Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0007787

Physical Location & Seq

Genomic Coordinates Reverse (-)

21483538 .. 21486445

Gene Structure 2908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g23080.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGCAGAAGAAGCTTTCAAGGCGGCGAAGAGCCACTCGTCGTCCTAAGAAATGCAACAAGCTCTTACAGCTCCCACGTCAGATTTATAGGAGAAGGAAGTTACTTGAACAAGGGTTGAGTCCCCTTGTTGAGAAGTATTGGTTTCAGAGATATGATCTCTTCTCGAGATACGATGAGGGGATCAGAATGGATGAGCAGGGCTGGTACTCCGTCACGCCTGAACAGATTGCAATCGGACACGCCAAGAGATGCCAAAGAACAACTGTTATCGATTGCTTCGCGGGCGTTGGCGGCAATGCCATTCAGTTTGCTTCATTGCGTTGTCATGTTGTTGCCATTGAAATTGATCCCCTAAAGGTGGATATGGCCATTAACAATGCAAAAATATATGGAGTGGAAGATTACATTGATTTCGTTGTTGGAGACTTTTTTGAACTTGCACCATCGTTGAAGGGGGATGTAGTGTTCCTTTCACCACCTTGGGGAGGCCCATCGTACACAAGGGTAAAGAAATTTACACTTGACCTACTCAAGCCAAAAGATGGGTACGCAATATTTCAAGCTGCTCAAGCGATAACGCCCAACATCATTATGTACTTACCGCGGATTGTAGACTTACACCAAGTGGAAGAACTCTGCTGGTTGTCTTCTCCTCCTCTAGACGTTGAGATTGAAGAAAATTATGTGCAGAGCTCTCTAAAGGCTATAACAACCTACTTCAGTGGTGCATCATCCACTCAATGTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Methyltransf_15

Protein Analysis

250

Amino Acids

28.58

Weight (kDa)

9.05

Isoelectric Point (pI)

