Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0004404

Physical Location & Seq

Genomic Coordinates Forward (+)

753937 .. 756953

Gene Structure 3017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1012600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1617 bp

ATGGCCGAAGAATGCGGTGTTGCAATCTCTTCTTCCTCTACGCAGCTAACGCAACAAAACTGGTGGGATCTCGTCAGCTCTACCAACCCATGGCAGCAGCAGCAGCAGCAGCAGCAACTAAATCAGAAGTACTCCAACTCTTCTAATAATAATTGTGATGATGTTGATCAGGATGTTTCAATCTCCAGTACTTCCTTTACCAATGCCTCCAACCACTCAAGCCTCAGCGTCGACTCCTCTCGCAGACTGCTTGCTGATCAACGTTCTGCTTCTTCCAACGACGACCTGATTAATGGCGAACAGGTCTCTGATAATCATATTTGGAACCATGTCCTATTAAGCGTTAATGCAAACCATGATTTACGCAACAATGATCATGGTGTTGGAGAGAACTTCATAGATGCACTACCATCCAAGGGCTTGTCAACTCATCATGTTATGTACGATGAGCCTGCTTGTGACTACTTGAAGAAGTTGGACAACAATAGTACTTGGGAGTTCACAAACTCAGCCGCCTCCAATTTCAACAATTTTGAAAAGCAAATAAATGGAGGATTCATGGATAACAACATGAATATTAGTATTGAGAACGAAAGGTTAACCAAGTTGTCTAATCTAGTCAGCAGTTGGTCCATTGCACCCCCAGAACCACAACTAGTACTCAACAATTTTCCTCCTCATCAAGTAATGGATCATGATCATCACTACTCACAACCAAATCTCTGTCACTTAAAGCCGCAACCGTTTTTTAATGATTCCACCTCATCATGCAATCCTCAGATGGGAATTACAAATAGAAACTCGGCATCCAGTTTATTTTCGTGTTACCGCAGTCAAAATATGAAGGTAGACGATCAGAACCATGGACACCCTAATGGCATTGAATATCAGATTGGCCTCGACAACCCAATGGCTGCAGATCATCATAATAGCAAGTACTTCAATGGAAATGGATCAATCTTGCCGGATTCTTATTCTTCATGCACTAGTACTAATGCAGCCAGAAATTTTGCAGATGTTATATCTTTTACGAGTCGATTAGGAAATAAGCCCTTGAATGACCTTCATGCTCCTAAGCCTTGTTTCAAATCTTTCAACTCTTCTGATCATTCTAAGAAGCAAAACCTGCAAACTTCTTCGTCGGCAAGAATGAGTGGTGGAAGAGGACAGGGAATTGCAAATGAAGGAAAAAAGAAAAGAACGGACGACACATCATCAGAAACAGTCGTGAAAAAGCCTAAGCAAGAAACTTCTACAGTTTCATCTGCAAAGATGCAGGCACCAAAAGTCAAGCTTGGGGACAGGATCACGGCCCTTCAACAAATCGTGTCTCCATTTGGAAAGACTGATACGGCATCAGTACTATACGAAGCGATTCAGTACATTAAGTTCCTGCAAGAACAAGTGCACGTGCTATTGAATAGCCCTTATTTGAAGACAAATTCACCAAAGGATCCATGGGCGATGGAAAGAAAAGATCACAAGGGAGATACAAAGGTTGATCTCAAGAGCAAGGGCCTATGTTTGGTGCCTGTTTCATGTACGCCTCAAGTTTATCGTGAAAATACAGGATCAGACTATTGGACACCAACATATAGAGGAAGTTTGTATAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

539

Amino Acids

60.0

Weight (kDa)

6.37

Isoelectric Point (pI)

