AT1G31050

helix loop helix domain

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
11075398 .. 11079289
3892 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G31050.5

Sequence Viewer

Length: 1305 bp
ATGTTAAGGGAAGAATGTACTCCAAGTTCATCATGGTGGGAAGATGTTCAACATCATCATAATGATCATGCAAACTCGATTAGTTCGACGTCTTTCTACCATAAGAGTAGTAATAATAACTCACACGCCAACGCTAGCTGTGAAGAAGACAATCTCTCCGTCTCTACCGTACGCGCTTCGAATCGTTTGGACCTAACCGCTGAATCCTCCAATCATCACTCTCTCTCGGCTTCGAATCAGCCTGCCTCCTCCTCCGATGAGTTGCTTCGCGACCATGTAGTATCTTCTCATAATCATCTATGGAGTCTTGCCTTCTTGCCTGGTAGAAGCTTAGGAGATCAAATGATGGATCATCATCATCACATAGCATCAAGAAATTCATCAACAACATCAGAATTACCATCATTCGAGCCAGCGTGCCATAACGGTAATGGTAACGGTTGGATCTATGACCCAAATCAAGTTAGGTACGATCAAAGTAGTGACCAACGGCTGTCAAAGTTGACGGATCTTGTAGGCAAGCACTGGTCAATTGCACCACCGAATAATCCCGACATGAACCATAACCTTCATCATCACTTCGATCATGATCATTCTCAAAACGACGACATTTCTATGTACAGACAAGCCTTGGAGGTGAAAAATGAGGAAGATCTTTGTTACAATAATGGCTCAAGTGGTGGTGGTTCCTTGTTCCATGATCCTATAGAAAGTTCTAGAAGTTTCCTTGATATAAGGTTAAGTAGGCCATTAACGGATATTAATCCGTCATTTAAGCCATGCTTTAAGGCCTTAAACGTATCCGAGTTTAACAAGAAAGAACATCAAACGGCATCTCTGGCAGCAGTGAGACTGGGAACAACAAACGCTGGAAAAAAGAAGAGATGTGAAGAAATTTCCGATGAGGTTTCAAAGAAGGCCAAGTGCAGTGAGGGCTCTACACTTTCGCCAGAGAAGGAACTACCCAAAGCCAAACTTCGAGACAAGATCACGACTCTACAGCAAATTGTGTCTCCCTTTGGAAAGACTGATACTGCTTCTGTGCTTCAAGAGGCCATCACTTACATAAATTTTTATCAAGAGCAAGTTAAGCTGCTAAGCACTCCTTATATGAAGAATTCATCAATGAAGGATCCATGGGGGGGATGGGACAGAGAAGATCACAACAAAAGGGGACCGAAGCATCTTGATCTAAGGAGTAGAGGGCTTTGTTTGGTTCCTATTTCATATACCCCAATCGCATACCGCGATAACAGTGCAACTGACTACTGGAATCCCACGTATAGAGGTTCTTTGTATCGTTAG

Protein Analysis

434

Amino Acids

48.98

Weight (kDa)

6.37

Isoelectric Point (pI)