54.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30545 AT1G30545 AT1G30550 AT1G30550
fragaria_vesca	FvH4_6g28100 FvH4_6g28100
malus_domestica	MD17G1227900.v1.1 MD17G1228200.v1.1
prunus_persica	Prupe.3G105200_v2.0.a1 Prupe.3G105200_v2.0.a1 Prupe.3G105200_v2.0.a1 Prupe.3G105200_v2.0.a1
pyrus_communis	pycom17g23080
rosa_chinensis	RchiOBHm_Chr2g0132081
rosa_laevigata	RLG00000019224
rosa_multiflora	Rmu_sc0012889.1_g000001 Rmu_ssc0000143.1_g000004
rosa_roxburghii	Rroxscaffold_2G00112410 Rroxscaffold_2G00117510
rosa_rugosa	Rorug02G0301900
rosa_samantha	Rh2AG355000 Rh2BG361400 Rh2DG377800
rosa_wichuraiana	Rw2G028820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	542
AccI	GTMKAC	1 cut(s)	612
AccII	CGCG	2 cut(s)	281, 604
AciI	CCGC	5 cut(s)	22, 281, 291, 602, 604
AclWI	GGATC	2 cut(s)	188, 341
AcoI	YGGCCR	1 cut(s)	366
AcsI	RAATTY	1 cut(s)	512
AcuI	CTGAAG	1 cut(s)	703
AdeI	CACNNNGTG	1 cut(s)	625
AfaI	GTAC	4 cut(s)	206, 497, 548, 596
AfiI	CCNNNNNNNGG	4 cut(s)	358, 482, 485, 542
AgsI	TTSAA	7 cut(s)	18, 107, 341, 434, 451, 560, 674
AjiI	CACGTC	1 cut(s)	77
AloI	GAACNNNNNNTCC	2 cut(s)	449, 481
AluBI	AGCT	5 cut(s)	13, 61, 70, 563, 693
AluI	AGCT	5 cut(s)	13, 61, 70, 563, 693
Alw21I	GWGCWC	1 cut(s)	695
Alw26I	GTCTC	1 cut(s)	417
AlwI	GGATC	2 cut(s)	188, 341
Ama87I	CYCGRG	1 cut(s)	163
AoxI	GGCC	2 cut(s)	366, 487
ApeKI	GCWGC	1 cut(s)	563
ApoI	RAATTY	1 cut(s)	512
AspS9I	GGNCC	1 cut(s)	488
AsuHPI	GGTGA	1 cut(s)	465
AvaI	CYCGRG	1 cut(s)	163
BalI	TGGCCA	1 cut(s)	368
BanII	GRGCYC	1 cut(s)	695
BbsI	GAAGAC	1 cut(s)	639
Bbv12I	GWGCWC	1 cut(s)	695
BbvI	GCAGC	1 cut(s)	550
BccI	CCATC	3 cut(s)	451, 499, 536
BcoDI	GTCTC	1 cut(s)	417
BfaI	CTAG	1 cut(s)	659
BisI	GCNGC	3 cut(s)	23, 292, 564
BlsI	GCNGC	3 cut(s)	24, 293, 565
BmeT110I	CYCGRG	1 cut(s)	163
BmgBI	CACGTC	1 cut(s)	77
BmgT120I	GGNCC	1 cut(s)	488
BmsI	GCATC	2 cut(s)	239, 737
BpiI	GAAGAC	1 cut(s)	639
BpuEI	CTTGAG	2 cut(s)	515, 552
Bsa29I	ATCGAT	1 cut(s)	270
BsaBI	GATNNNNATC	1 cut(s)	230
BsaJI	CCNNGG	2 cut(s)	479, 602
Bsc4I	CCNNNNNNNGG	4 cut(s)	358, 482, 485, 542
Bse3DI	GCAATG	2 cut(s)	301, 314
Bse8I	GATNNNNATC	1 cut(s)	230
BseCI	ATCGAT	1 cut(s)	270
BseDI	CCNNGG	2 cut(s)	479, 602
BseGI	GGATG	3 cut(s)	196, 463, 731
BseJI	GATNNNNATC	1 cut(s)	230
BseLI	CCNNNNNNNGG	4 cut(s)	358, 482, 485, 542
BseMI	GCAATG	2 cut(s)	301, 314
BseRI	GAGGAG	2 cut(s)	642, 645
BseXI	GCAGC	1 cut(s)	550
BsgI	GTGCAG	1 cut(s)	707
Bsh1236I	CGCG	2 cut(s)	281, 604
BshFI	GGCC	2 cut(s)	368, 489
BshVI	ATCGAT	1 cut(s)	270
BsiHKAI	GWGCWC	1 cut(s)	695
BsiHKCI	CYCGRG	1 cut(s)	163
BslFI	GGGAC	1 cut(s)	105
BslI	CCNNNNNNNGG	4 cut(s)	358, 482, 485, 542
BsmAI	GTCTC	1 cut(s)	417
BsmFI	GGGAC	1 cut(s)	105