41.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31050 AT1G31050 AT1G31050 AT1G31050 AT1G31050 AT1G31050 AT1G31050 AT1G31050
fragaria_vesca	FvH4_4g36070 FvH4_4g36070 FvH4_4g36070 FvH4_4g36070 FvH4_4g36070 FvH4_4g36070 FvH4_4g36070 FvH4_4g36070 FvH4_4g36070
malus_domestica	MD13G1012600.v1.1 MD16G1009300.v1.1
prunus_persica	Prupe.1G341300_v2.0.a1 Prupe.1G341300_v2.0.a1 Prupe.1G341300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0445691
rosa_laevigata	RLG00000005716
rosa_roxburghii	Rroxscaffold_5G00386180
rosa_rugosa	Rorug04G0364700 Rorug04G0364800 Rorug04G0364900
rosa_samantha	Rh4AG425700 Rh4CG452800 Rh4DG434000
rosa_wichuraiana	Rw4G036470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1134
AccB1I	GGYRCC	2 cut(s)	1279, 1528
AccB7I	CCANNNNNTGG	1 cut(s)	90
AccI	GTMKAC	2 cut(s)	231, 849
AciI	CCGC	4 cut(s)	15, 513, 737, 829
AclI	AACGTT	1 cut(s)	262
AclWI	GGATC	7 cut(s)	75, 699, 961, 1313, 1448, 1461, 1579
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	1006, 1441
AcvI	CACGTG	1 cut(s)	1411
AfiI	CCNNNNNNNGG	4 cut(s)	90, 416, 782, 1525
AhlI	ACTAGT	2 cut(s)	655, 986
AjuI	GAANNNNNNNTTGG	2 cut(s)	876, 908
AluBI	AGCT	3 cut(s)	46, 78, 1294
AluI	AGCT	3 cut(s)	46, 78, 1294
Alw21I	GWGCWC	1 cut(s)	1410
Alw26I	GTCTC	2 cut(s)	310, 1335
Alw44I	GTGCAC	1 cut(s)	1406
AlwI	GGATC	7 cut(s)	75, 699, 961, 1313, 1448, 1461, 1579
AoxI	GGCC	4 cut(s)	3, 895, 1311, 1516
ApaLI	GTGCAC	1 cut(s)	1406
ApoI	RAATTY	2 cut(s)	1006, 1441
AseI	ATTAAT	1 cut(s)	291
Asp700I	GAANNNNTTC	1 cut(s)	1374
AspS9I	GGNCC	3 cut(s)	630, 1312, 1516
AsuHPI	GGTGA	1 cut(s)	1437
AvaII	GGWCC	1 cut(s)	630
BaeGI	GKGCMC	1 cut(s)	1410
BaeI	ACNNNNGTAYC	2 cut(s)	1482, 1515
BamHI	GGATCC	1 cut(s)	1453
BanI	GGYRCC	2 cut(s)	1279, 1528
BbrPI	CACGTG	1 cut(s)	1411
BbsI	GAAGAC	1 cut(s)	1442
Bbv12I	GWGCWC	1 cut(s)	1410
BbvCI	CCTCAGC	1 cut(s)	224
BccI	CCATC	3 cut(s)	418, 775, 1459
BceAI	ACGGC	2 cut(s)	1326, 1368
BcgI	CGANNNNNNTGC	2 cut(s)	434, 468
BclI	TGATCA	5 cut(s)	166, 256, 373, 697, 1105
BcoDI	GTCTC	2 cut(s)	310, 1335
BcuI	ACTAGT	2 cut(s)	655, 986
BfaI	CTAG	3 cut(s)	617, 656, 987
BfmI	CTRYAG	2 cut(s)	915, 1254
BfuAI	ACCTGC	1 cut(s)	1134
BmcAI	AGTACT	7 cut(s)	131, 190, 490, 660, 938, 991, 1362
Bme18I	GGWCC	1 cut(s)	630
BmgT120I	GGNCC	3 cut(s)	630, 1312, 1516
BmiI	GGNNCC	4 cut(s)	326, 1281, 1455, 1530
BmsI	GCATC	4 cut(s)	391, 815, 1263, 1364
