Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0007787

Physical Location & Seq

Genomic Coordinates Reverse (-)

8305621 .. 8310526

Gene Structure 4906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G105200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGCAGAAGAAGGCTTCAAGGCGGCGAAGGACTACTTGTCGTCCTAATAAACGCAAGCTCTTACACCTGCCACGTCAAATTCAGAAGAGAAGGAAATTTCTTGAAGAAGGGTTGACTCCCCTTGTTGAGAAGTATTGGTTTCAGAGATATGATCTGTTTTCGAGATACGATGAGGGGATCAAAATGGATGAACAGGGGTGGTACTCTGTCACACCTGAAAAGATTGCAATCACCCACGCCAAGAGGTGTGAAAATGCAACTGTCATCGATTGCTTTGCAGGCGTTGGCGGGAATGCCATTCAGTTTGCTTCAATGTGTTACCATGTTGTTGCTATTGAAATTGATCCCCTTAAAGTTGATATGGCCATTAACAATGCTAAAATATATGGAGTGGAAGATTACATTGATTTCATTGTTGGAGACTTTTTCCAACTTGCACCATCATTGAAGGGGGACGTAGTGTTTCTTTCACCACCTTGGGGAGGCCCATCATACAAATGGGTGAAGAAATTTACACTTGACTTACTCAAGCCAAAAGATGGGTATGCAATATTTCAAGCTGCTCAAGCGATAACGCCCAACATCATTATGTTCTTACCTCGGAATGTAGACTTGCTCCAAGTGGAAGAACTTTGTTGGTTGTCTTCTCCGCCTCTACAAGTTGAGATTGAAGAAAATTATGTGAGGAGCAATTTAAAGGGTGTAACTGTCTACTTTGGTGGCACCGCAGCATCAAGTCAATGTGGGTCATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Methyltransf_15

Protein Analysis

252

Amino Acids

28.63

Weight (kDa)

8.92

Isoelectric Point (pI)

