GGGAC	1 cut(s)	356
BslI	CCNNNNNNNGG	2 cut(s)	371, 428
BsmAI	GTCTC	1 cut(s)	303
BsmFI	GGGAC	1 cut(s)	356
BsnI	GGCC	2 cut(s)	254, 375
BsoBI	CYCGRG	1 cut(s)	416
Bsp1286I	GDGCHC	1 cut(s)	581
Bsp143I	GATC	2 cut(s)	63, 558
BspANI	GGCC	2 cut(s)	254, 375
BspPI	GGATC	1 cut(s)	71
BsrDI	GCAATG	1 cut(s)	187
BsrFI	RCCGGY	1 cut(s)	167
BsrI	ACTGG	1 cut(s)	411
BssAI	RCCGGY	1 cut(s)	167
BssECI	CCNNGG	1 cut(s)	365
BssMI	GATC	2 cut(s)	63, 558
BssNI	GRCGYC	1 cut(s)	171
BssT1I	CCWWGG	1 cut(s)	365
Bst4CI	ACNGT	2 cut(s)	148, 204
Bst6I	CTCTTC	1 cut(s)	382
BstACI	GRCGYC	1 cut(s)	171
BstC8I	GCNNGC	1 cut(s)	169
BstENI	CCTNNNNNAGG	1 cut(s)	369
BstF5I	GGATG	1 cut(s)	79
BstKTI	GATC	2 cut(s)	66, 561
BstMAI	GTCTC	1 cut(s)	303
BstMBI	GATC	2 cut(s)	63, 558
BstMWI	GCNNNNNNNGC	1 cut(s)	177
BstSLI	GKGCMC	1 cut(s)	581
BstV1I	GCAGC	2 cut(s)	37, 436
BstV2I	GAAGAC	3 cut(s)	9, 11, 525
BsuRI	GGCC	2 cut(s)	254, 375
BtsCI	GGATG	1 cut(s)	79
BtsIMutI	CAGTG	2 cut(s)	200, 404
Cac8I	GCNNGC	1 cut(s)	169
Cfr10I	RCCGGY	1 cut(s)	167
Cfr13I	GGNCC	1 cut(s)	374
CseI	GACGC	1 cut(s)	160
Csp6I	GTAC	1 cut(s)	88
CviAII	CATG	1 cut(s)	212
CviJI	RGCY	7 cut(s)	84, 125, 254, 364, 375, 421, 449
CviKI_1	RGCY	7 cut(s)	84, 125, 254, 364, 375, 421, 449
CviQI	GTAC	1 cut(s)	88
DpnI	GATC	2 cut(s)	65, 560
DpnII	GATC	2 cut(s)	63, 558
DrdI	GACNNNNNNGTC	1 cut(s)	13
DseDI	GACNNNNNNGTC	1 cut(s)	13
EaeI	YGGCCR	1 cut(s)	252
Eam1104I	CTCTTC	1 cut(s)	382
EarI	CTCTTC	1 cut(s)	382
Eco130I	CCWWGG	1 cut(s)	365
Eco88I	CYCGRG	1 cut(s)	416
EcoNI	CCTNNNNNAGG	1 cut(s)	369
EcoT14I	CCWWGG	1 cut(s)	365
ErhI	CCWWGG	1 cut(s)	365
FaeI	CATG	1 cut(s)	215
FaiI	YATR	7 cut(s)	54, 213, 251, 347, 435, 440, 479
FaqI	GGGAC	1 cut(s)	356
FatI	CATG	1 cut(s)	211
FbaI	TGATCA	1 cut(s)	558
FblI	GTMKAC	1 cut(s)	498
Fnu4HI	GCNGC	2 cut(s)	26, 450
FokI	GGATG	1 cut(s)	86
Fsp4HI	GCNGC	2 cut(s)	26, 450
FspBI	CTAG	1 cut(s)	545
GluI	GCNGC	2 cut(s)	26, 450
HaeIII	GGCC	2 cut(s)	254, 375
HapII	CCGG	1 cut(s)	168
HgaI	GACGC	1 cut(s)	160
Hin1I	GRCGYC	1 cut(s)	171
Hin1II	CATG	1 cut(s)	215
HinfI	GANTC	2 cut(s)	34, 233
HpaII	CCGG	1 cut(s)	168
HphI	GGTGA	1 cut(s)	568
Hpy166II	GTNNAC	2 cut(s)	499, 579
Hpy188I	TCNGA	2 cut(s)	176, 308
Hpy188III	TCNNGA	3 cut(s)	101, 455, 545
Hpy8I	GTNNAC	2 cut(s)	499, 579
Hpy99I	CGWCG	1 cut(s)	176
HpyAV	CCTTC	3 cut(s)	24, 331, 365
HpyCH4III	ACNGT	2 cut(s)	148, 204
HpyCH4V	TGCA	4 cut(s)	113, 266, 326, 579
HpyF10VI	GCNNNNNNNGC	1 cut(s)	177
Hsp92I	GRCGYC	1 cut(s)	171
Hsp92II	CATG	1 cut(s)	215
