Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004404

Physical Location & Seq

Genomic Coordinates Reverse (-)

33173198 .. 33176284

Gene Structure 3087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g36070.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1596 bp

ATGGCAGCTGACCAATGCCGACTCGATAGTACTGTTAACTGTGTTGTCATCTCTTCCTCTACACAGCCAAACTGGTGGGATCATGATCACCTTCATGCAGCAGCTGCAGCTGCCGGTGCCGGCTCTCATCTCTCGGCTTCTTCCTGGCCGTGGCAACGCCAGCAGCAGCAGCAGCAGCAGCAGAAACCAAACCCTAATTCCAACTCTTCTTGCGACGAAGATGTTTCAATATCCAGTACTTCCTTTACCAATGCCTCCAACCACTCCAGCCTCAGTGTCGATTCCTCTCGCAGACTTGTTGATCAGCGTTCTGCTTCGTCCAACGACGACTTGAATAATATTGGAGAACAGGTTTCTGATAATCAAATATGGAGCCATGTTTTATTAAGTGCCGGAAACAATGGTTTGAACGGCAGTATGACTCATGATGTTGGAGAGAACTTCCTTGATGCACTATCATCCAAGAACTTGACCAATACTGCTATGTACGACCCTGCTTGTGATTACTTGAAGAAATTGGACAACGCGAGTAGCAATTGGGAGTTCACGAACTCATCGACAACTGCAGCTACTATGCATGCATCTAATCTCAACAATTTCGAAAGGCAAATCAACATTAATGGATCGTTTAGCAACGAGAACTTGTCTAATCTAGTGAGCACCTGGTCTATTGCACCACCGGAACCACAATTAGTCAGTAGCCCTTTCTTCAATAATCTTCCTCATCAAGTGTCATGTTACGGTGCTCATAATAATTTGATGAAAGTTGAAAGTGCTGCACAATTAGCTGGAGCAAACATACATGGAAGGCCATTTAGTTCTGAGAACGGGAGCAACATTGACTACCAGATTGGCCTCAACAACGCAATGGCCGCAGATAATAACTACTATGGATCCGGAAACGGTTTGGTGATGCCTGATTCGTACTCATCATCCAACAGTGCTAGAAGTTTCACGGATGTCATATCTTTTAATAGTCGTTTAGGCAAGCCGTTGATAGATCATGTTCACCATGCACAAAAGCCTAGTAACTTCAAATCTTCGATCAACTTATCTGATAATACTTGTAAGAAGCAAGGCCTCCAAACTTCTTCTCCGGTAAAAATGAGTGGAAGAGGACAAGGAACTGCAAATGAATCTGCAGGGAAGAAGAAAAGAACGGAGGATAGTAGTACATCATCAGAAACAGTTCTGAAAAAGCCCAAGCAAGAAACTTCAGCAGCGAATTCATCATCATCATCTGTAAAGATGCAGGCACCAAAAGTCAAGGTTGCGGACAAGATCACTGCCCTTCAACAAATTGTGTCTCCATTTGGAAAGACAGATACGGCTTCAGTACTATATGAAGCGATTCAGTACATCAAGTTTCTCCAAGACCAAATACATGTGCTATCGAGTAGCCCTTATTTGAAGACGAATACCCATAAGGATTCCTGGGGAAAATTGGATCAAATTAGGGGAGATCATCAGGTAAAGATGGATCTGAAGAGCAGAGGCCTATGCTTGGTGCCTACGTCATGTACACCTCAGGTTTATCGTGAAAATACCGGATCAGACTACTGGACACCAGCATACAGAGGCTGTTTGTATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

532

Amino Acids

57.81

Weight (kDa)

6.78

Isoelectric Point (pI)