BsnI	GGCC	2 cut(s)	368, 489
BsoBI	CYCGRG	1 cut(s)	163
Bsp1286I	GDGCHC	1 cut(s)	695
Bsp143I	GATC	3 cut(s)	154, 180, 346
BspACI	CCGC	5 cut(s)	22, 281, 291, 602, 604
BspANI	GGCC	2 cut(s)	368, 489
BspDI	ATCGAT	1 cut(s)	270
BspFNI	CGCG	2 cut(s)	281, 604
BspPI	GGATC	2 cut(s)	188, 341
BspQI	GCTCTTC	1 cut(s)	22
BsrDI	GCAATG	2 cut(s)	301, 314
BssECI	CCNNGG	2 cut(s)	479, 602
BssMI	GATC	3 cut(s)	154, 180, 346
BssT1I	CCWWGG	1 cut(s)	479
Bst4CI	ACNGT	1 cut(s)	265
Bst6I	CTCTTC	2 cut(s)	22, 164
BstC8I	GCNNGC	1 cut(s)	283
BstDEI	CTNAG	1 cut(s)	45
BstDSI	CCRYGG	1 cut(s)	602
BstENI	CCTNNNNNAGG	1 cut(s)	483
BstF5I	GGATG	3 cut(s)	196, 463, 731
BstFNI	CGCG	2 cut(s)	281, 604
BstKTI	GATC	3 cut(s)	157, 183, 349
BstMAI	GTCTC	1 cut(s)	417
BstMBI	GATC	3 cut(s)	154, 180, 346
BstMWI	GCNNNNNNNGC	6 cut(s)	10, 19, 67, 282, 291, 569
BstUI	CGCG	2 cut(s)	281, 604
BstV1I	GCAGC	1 cut(s)	550
BstV2I	GAAGAC	1 cut(s)	639
Bsu15I	ATCGAT	1 cut(s)	270
BsuRI	GGCC	2 cut(s)	368, 489
BsuTUI	ATCGAT	1 cut(s)	270
BtgI	CCRYGG	1 cut(s)	602
BtrI	CACGTC	1 cut(s)	77
BtsCI	GGATG	3 cut(s)	196, 463, 731
BtsIMutI	CAGTG	1 cut(s)	727
Cac8I	GCNNGC	1 cut(s)	283
Cfr13I	GGNCC	1 cut(s)	488
Cfr42I	CCGCGG	1 cut(s)	605
ClaI	ATCGAT	1 cut(s)	270
Csp6I	GTAC	4 cut(s)	205, 496, 547, 595
CviAII	CATG	1 cut(s)	326
CviQI	GTAC	4 cut(s)	205, 496, 547, 595
DdeI	CTNAG	1 cut(s)	45
DpnI	GATC	3 cut(s)	156, 182, 348
DpnII	GATC	3 cut(s)	154, 180, 346
DraIII	CACNNNGTG	1 cut(s)	625
EaeI	YGGCCR	1 cut(s)	366
Eam1104I	CTCTTC	2 cut(s)	22, 164
EarI	CTCTTC	2 cut(s)	22, 164
Ecl136II	GAGCTC	1 cut(s)	693
Eco130I	CCWWGG	1 cut(s)	479
Eco24I	GRGCYC	1 cut(s)	695
Eco53kI	GAGCTC	1 cut(s)	693
Eco57I	CTGAAG	1 cut(s)	703
Eco88I	CYCGRG	1 cut(s)	163
EcoICRI	GAGCTC	1 cut(s)	693
EcoNI	CCTNNNNNAGG	1 cut(s)	483
EcoT14I	CCWWGG	1 cut(s)	479
EcoT38I	GRGCYC	1 cut(s)	695
ErhI	CCWWGG	1 cut(s)	479
FaeI	CATG	1 cut(s)	329
FaqI	GGGAC	1 cut(s)	105
FatI	CATG	1 cut(s)	325
FauI	CCCGC	1 cut(s)	274
FblI	GTMKAC	1 cut(s)	612
Fnu4HI	GCNGC	3 cut(s)	23, 292, 564
FokI	GGATG	3 cut(s)	203, 470, 718
FriOI	GRGCYC	1 cut(s)	695
Fsp4HI	GCNGC	3 cut(s)	23, 292, 564
FspBI	CTAG	1 cut(s)	659
GluI	GCNGC	3 cut(s)	23, 292, 564
HaeIII	GGCC	2 cut(s)	368, 489
Hin1II	CATG	1 cut(s)	329
HindIII	AAGCTT	1 cut(s)	11
HinfI	GANTC	1 cut(s)	118
HphI	GGTGA	1 cut(s)	465
Hpy166II	GTNNAC	2 cut(s)	498, 613
Hpy188I	TCNGA	4 cut(s)	81, 147, 185, 236
Hpy188III	TCNNGA	3 cut(s)	163, 165, 659
Hpy8I	GTNNAC	2 cut(s)	498, 613
Hpy99I	CGWCG	1 cut(s)	42
HpyAV	CCTTC	2 cut(s)	87, 445
HpyCH4III	ACNGT	1 cut(s)	265
HpyCH4IV	ACGT	2 cut(s)	76, 663
HpyCH4V	TGCA	7 cut(s)	4, 54, 230, 380, 440, 688, 728
HpyF10VI	GCNNNNNNNGC	6 cut(s)	10, 19, 67, 282, 291, 569
HpyF3I	CTNAG	1 cut(s)	45