BpiI	GAAGAC	1 cut(s)	1442
BpmI	CTGGAG	1 cut(s)	169
Bpu10I	CCTNAGC	3 cut(s)	224, 1074, 1239
BpuEI	CTTGAG	3 cut(s)	202, 1490, 1533
BsaAI	YACGTR	1 cut(s)	1411
BsaBI	GATNNNNATC	2 cut(s)	165, 696
BsaI	GGTCTC	1 cut(s)	310
BsaJI	CCNNGG	4 cut(s)	89, 414, 862, 1457
Bsc4I	CCNNNNNNNGG	4 cut(s)	90, 416, 782, 1525
Bse1I	ACTGG	3 cut(s)	65, 186, 810
Bse3DI	GCAATG	1 cut(s)	633
Bse8I	GATNNNNATC	2 cut(s)	165, 696
BseDI	CCNNGG	4 cut(s)	89, 414, 862, 1457
BseGI	GGATG	3 cut(s)	178, 410, 806
BseJI	GATNNNNATC	2 cut(s)	165, 696
BseLI	CCNNNNNNNGG	4 cut(s)	90, 416, 782, 1525
BseMI	GCAATG	1 cut(s)	633
BseMII	CTCAG	3 cut(s)	238, 522, 791
BseNI	ACTGG	3 cut(s)	65, 186, 810
BseRI	GAGGAG	2 cut(s)	226, 666
BseSI	GKGCMC	1 cut(s)	1410
BshFI	GGCC	4 cut(s)	5, 897, 1313, 1518
BshNI	GGYRCC	2 cut(s)	1279, 1528
BsiHKAI	GWGCWC	1 cut(s)	1410
BsiSI	CCGG	1 cut(s)	965
BslFI	GGGAC	1 cut(s)	1313
BslI	CCNNNNNNNGG	4 cut(s)	90, 416, 782, 1525
BsmAI	GTCTC	2 cut(s)	310, 1335
BsmFI	GGGAC	1 cut(s)	1313
BsmI	GAATGC	1 cut(s)	17
BsnI	GGCC	4 cut(s)	5, 897, 1313, 1518
Bso31I	GGTCTC	1 cut(s)	310
Bsp1286I	GDGCHC	1 cut(s)	1410
Bsp19I	CCATGG	3 cut(s)	89, 862, 1457
BspACI	CCGC	4 cut(s)	15, 513, 737, 829
BspANI	GGCC	4 cut(s)	5, 897, 1313, 1518
BspCNI	CTCAG	3 cut(s)	237, 521, 790
BspHI	TCATGA	1 cut(s)	694
BspLI	GGNNCC	4 cut(s)	326, 1281, 1455, 1530
BspMAI	CTGCAG	1 cut(s)	919
BspMI	ACCTGC	1 cut(s)	1134
BspPI	GGATC	7 cut(s)	75, 699, 961, 1313, 1448, 1461, 1579
BspT107I	GGYRCC	2 cut(s)	1279, 1528
BspTNI	GGTCTC	1 cut(s)	310
BsrDI	GCAATG	1 cut(s)	633
BsrI	ACTGG	3 cut(s)	65, 186, 810
BssECI	CCNNGG	4 cut(s)	89, 414, 862, 1457
BssT1I	CCWWGG	4 cut(s)	89, 414, 862, 1457
Bst4CI	ACNGT	3 cut(s)	744, 1225, 1258
Bst6I	CTCTTC	4 cut(s)	34, 145, 1105, 1156
BstAPI	GCANNNNNTGC	1 cut(s)	1126
BstBAI	YACGTR	1 cut(s)	1411
BstC8I	GCNNGC	3 cut(s)	252, 453, 1278
BstDEI	CTNAG	6 cut(s)	224, 508, 777, 1074, 1113, 1239
BstDSI	CCRYGG	3 cut(s)	89, 862, 1457
BstF5I	GGATG	3 cut(s)	178, 410, 806
BstMAI	GTCTC	2 cut(s)	310, 1335
BstMWI	GCNNNNNNNGC	7 cut(s)	49, 100, 103, 106, 109, 112, 1126
BstSFI	CTRYAG	2 cut(s)	915, 1254
BstSLI	GKGCMC	1 cut(s)	1410
BstV2I	GAAGAC	1 cut(s)	1442
BstX2I	RGATCY	2 cut(s)	67, 1453
BstYI	RGATCY	2 cut(s)	67, 1453
BsuRI	GGCC	4 cut(s)	5, 897, 1313, 1518
BtgI	CCRYGG	3 cut(s)	89, 862, 1457
BtgZI	GCGATG	1 cut(s)	1478
BtsCI	GGATG	3 cut(s)	178, 410, 806
BveI	ACCTGC	1 cut(s)	1134
