helix loop helix domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G31050 AT1G31050 AT1G31050 AT1G31050 AT1G31050 AT1G31050 AT1G31050 AT1G31050 |
| fragaria_vesca | FvH4_4g36070 FvH4_4g36070 FvH4_4g36070 FvH4_4g36070 FvH4_4g36070 FvH4_4g36070 FvH4_4g36070 FvH4_4g36070 FvH4_4g36070 |
| malus_domestica | MD13G1012600.v1.1 MD16G1009300.v1.1 |
| prunus_persica | Prupe.1G341300_v2.0.a1 Prupe.1G341300_v2.0.a1 Prupe.1G341300_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr4g0445691 |
| rosa_laevigata | RLG00000005716 |
| rosa_roxburghii | Rroxscaffold_5G00386180 |
| rosa_rugosa | Rorug04G0364700 Rorug04G0364800 Rorug04G0364900 |
| rosa_samantha | Rh4AG425700 Rh4CG452800 Rh4DG434000 |
| rosa_wichuraiana | Rw4G036470 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 89 |
| Acc36I | ACCTGC | 4 cut(s) | 89, 304, 358, 541 |
| AccB1I | GGYRCC | 3 cut(s) | 1109, 1387, 1636 |
| AciI | CCGC | 3 cut(s) | 170, 788, 1092 |
| AclI | AACGTT | 1 cut(s) | 1008 |
| AclWI | GGATC | 9 cut(s) | 90, 768, 861, 874, 1069, 1421, 1556, 1569, 1687 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 3 cut(s) | 475, 1117, 1549 |
| AfaI | GTAC | 7 cut(s) | 25, 197, 568, 587, 1046, 1470, 1490 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 962, 1633 |
| AjnI | CCWGG | 2 cut(s) | 231, 722 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 978, 1010, 1181, 1213 |
| Alw21I | GWGCWC | 1 cut(s) | 722 |
| Alw26I | GTCTC | 3 cut(s) | 342, 1401, 1443 |
| AlwI | GGATC | 9 cut(s) | 90, 768, 861, 874, 1069, 1421, 1556, 1569, 1687 |
| Ama87I | CYCGRG | 1 cut(s) | 862 |
| AoxI | GGCC | 5 cut(s) | 3, 997, 1164, 1419, 1624 |
| ApeKI | GCWGC | 8 cut(s) | 92, 95, 110, 160, 178, 181, 596, 905 |
| ApoI | RAATTY | 3 cut(s) | 475, 1117, 1549 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 608, 1482 |
| AspLEI | GCGC | 2 cut(s) | 490, 736 |
| AspS9I | GGNCC | 2 cut(s) | 726, 1420 |
| AsuHPI | GGTGA | 3 cut(s) | 727, 761, 1022 |
| AsuNHI | GCTAGC | 1 cut(s) | 61 |
| AvaI | CYCGRG | 1 cut(s) | 862 |
| AvaII | GGWCC | 1 cut(s) | 726 |
| AxyI | CCTNAGG | 1 cut(s) | 1656 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 130, 163 |
| BamHI | GGATCC | 2 cut(s) | 866, 1561 |
| BanI | GGYRCC | 3 cut(s) | 1109, 1387, 1636 |
| BbsI | GAAGAC | 2 cut(s) | 120, 1550 |
| Bbv12I | GWGCWC | 1 cut(s) | 722 |
| BbvCI | CCTCAGC | 1 cut(s) | 174 |
| BbvI | GCAGC | 8 cut(s) | 82, 104, 122, 172, 190, 193, 583, 892 |
| BccI | CCATC | 2 cut(s) | 780, 826 |
| BceAI | ACGGC | 3 cut(s) | 940, 1054, 1434 |
| BciT130I | CCWGG | 2 cut(s) | 233, 724 |
| BclI | TGATCA | 6 cut(s) | 322, 354, 457, 514, 766, 1219 |
| BcoDI | GTCTC | 3 cut(s) | 342, 1401, 1443 |
| BfaI | CTAG | 2 cut(s) | 62, 752 |
| BfmI | CTRYAG | 3 cut(s) | 96, 311, 1359 |
| BfuAI | ACCTGC | 4 cut(s) | 89, 304, 358, 541 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1152 |
| BmcAI | AGTACT | 4 cut(s) | 25, 197, 568, 1046 |
| Bme1390I | CCNGG | 2 cut(s) | 233, 724 |
| Bme18I | GGWCC | 1 cut(s) | 726 |
| BmeT110I | CYCGRG | 1 cut(s) | 862 |
| BmgT120I | GGNCC | 2 cut(s) | 726, 1420 |
| BmiI | GGNNCC | 6 cut(s) | 392, 868, 1111, 1389, 1563, 1638 |
| BmrFI | CCNGG | 2 cut(s) | 233, 724 |
| BmsI | GCATC | 6 cut(s) | 475, 608, 814, 1371, 1472, 1588 |
| BmtI | GCTAGC | 1 cut(s) | 65 |
| BpiI | GAAGAC | 2 cut(s) | 120, 1550 |