44.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31050 AT1G31050 AT1G31050 AT1G31050 AT1G31050 AT1G31050 AT1G31050 AT1G31050
fragaria_vesca	FvH4_4g36070 FvH4_4g36070 FvH4_4g36070 FvH4_4g36070 FvH4_4g36070 FvH4_4g36070 FvH4_4g36070 FvH4_4g36070 FvH4_4g36070
malus_domestica	MD13G1012600.v1.1 MD16G1009300.v1.1
prunus_persica	Prupe.1G341300_v2.0.a1 Prupe.1G341300_v2.0.a1 Prupe.1G341300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0445691
rosa_laevigata	RLG00000005716
rosa_roxburghii	Rroxscaffold_5G00386180
rosa_rugosa	Rorug04G0364700 Rorug04G0364800 Rorug04G0364900
rosa_samantha	Rh4AG425700 Rh4CG452800 Rh4DG434000
rosa_wichuraiana	Rw4G036470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	116, 1255, 1507
AccII	CGCG	1 cut(s)	527
AccIII	TCCGGA	1 cut(s)	896
AciI	CCGC	2 cut(s)	873, 1274
AclWI	GGATC	7 cut(s)	87, 631, 888, 901, 1455, 1488, 1558
AcoI	YGGCCR	2 cut(s)	146, 870
AcsI	RAATTY	1 cut(s)	1225
AcuI	CTGAAG	3 cut(s)	1200, 1317, 1505
AfaI	GTAC	8 cut(s)	31, 238, 488, 926, 1174, 1338, 1358, 1522
AfiI	CCNNNNNNNGG	2 cut(s)	150, 1504
AflIII	ACRYGT	1 cut(s)	1384
AgsI	TTSAA	9 cut(s)	228, 334, 409, 511, 712, 770, 1036, 1295, 1411
AjnI	CCWGG	3 cut(s)	143, 662, 1433
AjuI	GAANNNNNNNTTGG	2 cut(s)	181, 213
AluBI	AGCT	5 cut(s)	8, 104, 110, 569, 788
AluI	AGCT	5 cut(s)	8, 104, 110, 569, 788
Alw21I	GWGCWC	2 cut(s)	662, 748
Alw26I	GTCTC	1 cut(s)	1311
AlwI	GGATC	7 cut(s)	87, 631, 888, 901, 1455, 1488, 1558
AlwNI	CAGNNNCTG	2 cut(s)	104, 1581
Aor13HI	TCCGGA	1 cut(s)	896
AoxI	GGCC	6 cut(s)	146, 809, 853, 870, 1078, 1495
ApoI	RAATTY	1 cut(s)	1225
AseI	ATTAAT	1 cut(s)	618
Asp700I	GAANNNNTTC	2 cut(s)	1188, 1350
AsuHPI	GGTGA	3 cut(s)	80, 922, 1001
AsuII	TTCGAA	1 cut(s)	600
AxyI	CCTNAGG	1 cut(s)	1527
BamHI	GGATCC	1 cut(s)	893
BanI	GGYRCC	3 cut(s)	116, 1255, 1507
BbsI	GAAGAC	1 cut(s)	1418
Bbv12I	GWGCWC	2 cut(s)	662, 748
BccI	CCATC	1 cut(s)	1471
BceAI	ACGGC	4 cut(s)	133, 427, 976, 1344
BciT130I	CCWGG	3 cut(s)	145, 664, 1435
BclI	TGATCA	2 cut(s)	85, 301
BcoDI	GTCTC	1 cut(s)	1311
BfaI	CTAG	3 cut(s)	653, 945, 1026
BfmI	CTRYAG	3 cut(s)	105, 564, 1140
BmcAI	AGTACT	3 cut(s)	31, 238, 1338
Bme1390I	CCNGG	3 cut(s)	145, 664, 1435
BmiI	GGNNCC	6 cut(s)	118, 374, 684, 895, 1257, 1509
BmrFI	CCNGG	3 cut(s)	145, 664, 1435
BmsI	GCATC	4 cut(s)	439, 590, 903, 1239
BpiI	GAAGAC	1 cut(s)	1418
BpmI	CTGGAG	2 cut(s)	250, 810
Bpu14I	TTCGAA	1 cut(s)	600
BsaBI	GATNNNNATC	1 cut(s)	84
BsaJI	CCNNGG	2 cut(s)	149, 1434
BsaWI	WCCGGW	4 cut(s)	679, 896, 1096, 1547