KroI	GCCGGC	1 cut(s)	167
KroNI	GCCGGC	1 cut(s)	169
Ksp22I	TGATCA	1 cut(s)	558
Kzo9I	GATC	2 cut(s)	63, 558
LpnPI	CCDG	5 cut(s)	65, 70, 114, 181, 392
Lsp1109I	GCAGC	2 cut(s)	37, 436
MaeI	CTAG	1 cut(s)	545
MaeIII	GTNAC	1 cut(s)	94
MalI	GATC	2 cut(s)	65, 560
MboI	GATC	2 cut(s)	63, 558
MboII	GAAGA	8 cut(s)	9, 16, 22, 296, 399, 406, 525, 527
MfeI	CAATTG	1 cut(s)	114
MhlI	GDGCHC	1 cut(s)	581
MlsI	TGGCCA	1 cut(s)	254
MluCI	AATT	5 cut(s)	114, 191, 228, 398, 548
MluNI	TGGCCA	1 cut(s)	254
MlyI	GAGTC	1 cut(s)	28
MmeI	TCCRAC	4 cut(s)	51, 154, 286, 343
MnlI	CCTC	7 cut(s)	52, 123, 170, 498, 547, 549, 552
Mox20I	TGGCCA	1 cut(s)	254
MroNI	GCCGGC	1 cut(s)	167
MscI	TGGCCA	1 cut(s)	254
MseI	TTAA	3 cut(s)	240, 246, 258
MslI	CAYNNNNRTG	1 cut(s)	476
Msp20I	TGGCCA	1 cut(s)	254
MspI	CCGG	1 cut(s)	168
MunI	CAATTG	1 cut(s)	114
MwoI	GCNNNNNNNGC	1 cut(s)	177
NaeI	GCCGGC	1 cut(s)	169
NdeII	GATC	2 cut(s)	63, 558
NgoMIV	GCCGGC	1 cut(s)	167
NlaIII	CATG	1 cut(s)	215
NmuCI	GTSAC	1 cut(s)	94
PaeR7I	CTCGAG	1 cut(s)	416
PdiI	GCCGGC	1 cut(s)	169
PfeI	GAWTC	1 cut(s)	233
PflMI	CCANNNNNTGG	1 cut(s)	428
PkrI	GCNGC	2 cut(s)	27, 451
PleI	GAGTC	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	28
PspPI	GGNCC	1 cut(s)	374
PspXI	VCTCGAGB	1 cut(s)	416
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
RseI	CAYNNNNRTG	1 cut(s)	476
SaqAI	TTAA	3 cut(s)	240, 246, 258
SatI	GCNGC	2 cut(s)	26, 450
Sau3AI	GATC	2 cut(s)	63, 558
Sau96I	GGNCC	1 cut(s)	374
SchI	GAGTC	1 cut(s)	28
SduI	GDGCHC	1 cut(s)	581
SetI	ASST	5 cut(s)	53, 134, 451, 490, 558
Sfr274I	CTCGAG	1 cut(s)	416
SlaI	CTCGAG	1 cut(s)	416
SmiMI	CAYNNNNRTG	1 cut(s)	476
SmlI	CTYRAG	2 cut(s)	416, 453
SmoI	CTYRAG	2 cut(s)	416, 453
Sse9I	AATT	5 cut(s)	114, 191, 228, 398, 548
SspI	AATATT	1 cut(s)	273
SspMI	CTAG	1 cut(s)	545
StyI	CCWWGG	1 cut(s)	365
TaaI	ACNGT	2 cut(s)	148, 204
TaqI	TCGA	2 cut(s)	417, 490
TasI	AATT	5 cut(s)	114, 191, 228, 398, 548
TfiI	GAWTC	1 cut(s)	233
Tru1I	TTAA	3 cut(s)	240, 246, 258
Tru9I	TTAA	3 cut(s)	240, 246, 258
TscAI	CASTG	2 cut(s)	207, 411
TseFI	GTSAC	1 cut(s)	94
TseI	GCWGC	2 cut(s)	25, 449
Tsp45I	GTSAC	1 cut(s)	94
TspDTI	ATGAA	3 cut(s)	17, 90, 289
TspRI	CASTG	2 cut(s)	207, 411
Van91I	CCANNNNNTGG	1 cut(s)	428
VneI	GTGCAC	1 cut(s)	577
XagI	CCTNNNNNAGG	1 cut(s)	369
XapI	RAATTY	2 cut(s)	398, 548
XbaI	TCTAGA	1 cut(s)	544
XhoI	CTCGAG	1 cut(s)	416
XmiI	GTMKAC	1 cut(s)	498
XspI	CTAG	1 cut(s)	545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.