Cac8I	GCNNGC	3 cut(s)	252, 453, 1278
CciI	TCATGA	1 cut(s)	694
Cfr13I	GGNCC	3 cut(s)	630, 1312, 1516
CseI	GACGC	1 cut(s)	217
CspCI	CAANNNNNGTGG	2 cut(s)	44, 79
DdeI	CTNAG	6 cut(s)	224, 508, 777, 1074, 1113, 1239
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	4 cut(s)	34, 145, 1105, 1156
EarI	CTCTTC	4 cut(s)	34, 145, 1105, 1156
Eco130I	CCWWGG	4 cut(s)	89, 414, 862, 1457
Eco31I	GGTCTC	1 cut(s)	310
Eco47I	GGWCC	1 cut(s)	630
Eco72I	CACGTG	1 cut(s)	1411
EcoO109I	RGGNCCY	1 cut(s)	1516
EcoT14I	CCWWGG	4 cut(s)	89, 414, 862, 1457
ErhI	CCWWGG	4 cut(s)	89, 414, 862, 1457
FalI	AAGNNNNNCTT	2 cut(s)	1278, 1310
FaqI	GGGAC	1 cut(s)	1313
FbaI	TGATCA	5 cut(s)	166, 256, 373, 697, 1105
FblI	GTMKAC	2 cut(s)	231, 849
FokI	GGATG	3 cut(s)	185, 397, 793
FspBI	CTAG	3 cut(s)	617, 656, 987
GsuI	CTGGAG	1 cut(s)	169
HaeIII	GGCC	4 cut(s)	5, 897, 1313, 1518
HapII	CCGG	1 cut(s)	965
HgaI	GACGC	1 cut(s)	217
HincII	GTYRAC	3 cut(s)	232, 426, 600
HindII	GTYRAC	3 cut(s)	232, 426, 600
HindIII	AAGCTT	1 cut(s)	1292
HinfI	GANTC	6 cut(s)	233, 555, 755, 968, 1033, 1375
HpaI	GTTAAC	1 cut(s)	600
HpaII	CCGG	1 cut(s)	965
HphI	GGTGA	1 cut(s)	1437
Hpy166II	GTNNAC	6 cut(s)	232, 426, 501, 600, 850, 1408
Hpy188I	TCNGA	8 cut(s)	126, 310, 780, 858, 891, 1105, 1219, 1576
Hpy188III	TCNNGA	5 cut(s)	170, 695, 1228, 1507, 1559
Hpy8I	GTNNAC	6 cut(s)	232, 426, 501, 600, 850, 1408
Hpy99I	CGWCG	3 cut(s)	233, 284, 1144
HpyAV	CCTTC	4 cut(s)	838, 1073, 1178, 1325
HpyCH4III	ACNGT	3 cut(s)	744, 1225, 1258
HpyCH4IV	ACGT	2 cut(s)	262, 1410
HpyF10VI	GCNNNNNNNGC	7 cut(s)	49, 100, 103, 106, 109, 112, 1126
HpyF3I	CTNAG	6 cut(s)	224, 508, 777, 1074, 1113, 1239
HpySE526I	ACGT	2 cut(s)	262, 1410
Ksp22I	TGATCA	5 cut(s)	166, 256, 373, 697, 1105
KspAI	GTTAAC	1 cut(s)	600
LmnI	GCTCC	1 cut(s)	1075
LweI	GCATC	4 cut(s)	391, 815, 1263, 1364
MaeI	CTAG	3 cut(s)	617, 656, 987
MaeII	ACGT	2 cut(s)	262, 1410
MaeIII	GTNAC	3 cut(s)	458, 725, 824
MflI	RGATCY	2 cut(s)	67, 1453
MhlI	GDGCHC	1 cut(s)	1410
MluCI	AATT	8 cut(s)	151, 520, 529, 667, 786, 1006, 1173, 1441
MlyI	GAGTC	2 cut(s)	227, 1042
MmeI	TCCRAC	5 cut(s)	159, 234, 300, 364, 456
MroXI	GAANNNNTTC	1 cut(s)	1374
MseI	TTAA	7 cut(s)	291, 338, 345, 599, 731, 750, 1386
MslI	CAYNNNNRTG	1 cut(s)	873
MspI	CCGG	1 cut(s)	965
Mva1269I	GAATGC	1 cut(s)	17
MwoI	GCNNNNNNNGC	7 cut(s)	49, 100, 103, 106, 109, 112, 1126