BsaXI	ACNNNNNCTCC	4 cut(s)	336, 366, 1078, 1108
Bsc4I	CCNNNNNNNGG	2 cut(s)	150, 1504
Bse118I	RCCGGY	2 cut(s)	113, 119
Bse1I	ACTGG	3 cut(s)	77, 234, 1565
Bse21I	CCTNAGG	1 cut(s)	1527
Bse3DI	GCAATG	1 cut(s)	873
Bse8I	GATNNNNATC	1 cut(s)	84
BseAI	TCCGGA	1 cut(s)	896
BseBI	CCWGG	3 cut(s)	145, 664, 1435
BseDI	CCNNGG	2 cut(s)	149, 1434
BseGI	GGATG	3 cut(s)	458, 932, 964
BseJI	GATNNNNATC	1 cut(s)	84
BseLI	CCNNNNNNNGG	2 cut(s)	150, 1504
BseMI	GCAATG	1 cut(s)	873
BseMII	CTCAG	3 cut(s)	286, 813, 1541
BseNI	ACTGG	3 cut(s)	77, 234, 1565
BsgI	GTGCAG	1 cut(s)	762
Bsh1236I	CGCG	1 cut(s)	527
BshFI	GGCC	6 cut(s)	148, 811, 855, 872, 1080, 1497
BshNI	GGYRCC	3 cut(s)	116, 1255, 1507
BsiHKAI	GWGCWC	2 cut(s)	662, 748
BsiSI	CCGG	7 cut(s)	114, 120, 393, 680, 897, 1097, 1548
BslI	CCNNNNNNNGG	2 cut(s)	150, 1504
BsmAI	GTCTC	1 cut(s)	1311
BsnI	GGCC	6 cut(s)	148, 811, 855, 872, 1080, 1497
Bsp119I	TTCGAA	1 cut(s)	600
Bsp1286I	GDGCHC	2 cut(s)	662, 748
Bsp13I	TCCGGA	1 cut(s)	896
Bsp1407I	TGTACA	1 cut(s)	1520
BspACI	CCGC	2 cut(s)	873, 1274
BspANI	GGCC	6 cut(s)	148, 811, 855, 872, 1080, 1497
BspCNI	CTCAG	3 cut(s)	285, 814, 1540
BspEI	TCCGGA	1 cut(s)	896
BspFNI	CGCG	1 cut(s)	527
BspHI	TCATGA	2 cut(s)	82, 424
BspLI	GGNNCC	6 cut(s)	118, 374, 684, 895, 1257, 1509
BspMAI	CTGCAG	3 cut(s)	109, 568, 1144
BspPI	GGATC	7 cut(s)	87, 631, 888, 901, 1455, 1488, 1558
BspQI	GCTCTTC	1 cut(s)	1481
BspT104I	TTCGAA	1 cut(s)	600
BspT107I	GGYRCC	3 cut(s)	116, 1255, 1507
BsrDI	GCAATG	1 cut(s)	873
BsrFI	RCCGGY	2 cut(s)	113, 119
BsrGI	TGTACA	1 cut(s)	1520
BsrI	ACTGG	3 cut(s)	77, 234, 1565
BssAI	RCCGGY	2 cut(s)	113, 119
BssECI	CCNNGG	2 cut(s)	149, 1434
Bst2UI	CCWGG	3 cut(s)	145, 664, 1435
Bst4CI	ACNGT	6 cut(s)	34, 41, 743, 905, 941, 1189
Bst6I	CTCTTC	4 cut(s)	58, 211, 1108, 1481
BstAPI	GCANNNNNTGC	1 cut(s)	104
BstAUI	TGTACA	1 cut(s)	1520
BstBI	TTCGAA	1 cut(s)	600
BstC8I	GCNNGC	5 cut(s)	121, 161, 579, 989, 1254
BstDEI	CTNAG	3 cut(s)	272, 822, 1527
BstDSI	CCRYGG	1 cut(s)	149
BstF5I	GGATG	3 cut(s)	458, 932, 964
BstFNI	CGCG	1 cut(s)	527
BstMAI	GTCTC	1 cut(s)	1311
BstNI	CCWGG	3 cut(s)	145, 664, 1435
BstNSI	RCATGY	2 cut(s)	581, 1388
BstSCI	CCNGG	3 cut(s)	143, 662, 1433
BstSFI	CTRYAG	3 cut(s)	105, 564, 1140
BstUI	CGCG	1 cut(s)	527
BstV2I	GAAGAC	1 cut(s)	1418
BstX2I	RGATCY	2 cut(s)	893, 1480
BstXI	CCANNNNNNTGG	1 cut(s)	75
BstYI	RGATCY	2 cut(s)	893, 1480
Bsu36I	CCTNAGG	1 cut(s)	1527
BsuRI	GGCC	6 cut(s)	148, 811, 855, 872, 1080, 1497