52.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 92
AccII CGCG 3 cut(s) 174, 270, 1248
AciI CCGC 2 cut(s) 198, 1246
AclWI GGATC 6 cut(s) 357, 452, 516, 695, 1127, 1140
AcsI RAATTY 4 cut(s) 376, 894, 1069, 1117
AcyI GRCGYC 1 cut(s) 89
AfaI GTAC 4 cut(s) 19, 171, 470, 620
AfiI CCNNNNNNNGG 1 cut(s) 1142
AgsI TTSAA 3 cut(s) 50, 912, 1049
AjnI CCWGG 1 cut(s) 319
AluBI AGCT 3 cut(s) 138, 330, 1093
AluI AGCT 3 cut(s) 138, 330, 1093
Alw26I GTCTC 4 cut(s) 166, 844, 975, 1017
AlwI GGATC 6 cut(s) 357, 452, 516, 695, 1127, 1140
AoxI GGCC 4 cut(s) 746, 789, 918, 1053
ApeKI GCWGC 2 cut(s) 842, 1093
ApoI RAATTY 4 cut(s) 376, 894, 1069, 1117
AseI ATTAAT 1 cut(s) 762
Asp700I GAANNNNTTC 1 cut(s) 45
AspLEI GCGC 1 cut(s) 176
AspS9I GGNCC 2 cut(s) 190, 1175
AsuHPI GGTGA 1 cut(s) 649
AsuII TTCGAA 2 cut(s) 179, 233
AsuNHI GCTAGC 1 cut(s) 134
AvaII GGWCC 2 cut(s) 190, 1175
BamHI GGATCC 1 cut(s) 1132
BanII GRGCYC 1 cut(s) 938
BbsI GAAGAC 1 cut(s) 153
BbvI GCAGC 2 cut(s) 854, 1080
BccI CCATC 4 cut(s) 340, 409, 1064, 1140
BceAI ACGGC 2 cut(s) 506, 846
BcgI CGANNNNNNTGC 2 cut(s) 1238, 1272
BciT130I CCWGG 1 cut(s) 321
BciVI GTATCC 1 cut(s) 811
BclI TGATCA 2 cut(s) 64, 589
BcoDI GTCTC 4 cut(s) 166, 844, 975, 1017
BfaI CTAG 2 cut(s) 135, 717
BfmI CTRYAG 2 cut(s) 705, 998
BfuI GTATCC 1 cut(s) 811
BglII AGATCT 1 cut(s) 652
BisI GCNGC 2 cut(s) 843, 1094
BlpI GCTNAGC 1 cut(s) 1097
BlsI GCNGC 2 cut(s) 844, 1095
Bme1390I CCNGG 1 cut(s) 321
Bme18I GGWCC 2 cut(s) 190, 1175
BmgT120I GGNCC 2 cut(s) 190, 1175
BmiI GGNNCC 4 cut(s) 688, 1134, 1176, 1218
BmrFI CCNGG 1 cut(s) 321
BmrI ACTGGG 1 cut(s) 863
BmsI GCATC 3 cut(s) 377, 842, 1192
BmtI GCTAGC 1 cut(s) 138
BmuI ACTGGG 1 cut(s) 863
BpiI GAAGAC 1 cut(s) 153
Bpu10I CCTNAGC 1 cut(s) 331
Bpu1102I GCTNAGC 1 cut(s) 1097
Bpu14I TTCGAA 2 cut(s) 179, 233
BpuEI CTTGAG 1 cut(s) 658
BsaAI YACGTR 1 cut(s) 1281
BsaBI GATNNNNATC 3 cut(s) 354, 588, 762
BsaHI GRCGYC 1 cut(s) 89
BsaJI CCNNGG 2 cut(s) 630, 1136
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
Bsc4I CCNNNNNNNGG 1 cut(s) 1142
Bse1I ACTGG 3 cut(s) 530, 858, 1274
Bse8I GATNNNNATC 3 cut(s) 354, 588, 762
BseBI CCWGG 1 cut(s) 321
BseDI CCNNGG 2 cut(s) 630, 1136
BseGI GGATG 1 cut(s) 1151
BseJI GATNNNNATC 3 cut(s) 354, 588, 762
BseLI CCNNNNNNNGG 1 cut(s) 1142
BseNI ACTGG 3 cut(s) 530, 858, 1274
BseRI GAGGAG 2 cut(s) 238, 241
BseXI GCAGC 2 cut(s) 854, 1080
BsgI GTGCAG 1 cut(s) 946