51.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30545 AT1G30545 AT1G30550 AT1G30550
fragaria_vesca	FvH4_6g28100 FvH4_6g28100
malus_domestica	MD17G1227900.v1.1 MD17G1228200.v1.1
prunus_persica	Prupe.3G105200_v2.0.a1 Prupe.3G105200_v2.0.a1 Prupe.3G105200_v2.0.a1 Prupe.3G105200_v2.0.a1
pyrus_communis	pycom17g23080
rosa_chinensis	RchiOBHm_Chr2g0132081
rosa_laevigata	RLG00000019224
rosa_multiflora	Rmu_sc0012889.1_g000001 Rmu_ssc0000143.1_g000004
rosa_roxburghii	Rroxscaffold_2G00112410 Rroxscaffold_2G00117510
rosa_rugosa	Rorug02G0301900
rosa_samantha	Rh2AG355000 Rh2BG361400 Rh2DG377800
rosa_wichuraiana	Rw2G028820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	75
Acc36I	ACCTGC	1 cut(s)	75
AccB1I	GGYRCC	1 cut(s)	722
AccB7I	CCANNNNNTGG	1 cut(s)	539
AccI	GTMKAC	2 cut(s)	609, 711
AciI	CCGC	4 cut(s)	22, 288, 650, 726
AclWI	GGATC	2 cut(s)	185, 338
AcoI	YGGCCR	1 cut(s)	363
AcsI	RAATTY	3 cut(s)	78, 95, 509
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	3 cut(s)	479, 482, 539
AgsI	TTSAA	7 cut(s)	18, 104, 312, 338, 448, 557, 671
AhdI	GACNNNNNGTC	1 cut(s)	36
AjiI	CACGTC	1 cut(s)	74
AluBI	AGCT	2 cut(s)	58, 560
AluI	AGCT	2 cut(s)	58, 560
Alw26I	GTCTC	1 cut(s)	414
AlwI	GGATC	2 cut(s)	185, 338
AoxI	GGCC	2 cut(s)	363, 484
ApeKI	GCWGC	2 cut(s)	560, 728
ApoI	RAATTY	3 cut(s)	78, 95, 509
AspS9I	GGNCC	1 cut(s)	485
AsuHPI	GGTGA	3 cut(s)	223, 462, 514
BalI	TGGCCA	1 cut(s)	365
BanI	GGYRCC	1 cut(s)	722
BbsI	GAAGAC	1 cut(s)	636
BbvI	GCAGC	2 cut(s)	547, 740
BccI	CCATC	3 cut(s)	448, 496, 533
BcgI	CGANNNNNNTGC	2 cut(s)	257, 291
BcoDI	GTCTC	1 cut(s)	414
BfuAI	ACCTGC	1 cut(s)	75
BisI	GCNGC	3 cut(s)	23, 561, 729
BlsI	GCNGC	3 cut(s)	24, 562, 730
BmeRI	GACNNNNNGTC	1 cut(s)	36
BmgBI	CACGTC	1 cut(s)	74
BmgT120I	GGNCC	1 cut(s)	485
BmiI	GGNNCC	1 cut(s)	724
BmsI	GCATC	1 cut(s)	740
BpiI	GAAGAC	1 cut(s)	636
BpuEI	CTTGAG	2 cut(s)	512, 549
Bsa29I	ATCGAT	1 cut(s)	267
BsaBI	GATNNNNATC	1 cut(s)	227
BsaJI	CCNNGG	2 cut(s)	476, 599
Bsc4I	CCNNNNNNNGG	3 cut(s)	479, 482, 539
Bse8I	GATNNNNATC	1 cut(s)	227
BseCI	ATCGAT	1 cut(s)	267
BseDI	CCNNGG	2 cut(s)	476, 599
BseGI	GGATG	1 cut(s)	193
BseJI	GATNNNNATC	1 cut(s)	227
BseLI	CCNNNNNNNGG	3 cut(s)	479, 482, 539
BseRI	GAGGAG	1 cut(s)	700
BseXI	GCAGC	2 cut(s)	547, 740
BshFI	GGCC	2 cut(s)	365, 486
BshNI	GGYRCC	1 cut(s)	722
BshVI	ATCGAT	1 cut(s)	267
BslFI	GGGAC	1 cut(s)	467
BslI	CCNNNNNNNGG	3 cut(s)	479, 482, 539
BsmAI	GTCTC	1 cut(s)	414
BsmFI	GGGAC	1 cut(s)	467
BsmI	GAATGC	1 cut(s)	298
BsnI	GGCC	2 cut(s)	365, 486
Bsp143I	GATC	3 cut(s)	151, 177, 343
BspACI	CCGC	4 cut(s)	22, 288, 650, 726
BspANI	GGCC	2 cut(s)	365, 486
BspDI	ATCGAT	1 cut(s)	267
BspLI	GGNNCC	1 cut(s)	724
BspMI	ACCTGC	1 cut(s)	75
BspPI	GGATC	2 cut(s)	185, 338
BspT107I	GGYRCC	1 cut(s)	722
BssECI	CCNNGG	2 cut(s)	476, 599
BssMI	GATC	3 cut(s)	151, 177, 343
BssT1I	CCWWGG	1 cut(s)	476
Bst4CI	ACNGT	2 cut(s)	262, 709
Bst6I	CTCTTC	1 cut(s)	80
BstC8I	GCNNGC	2 cut(s)	56, 280
BstENI	CCTNNNNNAGG	1 cut(s)	480
BstF5I	GGATG	1 cut(s)	193
BstKTI	GATC	3 cut(s)	154, 180, 346
BstMAI	GTCTC	1 cut(s)	414
BstMBI	GATC	3 cut(s)	151, 177, 343
BstMWI	GCNNNNNNNGC	2 cut(s)	279, 566
BstV1I	GCAGC	2 cut(s)	547, 740
BstV2I	GAAGAC	1 cut(s)	636
Bsu15I	ATCGAT	1 cut(s)	267
BsuRI	GGCC	2 cut(s)	365, 486
BsuTUI	ATCGAT	1 cut(s)	267
BtrI	CACGTC	1 cut(s)	74
BtsCI	GGATG	1 cut(s)	193
BveI	ACCTGC	1 cut(s)	75
Cac8I	GCNNGC	2 cut(s)	56, 280
Cfr13I	GGNCC	1 cut(s)	485
ClaI	ATCGAT	1 cut(s)	267
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	1 cut(s)	323
CviJI	RGCY	6 cut(s)	14, 58, 365, 486, 532, 560