BtgI	CCRYGG	1 cut(s)	149
BtsCI	GGATG	3 cut(s)	458, 932, 964
BtsI	GCAGTG	1 cut(s)	1284
BtsIMutI	CAGTG	3 cut(s)	280, 946, 1284
Cac8I	GCNNGC	5 cut(s)	121, 161, 579, 989, 1254
CaiI	CAGNNNCTG	2 cut(s)	104, 1581
CciI	TCATGA	2 cut(s)	82, 424
Cfr10I	RCCGGY	2 cut(s)	113, 119
CsiI	ACCWGGT	1 cut(s)	662
Csp6I	GTAC	8 cut(s)	30, 237, 487, 925, 1173, 1337, 1357, 1521
CviQI	GTAC	8 cut(s)	30, 237, 487, 925, 1173, 1337, 1357, 1521
DdeI	CTNAG	3 cut(s)	272, 822, 1527
EaeI	YGGCCR	2 cut(s)	146, 870
Eam1104I	CTCTTC	4 cut(s)	58, 211, 1108, 1481
EarI	CTCTTC	4 cut(s)	58, 211, 1108, 1481
Eco147I	AGGCCT	2 cut(s)	1080, 1497
Eco57I	CTGAAG	3 cut(s)	1200, 1317, 1505
Eco81I	CCTNAGG	1 cut(s)	1527
EcoRI	GAATTC	1 cut(s)	1225
EcoRII	CCWGG	3 cut(s)	143, 662, 1433
EcoT22I	ATGCAT	2 cut(s)	579, 583
FbaI	TGATCA	2 cut(s)	85, 301
FokI	GGATG	3 cut(s)	445, 919, 971
FspBI	CTAG	3 cut(s)	653, 945, 1026
GsuI	CTGGAG	2 cut(s)	250, 810
HaeIII	GGCC	6 cut(s)	148, 811, 855, 872, 1080, 1497
HapII	CCGG	7 cut(s)	114, 120, 393, 680, 897, 1097, 1548
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HinfI	GANTC	7 cut(s)	21, 281, 421, 920, 1136, 1351, 1430
HpaI	GTTAAC	1 cut(s)	37
HpaII	CCGG	7 cut(s)	114, 120, 393, 680, 897, 1097, 1548
HphI	GGTGA	3 cut(s)	80, 922, 1001
Hpy166II	GTNNAC	4 cut(s)	37, 546, 1009, 1523
Hpy188I	TCNGA	7 cut(s)	358, 823, 1057, 1183, 1194, 1485, 1555
Hpy188III	TCNNGA	5 cut(s)	83, 425, 547, 897, 1538
Hpy8I	GTNNAC	4 cut(s)	37, 546, 1009, 1523
Hpy99I	CGWCG	2 cut(s)	218, 329
HpyAV	CCTTC	3 cut(s)	101, 801, 1301
HpyCH4III	ACNGT	6 cut(s)	34, 41, 743, 905, 941, 1189
HpyCH4IV	ACGT	1 cut(s)	1514
HpyF3I	CTNAG	3 cut(s)	272, 822, 1527
HpySE526I	ACGT	1 cut(s)	1514
Kpn2I	TCCGGA	1 cut(s)	896
KroI	GCCGGC	1 cut(s)	119
KroNI	GCCGGC	1 cut(s)	121
Ksp22I	TGATCA	2 cut(s)	85, 301
KspAI	GTTAAC	1 cut(s)	37
LguI	GCTCTTC	1 cut(s)	1481
LmnI	GCTCC	3 cut(s)	372, 791, 831
LweI	GCATC	4 cut(s)	439, 590, 903, 1239
MabI	ACCWGGT	1 cut(s)	662
MaeI	CTAG	3 cut(s)	653, 945, 1026
MaeII	ACGT	1 cut(s)	1514
MaeIII	GTNAC	2 cut(s)	737, 1028
MfeI	CAATTG	1 cut(s)	535
MflI	RGATCY	2 cut(s)	893, 1480
MhlI	GDGCHC	2 cut(s)	662, 748
MlyI	GAGTC	2 cut(s)	15, 415
MmeI	TCCRAC	5 cut(s)	225, 282, 345, 412, 960
Mph1103I	ATGCAT	2 cut(s)	579, 583
MroI	TCCGGA	1 cut(s)	896
MroNI	GCCGGC	1 cut(s)	119
MroXI	GAANNNNTTC	2 cut(s)	1188, 1350
MseI	TTAA	4 cut(s)	36, 386, 618, 972
MslI	CAYNNNNRTG	1 cut(s)	93
MspA1I	CMGCKG	3 cut(s)	8, 104, 110
MspI	CCGG	7 cut(s)	114, 120, 393, 680, 897, 1097, 1548
