MD17G1227900.v1.1

Trimethylguanosine synthase-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
27564397 .. 27564982
586 bp
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UTR
Exon/CDS
Intron
MD17G1227900.v1.1.491

Sequence Viewer

Length: 159 bp
ATGTACTTACCGCGGAATGTAGACTTACACCAAGTGGAAGAACTCTGCTGGTTGTCTTCTCCTCCTCTAGACGTTGAGATTGAAGAAAATTATGTGCAGAGCTCTCTAAAGGCTATAACAGTCTACTTCAGTGGTGCATCATCCACTCAATGTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

53

Amino Acids

5.9

Weight (kDa)

4.25

Isoelectric Point (pI)

70.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 21, 123
AccII CGCG 1 cut(s) 13
AciI CCGC 2 cut(s) 11, 13
AcuI CTGAAG 1 cut(s) 112
AdeI CACNNNGTG 1 cut(s) 34
AfaI GTAC 1 cut(s) 5
AgsI TTSAA 1 cut(s) 83
AluBI AGCT 1 cut(s) 102
AluI AGCT 1 cut(s) 102
Alw21I GWGCWC 1 cut(s) 104
BanII GRGCYC 1 cut(s) 104
BbsI GAAGAC 1 cut(s) 48
Bbv12I GWGCWC 1 cut(s) 104
BfaI CTAG 1 cut(s) 68
BmsI GCATC 1 cut(s) 146
BpiI GAAGAC 1 cut(s) 48
BsaJI CCNNGG 1 cut(s) 11
BseDI CCNNGG 1 cut(s) 11
BseGI GGATG 1 cut(s) 140
BseRI GAGGAG 2 cut(s) 51, 54
BsgI GTGCAG 1 cut(s) 116
Bsh1236I CGCG 1 cut(s) 13
BsiHKAI GWGCWC 1 cut(s) 104
Bsp1286I GDGCHC 1 cut(s) 104
BspACI CCGC 2 cut(s) 11, 13
BspFNI CGCG 1 cut(s) 13
BssECI CCNNGG 1 cut(s) 11
Bst4CI ACNGT 1 cut(s) 121
BstDSI CCRYGG 1 cut(s) 11
BstF5I GGATG 1 cut(s) 140
BstFNI CGCG 1 cut(s) 13
BstUI CGCG 1 cut(s) 13
BstV2I GAAGAC 1 cut(s) 48
BtgI CCRYGG 1 cut(s) 11
BtsCI GGATG 1 cut(s) 140
BtsIMutI CAGTG 1 cut(s) 136
Cfr42I CCGCGG 1 cut(s) 14
Csp6I GTAC 1 cut(s) 4
CviJI RGCY 2 cut(s) 102, 113
CviKI_1 RGCY 2 cut(s) 102, 113
CviQI GTAC 1 cut(s) 4
DraIII CACNNNGTG 1 cut(s) 34
Ecl136II GAGCTC 1 cut(s) 102
Eco24I GRGCYC 1 cut(s) 104
Eco53kI GAGCTC 1 cut(s) 102
Eco57I CTGAAG 1 cut(s) 112
EcoICRI GAGCTC 1 cut(s) 102
EcoT38I GRGCYC 1 cut(s) 104
FaiI YATR 4 cut(s) 93, 116, 155, 157
FblI GTMKAC 2 cut(s) 21, 123
FokI GGATG 1 cut(s) 127
FriOI GRGCYC 1 cut(s) 104
FspBI CTAG 1 cut(s) 68
FspEI CC 8 cut(s) 20, 24, 34, 44, 75, 78, 95, 117
Hpy166II GTNNAC 2 cut(s) 22, 124
Hpy188III TCNNGA 1 cut(s) 68
Hpy8I GTNNAC 2 cut(s) 22, 124
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4IV ACGT 1 cut(s) 72
HpyCH4V TGCA 2 cut(s) 97, 137
HpySE526I ACGT 1 cut(s) 72
KspI CCGCGG 1 cut(s) 14
LpnPI CCDG 1 cut(s) 34
LweI GCATC 1 cut(s) 146
MaeI CTAG 1 cut(s) 68
MaeII ACGT 1 cut(s) 72
MboII GAAGA 3 cut(s) 48, 50, 95
MhlI GDGCHC 1 cut(s) 104
MluCI AATT 1 cut(s) 88
MnlI CCTC 2 cut(s) 72, 75
MspA1I CMGCKG 1 cut(s) 13
MvnI CGCG 1 cut(s) 13
Psp124BI GAGCTC 1 cut(s) 104
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SacI GAGCTC 1 cut(s) 104
SacII CCGCGG 1 cut(s) 14
SduI GDGCHC 1 cut(s) 104
SetI ASST 2 cut(s) 75, 104
SfaNI GCATC 1 cut(s) 146
Sfr303I CCGCGG 1 cut(s) 14
SgeI CNNG 4 cut(s) 24, 44, 61, 80
SgrBI CCGCGG 1 cut(s) 14
Sse9I AATT 1 cut(s) 88
SsiI CCGC 2 cut(s) 11, 13
SspMI CTAG 1 cut(s) 68
SstI GAGCTC 1 cut(s) 104
TaaI ACNGT 1 cut(s) 121
TaiI ACGT 1 cut(s) 75
TasI AATT 1 cut(s) 88
TatI WGTACW 1 cut(s) 3
TscAI CASTG 1 cut(s) 136
TspRI CASTG 1 cut(s) 136
XbaI TCTAGA 1 cut(s) 67
XmiI GTMKAC 2 cut(s) 21, 123
XspI CTAG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.