HpySE526I	ACGT	2 cut(s)	76, 663
Hsp92II	CATG	1 cut(s)	329
KspI	CCGCGG	1 cut(s)	605
Kzo9I	GATC	3 cut(s)	154, 180, 346
LguI	GCTCTTC	1 cut(s)	22
LmnI	GCTCC	1 cut(s)	75
LpnPI	CCDG	4 cut(s)	182, 187, 231, 625
Lsp1109I	GCAGC	1 cut(s)	550
LweI	GCATC	2 cut(s)	239, 737
MaeI	CTAG	1 cut(s)	659
MaeII	ACGT	2 cut(s)	76, 663
MaeIII	GTNAC	2 cut(s)	99, 211
MalI	GATC	3 cut(s)	156, 182, 348
MboI	GATC	3 cut(s)	154, 180, 346
MboII	GAAGA	7 cut(s)	19, 39, 151, 410, 639, 641, 686
MhlI	GDGCHC	1 cut(s)	695
MlsI	TGGCCA	1 cut(s)	368
MluCI	AATT	3 cut(s)	342, 512, 679
MluNI	TGGCCA	1 cut(s)	368
MlyI	GAGTC	1 cut(s)	127
MmeI	TCCRAC	1 cut(s)	400
MnlI	CCTC	4 cut(s)	169, 479, 663, 666
Mox20I	TGGCCA	1 cut(s)	368
MscI	TGGCCA	1 cut(s)	368
MseI	TTAA	1 cut(s)	372
MslI	CAYNNNNRTG	1 cut(s)	590
Msp20I	TGGCCA	1 cut(s)	368
MspA1I	CMGCKG	1 cut(s)	604
MvnI	CGCG	2 cut(s)	281, 604
MwoI	GCNNNNNNNGC	6 cut(s)	10, 19, 67, 282, 291, 569
NdeII	GATC	3 cut(s)	154, 180, 346
NlaIII	CATG	1 cut(s)	329
NmuCI	GTSAC	1 cut(s)	211
PaeR7I	CTCGAG	1 cut(s)	163
PciSI	GCTCTTC	1 cut(s)	22
PflMI	CCANNNNNTGG	1 cut(s)	542
PkrI	GCNGC	3 cut(s)	24, 293, 565
PleI	GAGTC	1 cut(s)	126
PpsI	GAGTC	1 cut(s)	126
Psp124BI	GAGCTC	1 cut(s)	695
PspPI	GGNCC	1 cut(s)	488
RsaI	GTAC	4 cut(s)	206, 497, 548, 596
RsaNI	GTAC	4 cut(s)	205, 496, 547, 595
RseI	CAYNNNNRTG	1 cut(s)	590
SacI	GAGCTC	1 cut(s)	695
SacII	CCGCGG	1 cut(s)	605
SapI	GCTCTTC	1 cut(s)	22
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	3 cut(s)	23, 292, 564
Sau3AI	GATC	3 cut(s)	154, 180, 346
Sau96I	GGNCC	1 cut(s)	488
SchI	GAGTC	1 cut(s)	127
SduI	GDGCHC	1 cut(s)	695
SfaNI	GCATC	2 cut(s)	239, 737
Sfr274I	CTCGAG	1 cut(s)	163
Sfr303I	CCGCGG	1 cut(s)	605
SgrBI	CCGCGG	1 cut(s)	605
SlaI	CTCGAG	1 cut(s)	163
SmiMI	CAYNNNNRTG	1 cut(s)	590
SmlI	CTYRAG	3 cut(s)	163, 530, 567
SmoI	CTYRAG	3 cut(s)	163, 530, 567
Sse9I	AATT	3 cut(s)	342, 512, 679
SsiI	CCGC	5 cut(s)	22, 281, 291, 602, 604
SspI	AATATT	1 cut(s)	555
SspMI	CTAG	1 cut(s)	659
SstI	GAGCTC	1 cut(s)	695
StyI	CCWWGG	1 cut(s)	479
TaaI	ACNGT	1 cut(s)	265
TaiI	ACGT	2 cut(s)	79, 666
TaqI	TCGA	2 cut(s)	164, 270
TasI	AATT	3 cut(s)	342, 512, 679
TatI	WGTACW	1 cut(s)	594
TauI	GCSGC	2 cut(s)	25, 294
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TscAI	CASTG	1 cut(s)	727
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	1 cut(s)	563
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	1 cut(s)	303
TspGWI	ACGGA	1 cut(s)	199
TspRI	CASTG	1 cut(s)	727
Van91I	CCANNNNNTGG	1 cut(s)	542
XagI	CCTNNNNNAGG	1 cut(s)	483
XapI	RAATTY	1 cut(s)	512
XbaI	TCTAGA	1 cut(s)	658
XhoI	CTCGAG	1 cut(s)	163
XmiI	GTMKAC	1 cut(s)	612
XspI	CTAG	1 cut(s)	659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.