MspR9I	CCNGG	3 cut(s)	145, 664, 1435
MunI	CAATTG	1 cut(s)	535
MvaI	CCWGG	3 cut(s)	145, 664, 1435
MvnI	CGCG	1 cut(s)	527
NaeI	GCCGGC	1 cut(s)	121
NgoMIV	GCCGGC	1 cut(s)	119
NlaIV	GGNNCC	6 cut(s)	118, 374, 684, 895, 1257, 1509
NmeAIII	GCCGAG	1 cut(s)	113
NsiI	ATGCAT	2 cut(s)	579, 583
NspI	RCATGY	2 cut(s)	581, 1388
NspV	TTCGAA	1 cut(s)	600
PaeI	GCATGC	1 cut(s)	581
PagI	TCATGA	2 cut(s)	82, 424
PceI	AGGCCT	2 cut(s)	1080, 1497
PciI	ACATGT	1 cut(s)	1384
PciSI	GCTCTTC	1 cut(s)	1481
PcsI	WCGNNNNNNNCGW	1 cut(s)	554
PdiI	GCCGGC	1 cut(s)	121
PdmI	GAANNNNTTC	2 cut(s)	1188, 1350
PfeI	GAWTC	5 cut(s)	281, 920, 1136, 1351, 1430
PleI	GAGTC	2 cut(s)	15, 415
PpsI	GAGTC	2 cut(s)	15, 415
PscI	ACATGT	1 cut(s)	1384
PshBI	ATTAAT	1 cut(s)	618
Psp6I	CCWGG	3 cut(s)	143, 662, 1433
PspGI	CCWGG	3 cut(s)	143, 662, 1433
PspN4I	GGNNCC	6 cut(s)	118, 374, 684, 895, 1257, 1509
PstI	CTGCAG	3 cut(s)	109, 568, 1144
PstNI	CAGNNNCTG	2 cut(s)	104, 1581
PsuI	RGATCY	2 cut(s)	893, 1480
PvuII	CAGCTG	3 cut(s)	8, 104, 110
RsaI	GTAC	8 cut(s)	31, 238, 488, 926, 1174, 1338, 1358, 1522
RsaNI	GTAC	8 cut(s)	30, 237, 487, 925, 1173, 1337, 1357, 1521
RseI	CAYNNNNRTG	1 cut(s)	93
SapI	GCTCTTC	1 cut(s)	1481
SaqAI	TTAA	4 cut(s)	36, 386, 618, 972
ScaI	AGTACT	3 cut(s)	31, 238, 1338
SchI	GAGTC	2 cut(s)	15, 415
ScrFI	CCNGG	3 cut(s)	145, 664, 1435
SduI	GDGCHC	2 cut(s)	662, 748
SexAI	ACCWGGT	1 cut(s)	662
SfaNI	GCATC	4 cut(s)	439, 590, 903, 1239
SfcI	CTRYAG	3 cut(s)	105, 564, 1140
SfuI	TTCGAA	1 cut(s)	600
SmiMI	CAYNNNNRTG	1 cut(s)	93
SphI	GCATGC	1 cut(s)	581
SseBI	AGGCCT	2 cut(s)	1080, 1497
SsiI	CCGC	2 cut(s)	873, 1274
SspI	AATATT	1 cut(s)	340
SspMI	CTAG	3 cut(s)	653, 945, 1026
StuI	AGGCCT	2 cut(s)	1080, 1497
StyD4I	CCNGG	3 cut(s)	143, 662, 1433
TaaI	ACNGT	6 cut(s)	34, 41, 743, 905, 941, 1189
TaiI	ACGT	1 cut(s)	1517
TaqI	TCGA	6 cut(s)	24, 279, 557, 600, 1043, 1394
TatI	WGTACW	6 cut(s)	29, 236, 1172, 1336, 1356, 1520
TauI	GCSGC	1 cut(s)	875
TfiI	GAWTC	5 cut(s)	281, 920, 1136, 1351, 1430
Tru1I	TTAA	4 cut(s)	36, 386, 618, 972
Tru9I	TTAA	4 cut(s)	36, 386, 618, 972
TscAI	CASTG	3 cut(s)	280, 946, 1291
TspDTI	ATGAA	5 cut(s)	83, 776, 1149, 1218, 1359
TspGWI	ACGGA	2 cut(s)	971, 1175
TspRI	CASTG	3 cut(s)	280, 946, 1291
VspI	ATTAAT	1 cut(s)	618
XapI	RAATTY	1 cut(s)	1225
XceI	RCATGY	2 cut(s)	581, 1388
XmnI	GAANNNNTTC	2 cut(s)	1188, 1350
XspI	CTAG	3 cut(s)	653, 945, 1026
ZrmI	AGTACT	3 cut(s)	31, 238, 1338
Zsp2I	ATGCAT	2 cut(s)	579, 583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.