NcoI	CCATGG	3 cut(s)	89, 862, 1457
NlaIV	GGNNCC	4 cut(s)	326, 1281, 1455, 1530
NmeAIII	GCCGAG	1 cut(s)	782
NmuCI	GTSAC	2 cut(s)	458, 725
PagI	TCATGA	1 cut(s)	694
PctI	GAATGC	1 cut(s)	17
PdmI	GAANNNNTTC	1 cut(s)	1374
PfeI	GAWTC	4 cut(s)	555, 755, 968, 1375
PflMI	CCANNNNNTGG	1 cut(s)	90
PleI	GAGTC	2 cut(s)	227, 1041
PmaCI	CACGTG	1 cut(s)	1411
PmlI	CACGTG	1 cut(s)	1411
PpsI	GAGTC	2 cut(s)	227, 1041
Ppu21I	YACGTR	1 cut(s)	1411
PshBI	ATTAAT	1 cut(s)	291
Psp1406I	AACGTT	1 cut(s)	262
PspCI	CACGTG	1 cut(s)	1411
PspN4I	GGNNCC	4 cut(s)	326, 1281, 1455, 1530
PspPI	GGNCC	3 cut(s)	630, 1312, 1516
PsrI	GAACNNNNNNTAC	2 cut(s)	1373, 1405
PstI	CTGCAG	1 cut(s)	919
PsuI	RGATCY	2 cut(s)	67, 1453
RseI	CAYNNNNRTG	1 cut(s)	873
SalI	GTCGAC	1 cut(s)	230
SaqAI	TTAA	7 cut(s)	291, 338, 345, 599, 731, 750, 1386
Sau96I	GGNCC	3 cut(s)	630, 1312, 1516
ScaI	AGTACT	7 cut(s)	131, 190, 490, 660, 938, 991, 1362
SchI	GAGTC	2 cut(s)	227, 1042
SduI	GDGCHC	1 cut(s)	1410
SfaNI	GCATC	4 cut(s)	391, 815, 1263, 1364
SfcI	CTRYAG	2 cut(s)	915, 1254
SinI	GGWCC	1 cut(s)	630
SmiMI	CAYNNNNRTG	1 cut(s)	873
SmlI	CTYRAG	3 cut(s)	217, 1505, 1548
SmoI	CTYRAG	3 cut(s)	217, 1505, 1548
SpeI	ACTAGT	2 cut(s)	655, 986
Sse9I	AATT	8 cut(s)	151, 520, 529, 667, 786, 1006, 1173, 1441
SsiI	CCGC	4 cut(s)	15, 513, 737, 829
SspI	AATATT	1 cut(s)	577
SspMI	CTAG	3 cut(s)	617, 656, 987
StyI	CCWWGG	4 cut(s)	89, 414, 862, 1457
TaaI	ACNGT	3 cut(s)	744, 1225, 1258
TaiI	ACGT	2 cut(s)	265, 1413
TaqI	TCGA	3 cut(s)	231, 900, 1036
TasI	AATT	8 cut(s)	151, 520, 529, 667, 786, 1006, 1173, 1441
TatI	WGTACW	8 cut(s)	129, 188, 488, 658, 936, 989, 1360, 1380
TauI	GCSGC	2 cut(s)	515, 739
TfiI	GAWTC	4 cut(s)	555, 755, 968, 1375
Tru1I	TTAA	7 cut(s)	291, 338, 345, 599, 731, 750, 1386
Tru9I	TTAA	7 cut(s)	291, 338, 345, 599, 731, 750, 1386
TseFI	GTSAC	2 cut(s)	458, 725
Tsp45I	GTSAC	2 cut(s)	458, 725
TspDTI	ATGAA	9 cut(s)	385, 547, 587, 857, 969, 1055, 1197, 1251, 1527
TspGWI	ACGGA	1 cut(s)	1217
Van91I	CCANNNNNTGG	1 cut(s)	90
VneI	GTGCAC	1 cut(s)	1406
VpaK11BI	GGWCC	1 cut(s)	630
VspI	ATTAAT	1 cut(s)	291
XapI	RAATTY	2 cut(s)	1006, 1441
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1455
XmiI	GTMKAC	2 cut(s)	231, 849
XmnI	GAANNNNTTC	1 cut(s)	1374
XspI	CTAG	3 cut(s)	617, 656, 987
ZrmI	AGTACT	7 cut(s)	131, 190, 490, 660, 938, 991, 1362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.