Bsh1236I CGCG 3 cut(s) 174, 270, 1248
BshFI GGCC 4 cut(s) 748, 791, 920, 1055
BsiWI CGTACG 1 cut(s) 169
BslFI GGGAC 2 cut(s) 1163, 1188
BslI CCNNNNNNNGG 1 cut(s) 1142
BsmAI GTCTC 4 cut(s) 166, 844, 975, 1017
BsmBI CGTCTC 1 cut(s) 166
BsmFI GGGAC 2 cut(s) 1163, 1188
BsnI GGCC 4 cut(s) 748, 791, 920, 1055
Bsp119I TTCGAA 2 cut(s) 179, 233
Bsp1286I GDGCHC 1 cut(s) 938
Bsp1407I TGTACA 1 cut(s) 618
Bsp1720I GCTNAGC 1 cut(s) 1097
Bsp19I CCATGG 1 cut(s) 1136
Bsp68I TCGCGA 1 cut(s) 270
BspACI CCGC 2 cut(s) 198, 1246
BspANI GGCC 4 cut(s) 748, 791, 920, 1055
BspFNI CGCG 3 cut(s) 174, 270, 1248
BspHI TCATGA 1 cut(s) 586
BspLI GGNNCC 4 cut(s) 688, 1134, 1176, 1218
BspOI GCTAGC 1 cut(s) 138
BspPI GGATC 6 cut(s) 357, 452, 516, 695, 1127, 1140
BspT104I TTCGAA 2 cut(s) 179, 233
BsrGI TGTACA 1 cut(s) 618
BsrI ACTGG 3 cut(s) 530, 858, 1274
BssECI CCNNGG 2 cut(s) 630, 1136
BssNI GRCGYC 1 cut(s) 89
BssT1I CCWWGG 2 cut(s) 630, 1136
Bst2UI CCWGG 1 cut(s) 321
Bst4CI ACNGT 4 cut(s) 169, 428, 440, 1256
Bst6I CTCTTC 1 cut(s) 875
BstACI GRCGYC 1 cut(s) 89
BstAUI TGTACA 1 cut(s) 618
BstBAI YACGTR 1 cut(s) 1281
BstBI TTCGAA 2 cut(s) 179, 233
BstC8I GCNNGC 5 cut(s) 136, 243, 414, 418, 521
BstDEI CTNAG 3 cut(s) 331, 1097, 1193
BstDSI CCRYGG 1 cut(s) 1136
BstF5I GGATG 1 cut(s) 1151
BstFNI CGCG 3 cut(s) 174, 270, 1248
BstHHI GCGC 1 cut(s) 176
BstMAI GTCTC 4 cut(s) 166, 844, 975, 1017
BstMWI GCNNNNNNNGC 3 cut(s) 839, 933, 1090
BstNI CCWGG 1 cut(s) 321
BstSCI CCNGG 1 cut(s) 319
BstSFI CTRYAG 2 cut(s) 705, 998
BstUI CGCG 3 cut(s) 174, 270, 1248
BstV1I GCAGC 2 cut(s) 854, 1080
BstV2I GAAGAC 1 cut(s) 153
BstX2I RGATCY 4 cut(s) 444, 508, 652, 1132
BstYI RGATCY 4 cut(s) 444, 508, 652, 1132
BsuI GTATCC 1 cut(s) 811
BsuRI GGCC 4 cut(s) 748, 791, 920, 1055
BtgI CCRYGG 1 cut(s) 1136
BtsCI GGATG 1 cut(s) 1151
BtsI GCAGTG 2 cut(s) 852, 934
BtsIMutI CAGTG 4 cut(s) 523, 852, 934, 1261
BtuMI TCGCGA 1 cut(s) 270
Cac8I GCNNGC 5 cut(s) 136, 243, 414, 418, 521
CciI TCATGA 1 cut(s) 586
CfoI GCGC 1 cut(s) 176
Cfr13I GGNCC 2 cut(s) 190, 1175
Csp6I GTAC 4 cut(s) 18, 170, 469, 619
CviAII CATG 8 cut(s) 33, 68, 275, 556, 587, 698, 780, 1137
CviQI GTAC 4 cut(s) 18, 170, 469, 619
DdeI CTNAG 3 cut(s) 331, 1097, 1193
Eam1104I CTCTTC 1 cut(s) 875
EarI CTCTTC 1 cut(s) 875
Eco130I CCWWGG 2 cut(s) 630, 1136
Eco147I AGGCCT 1 cut(s) 791
Eco24I GRGCYC 1 cut(s) 938
Eco47I GGWCC 2 cut(s) 190, 1175