CviKI_1	RGCY	6 cut(s)	14, 58, 365, 486, 532, 560
CviQI	GTAC	1 cut(s)	202
DpnI	GATC	3 cut(s)	153, 179, 345
DpnII	GATC	3 cut(s)	151, 177, 343
DraI	TTTAAA	1 cut(s)	696
DriI	GACNNNNNGTC	1 cut(s)	36
EaeI	YGGCCR	1 cut(s)	363
Eam1104I	CTCTTC	1 cut(s)	80
Eam1105I	GACNNNNNGTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	80
EciI	GGCGGA	1 cut(s)	639
Eco130I	CCWWGG	1 cut(s)	476
EcoNI	CCTNNNNNAGG	1 cut(s)	480
EcoT14I	CCWWGG	1 cut(s)	476
ErhI	CCWWGG	1 cut(s)	476
FaeI	CATG	1 cut(s)	326
FalI	AAGNNNNNCTT	2 cut(s)	19, 51
FaqI	GGGAC	1 cut(s)	467
FatI	CATG	1 cut(s)	322
FauI	CCCGC	1 cut(s)	281
FblI	GTMKAC	2 cut(s)	609, 711
Fnu4HI	GCNGC	3 cut(s)	23, 561, 729
FokI	GGATG	1 cut(s)	200
Fsp4HI	GCNGC	3 cut(s)	23, 561, 729
GluI	GCNGC	3 cut(s)	23, 561, 729
HaeIII	GGCC	2 cut(s)	365, 486
Hin1II	CATG	1 cut(s)	326
HincII	GTYRAC	1 cut(s)	114
HindII	GTYRAC	1 cut(s)	114
HinfI	GANTC	1 cut(s)	115
HphI	GGTGA	3 cut(s)	223, 462, 514
Hpy166II	GTNNAC	3 cut(s)	114, 610, 712
Hpy188I	TCNGA	3 cut(s)	84, 144, 603
Hpy188III	TCNNGA	2 cut(s)	101, 162
Hpy8I	GTNNAC	3 cut(s)	114, 610, 712
HpyAV	CCTTC	5 cut(s)	4, 21, 84, 101, 442
HpyCH4III	ACNGT	2 cut(s)	262, 709
HpyCH4IV	ACGT	2 cut(s)	73, 456
HpyCH4V	TGCA	6 cut(s)	4, 227, 257, 278, 437, 548
HpyF10VI	GCNNNNNNNGC	2 cut(s)	279, 566
HpySE526I	ACGT	2 cut(s)	73, 456
Hsp92II	CATG	1 cut(s)	326
Kzo9I	GATC	3 cut(s)	151, 177, 343
LmnI	GCTCC	2 cut(s)	621, 687
LpnPI	CCDG	4 cut(s)	80, 179, 228, 264
Lsp1109I	GCAGC	2 cut(s)	547, 740
LweI	GCATC	1 cut(s)	740
MaeII	ACGT	2 cut(s)	73, 456
MaeIII	GTNAC	3 cut(s)	208, 317, 703
MalI	GATC	3 cut(s)	153, 179, 345
MboI	GATC	3 cut(s)	151, 177, 343
MboII	GAAGA	8 cut(s)	19, 97, 116, 407, 517, 636, 638, 683
MlsI	TGGCCA	1 cut(s)	365
MluCI	AATT	6 cut(s)	78, 95, 339, 509, 676, 691
MluNI	TGGCCA	1 cut(s)	365
MlyI	GAGTC	1 cut(s)	109
MmeI	TCCRAC	2 cut(s)	397, 454
MnlI	CCTC	6 cut(s)	166, 237, 476, 609, 663, 678
Mox20I	TGGCCA	1 cut(s)	365
MscI	TGGCCA	1 cut(s)	365
MseI	TTAA	3 cut(s)	351, 369, 695
MslI	CAYNNNNRTG	2 cut(s)	496, 587
Msp20I	TGGCCA	1 cut(s)	365
Mva1269I	GAATGC	1 cut(s)	298
MwoI	GCNNNNNNNGC	2 cut(s)	279, 566
NdeII	GATC	3 cut(s)	151, 177, 343
NlaIII	CATG	1 cut(s)	326
NlaIV	GGNNCC	1 cut(s)	724
NmuCI	GTSAC	1 cut(s)	208
PaqCI	CACCTGC	1 cut(s)	75
PctI	GAATGC	1 cut(s)	298
PflMI	CCANNNNNTGG	1 cut(s)	539
PkrI	GCNGC	3 cut(s)	24, 562, 730
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
PspN4I	GGNNCC	1 cut(s)	724
PspPI	GGNCC	1 cut(s)	485
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
RseI	CAYNNNNRTG	2 cut(s)	496, 587
SaqAI	TTAA	3 cut(s)	351, 369, 695
SatI	GCNGC	3 cut(s)	23, 561, 729
Sau3AI	GATC	3 cut(s)	151, 177, 343
Sau96I	GGNCC	1 cut(s)	485
SchI	GAGTC	1 cut(s)	109
SetI	ASST	9 cut(s)	60, 69, 76, 217, 248, 459, 478, 562, 601
SfaNI	GCATC	1 cut(s)	740
SmiMI	CAYNNNNRTG	2 cut(s)	496, 587
SmlI	CTYRAG	2 cut(s)	527, 564
SmoI	CTYRAG	2 cut(s)	527, 564
Sse9I	AATT	6 cut(s)	78, 95, 339, 509, 676, 691
SsiI	CCGC	4 cut(s)	22, 288, 650, 726
SspI	AATATT	1 cut(s)	552
StyI	CCWWGG	1 cut(s)	476
TaaI	ACNGT	2 cut(s)	262, 709
TaiI	ACGT	2 cut(s)	76, 459
TaqI	TCGA	2 cut(s)	161, 267
TasI	AATT	6 cut(s)	78, 95, 339, 509, 676, 691
TauI	GCSGC	1 cut(s)	25
Tru1I	TTAA	3 cut(s)	351, 369, 695
Tru9I	TTAA	3 cut(s)	351, 369, 695
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	2 cut(s)	560, 728
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	2 cut(s)	204, 400
Van91I	CCANNNNNTGG	1 cut(s)	539
XagI	CCTNNNNNAGG	1 cut(s)	480
XapI	RAATTY	3 cut(s)	78, 95, 509
XcmI	CCANNNNNNNNNTGG	1 cut(s)	495
XmiI	GTMKAC	2 cut(s)	609, 711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.