EcoRI GAATTC 1 cut(s) 1117
EcoRII CCWGG 1 cut(s) 319
EcoT14I CCWWGG 2 cut(s) 630, 1136
EcoT38I GRGCYC 1 cut(s) 938
ErhI CCWWGG 2 cut(s) 630, 1136
Esp3I CGTCTC 1 cut(s) 166
FaeI CATG 8 cut(s) 36, 71, 278, 559, 590, 701, 783, 1140
FalI AAGNNNNNCTT 6 cut(s) 767, 799, 960, 992, 1090, 1122
FaqI GGGAC 2 cut(s) 1163, 1188
FatI CATG 8 cut(s) 32, 67, 274, 555, 586, 697, 779, 1136
FbaI TGATCA 2 cut(s) 64, 589
Fnu4HI GCNGC 2 cut(s) 843, 1094
FokI GGATG 1 cut(s) 1158
FriOI GRGCYC 1 cut(s) 938
Fsp4HI GCNGC 2 cut(s) 843, 1094
FspBI CTAG 2 cut(s) 135, 717
GlaI GCGC 1 cut(s) 175
GluI GCNGC 2 cut(s) 843, 1094
HaeIII GGCC 4 cut(s) 748, 791, 920, 1055
HhaI GCGC 1 cut(s) 176
Hin1I GRCGYC 1 cut(s) 89
Hin1II CATG 8 cut(s) 36, 71, 278, 559, 590, 701, 783, 1140
Hin6I GCGC 1 cut(s) 174
HinP1I GCGC 1 cut(s) 174
HincII GTYRAC 1 cut(s) 504
HindII GTYRAC 1 cut(s) 504
HindIII AAGCTT 1 cut(s) 328
HinfI GANTC 6 cut(s) 181, 203, 235, 304, 994, 1273
HphI GGTGA 1 cut(s) 649
Hpy166II GTNNAC 1 cut(s) 504
Hpy188I TCNGA 4 cut(s) 256, 394, 805, 901
Hpy8I GTNNAC 1 cut(s) 504
Hpy99I CGWCG 2 cut(s) 91, 608
HpyAV CCTTC 5 cut(s) 322, 578, 910, 949, 1123
HpyCH4III ACNGT 4 cut(s) 169, 428, 440, 1256
HpyCH4IV ACGT 3 cut(s) 89, 798, 1280
HpyCH4V TGCA 4 cut(s) 71, 536, 927, 1259
HpyF10VI GCNNNNNNNGC 3 cut(s) 839, 933, 1090
HpyF3I CTNAG 3 cut(s) 331, 1097, 1193
HpySE526I ACGT 3 cut(s) 89, 798, 1280
Hsp92I GRCGYC 1 cut(s) 89
Hsp92II CATG 8 cut(s) 36, 71, 278, 559, 590, 701, 783, 1140
HspAI GCGC 1 cut(s) 174
Ksp22I TGATCA 2 cut(s) 64, 589
Lsp1109I GCAGC 2 cut(s) 854, 1080
LweI GCATC 3 cut(s) 377, 842, 1192
MaeI CTAG 2 cut(s) 135, 717
MaeII ACGT 3 cut(s) 89, 798, 1280
MaeIII GTNAC 3 cut(s) 434, 482, 659
MfeI CAATTG 1 cut(s) 531
MflI RGATCY 4 cut(s) 444, 508, 652, 1132
MhlI GDGCHC 1 cut(s) 938
MluCI AATT 7 cut(s) 376, 395, 531, 894, 1005, 1069, 1117
MlyI GAGTC 2 cut(s) 313, 988
MmeI TCCRAC 1 cut(s) 422
MroXI GAANNNNTTC 1 cut(s) 45
MseI TTAA 9 cut(s) 5, 740, 752, 762, 774, 786, 794, 810, 1089
MslI CAYNNNNRTG 3 cut(s) 34, 60, 614
MspA1I CMGCKG 1 cut(s) 200
MspR9I CCNGG 1 cut(s) 321
MunI CAATTG 1 cut(s) 531
MvaI CCWGG 1 cut(s) 321
MvnI CGCG 3 cut(s) 174, 270, 1248
MwoI GCNNNNNNNGC 3 cut(s) 839, 933, 1090
NcoI CCATGG 1 cut(s) 1136
NheI GCTAGC 1 cut(s) 134
NlaIII CATG 8 cut(s) 36, 71, 278, 559, 590, 701, 783, 1140
NlaIV GGNNCC 4 cut(s) 688, 1134, 1176, 1218
NmeAIII GCCGAG 1 cut(s) 206
NmuCI GTSAC 1 cut(s) 482
NruI TCGCGA 1 cut(s) 270
NspV TTCGAA 2 cut(s) 179, 233
PagI TCATGA 1 cut(s) 586
PceI AGGCCT 1 cut(s) 791
PcsI WCGNNNNNNNCGW 2 cut(s) 83, 1245
PdmI GAANNNNTTC 1 cut(s) 45
PfeI GAWTC 4 cut(s) 181, 203, 235, 1273
Pfl23II CGTACG 1 cut(s) 169
PkrI GCNGC 2 cut(s) 844, 1095
PleI GAGTC 2 cut(s) 312, 988
PpsI GAGTC 2 cut(s) 312, 988
Ppu21I YACGTR 1 cut(s) 1281
PshBI ATTAAT 1 cut(s) 762
Psp6I CCWGG 1 cut(s) 319
PspGI CCWGG 1 cut(s) 319
PspLI CGTACG 1 cut(s) 169
PspN4I GGNNCC 4 cut(s) 688, 1134, 1176, 1218
PspPI GGNCC 2 cut(s) 190, 1175
PsrI GAACNNNNNNTAC 2 cut(s) 10, 42
PsuI RGATCY 4 cut(s) 444, 508, 652, 1132
RruI TCGCGA 1 cut(s) 270
RsaI GTAC 4 cut(s) 19, 171, 470, 620
RsaNI GTAC 4 cut(s) 18, 170, 469, 619
RseI CAYNNNNRTG 3 cut(s) 34, 60, 614
SaqAI TTAA 9 cut(s) 5, 740, 752, 762, 774, 786, 794, 810, 1089
SatI GCNGC 2 cut(s) 843, 1094
Sau96I GGNCC 2 cut(s) 190, 1175
SchI GAGTC 2 cut(s) 313, 988
ScrFI CCNGG 1 cut(s) 321
SduI GDGCHC 1 cut(s) 938
SfaNI GCATC 3 cut(s) 377, 842, 1192
SfcI CTRYAG 2 cut(s) 705, 998
SfuI TTCGAA 2 cut(s) 179, 233
SinI GGWCC 2 cut(s) 190, 1175
SmiMI CAYNNNNRTG 3 cut(s) 34, 60, 614
SmlI CTYRAG 1 cut(s) 673
SmoI CTYRAG 1 cut(s) 673
Sse9I AATT 7 cut(s) 376, 395, 531, 894, 1005, 1069, 1117
SseBI AGGCCT 1 cut(s) 791
SsiI CCGC 2 cut(s) 198, 1246
SspMI CTAG 2 cut(s) 135, 717
StuI AGGCCT 1 cut(s) 791
StyD4I CCNGG 1 cut(s) 319
StyI CCWWGG 2 cut(s) 630, 1136
TaaI ACNGT 4 cut(s) 169, 428, 440, 1256
TaiI ACGT 3 cut(s) 92, 801, 1283
TaqI TCGA 7 cut(s) 77, 86, 179, 233, 408, 582, 979
TaqII GACCGA 1 cut(s) 1192
TasI AATT 7 cut(s) 376, 395, 531, 894, 1005, 1069, 1117
TatI WGTACW 2 cut(s) 17, 618
TfiI GAWTC 4 cut(s) 181, 203, 235, 1273
Tru1I TTAA 9 cut(s) 5, 740, 752, 762, 774, 786, 794, 810, 1089
Tru9I TTAA 9 cut(s) 5, 740, 752, 762, 774, 786, 794, 810, 1089
TscAI CASTG 4 cut(s) 530, 852, 934, 1261
TseFI GTSAC 1 cut(s) 482
TseI GCWGC 2 cut(s) 842, 1093
Tsp45I GTSAC 1 cut(s) 482
TspDTI ATGAA 8 cut(s) 18, 369, 560, 572, 1110, 1127, 1142, 1215
TspGWI ACGGA 4 cut(s) 148, 521, 756, 770
TspRI CASTG 4 cut(s) 530, 852, 934, 1261
VpaK11BI GGWCC 2 cut(s) 190, 1175
VspI ATTAAT 1 cut(s) 762
XapI RAATTY 4 cut(s) 376, 894, 1069, 1117
XbaI TCTAGA 1 cut(s) 716
XcmI CCANNNNNNNNNTGG 3 cut(s) 30, 428, 1143
XmnI GAANNNNTTC 1 cut(s) 45
XspI CTAG 2 cut(s) 135, 717
ZraI GACGTC 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.