| BpmI | CTGGAG | 1 cut(s) | 232 |
| Bpu10I | CCTNAGC | 3 cut(s) | 174, 287, 1344 |
| BpuEI | CTTGAG | 2 cut(s) | 265, 1598 |
| BsaBI | GATNNNNATC | 2 cut(s) | 765, 771 |
| BsaJI | CCNNGG | 3 cut(s) | 155, 1167, 1565 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 354, 384 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 962, 1633 |
| Bse118I | RCCGGY | 1 cut(s) | 1106 |
| Bse1I | ACTGG | 3 cut(s) | 80, 561, 870 |
| Bse21I | CCTNAGG | 1 cut(s) | 1656 |
| Bse3DI | GCAATG | 2 cut(s) | 729, 1023 |
| Bse8I | GATNNNNATC | 2 cut(s) | 765, 771 |
| BseBI | CCWGG | 2 cut(s) | 233, 724 |
| BseDI | CCNNGG | 3 cut(s) | 155, 1167, 1565 |
| BseGI | GGATG | 2 cut(s) | 241, 1715 |
| BseJI | GATNNNNATC | 2 cut(s) | 765, 771 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 962, 1633 |
| BseMI | GCAATG | 2 cut(s) | 729, 1023 |
| BseMII | CTCAG | 4 cut(s) | 134, 188, 842, 1670 |
| BseNI | ACTGG | 3 cut(s) | 80, 561, 870 |
| BseRI | GAGGAG | 6 cut(s) | 289, 936, 939, 942, 945, 948 |
| BseXI | GCAGC | 8 cut(s) | 82, 104, 122, 172, 190, 193, 583, 892 |
| BsgI | GTGCAG | 1 cut(s) | 123 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1575 |
| BshFI | GGCC | 5 cut(s) | 5, 999, 1166, 1421, 1626 |
| BshNI | GGYRCC | 3 cut(s) | 1109, 1387, 1636 |
| BsiEI | CGRYCG | 1 cut(s) | 1575 |
| BsiHKAI | GWGCWC | 1 cut(s) | 722 |
| BsiHKCI | CYCGRG | 1 cut(s) | 862 |
| BsiSI | CCGG | 1 cut(s) | 1107 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 962, 1633 |
| BsmAI | GTCTC | 3 cut(s) | 342, 1401, 1443 |
| BsmBI | CGTCTC | 1 cut(s) | 342 |
| BsmI | GAATGC | 1 cut(s) | 17 |
| BsnI | GGCC | 5 cut(s) | 5, 999, 1166, 1421, 1626 |
| BsoBI | CYCGRG | 1 cut(s) | 862 |
| Bsp1286I | GDGCHC | 1 cut(s) | 722 |
| Bsp19I | CCATGG | 2 cut(s) | 155, 1565 |
| BspACI | CCGC | 3 cut(s) | 170, 788, 1092 |
| BspANI | GGCC | 5 cut(s) | 5, 999, 1166, 1421, 1626 |
| BspCNI | CTCAG | 4 cut(s) | 133, 187, 841, 1669 |
| BspHI | TCATGA | 2 cut(s) | 460, 763 |
| BspLI | GGNNCC | 6 cut(s) | 392, 868, 1111, 1389, 1563, 1638 |
| BspMAI | CTGCAG | 2 cut(s) | 100, 315 |
| BspMI | ACCTGC | 4 cut(s) | 89, 304, 358, 541 |
| BspOI | GCTAGC | 1 cut(s) | 65 |
| BspPI | GGATC | 9 cut(s) | 90, 768, 861, 874, 1069, 1421, 1556, 1569, 1687 |
| BspT107I | GGYRCC | 3 cut(s) | 1109, 1387, 1636 |
| BsrDI | GCAATG | 2 cut(s) | 729, 1023 |
| BsrFI | RCCGGY | 1 cut(s) | 1106 |
| BsrI | ACTGG | 3 cut(s) | 80, 561, 870 |
| BssAI | RCCGGY | 1 cut(s) | 1106 |
| BssECI | CCNNGG | 3 cut(s) | 155, 1167, 1565 |
| BssT1I | CCWWGG | 3 cut(s) | 155, 1167, 1565 |
| Bst2UI | CCWGG | 2 cut(s) | 233, 724 |
| Bst4CI | ACNGT | 5 cut(s) | 440, 566, 617, 1330, 1363 |
| Bst6I | CTCTTC | 3 cut(s) | 49, 211, 1261 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1022 |
| BstC8I | GCNNGC | 7 cut(s) | 63, 115, 418, 792, 910, 1239, 1386 |
| BstDEI | CTNAG | 7 cut(s) | 120, 174, 287, 828, 1230, 1344, 1656 |
| BstDSI | CCRYGG | 2 cut(s) | 155, 1565 |
| BstF5I | GGATG | 2 cut(s) | 241, 1715 |
| BstHHI | GCGC | 2 cut(s) | 490, 736 |
| BstMAI | GTCTC | 3 cut(s) | 342, 1401, 1443 |
| BstMCI | CGRYCG | 1 cut(s) | 1575 |
| BstNI | CCWGG | 2 cut(s) | 233, 724 |
| BstNSI | RCATGY | 3 cut(s) | 420, 912, 1520 |
| BstSCI | CCNGG | 2 cut(s) | 231, 722 |
| BstSFI | CTRYAG | 3 cut(s) | 96, 311, 1359 |
| BstV1I | GCAGC | 8 cut(s) | 82, 104, 122, 172, 190, 193, 583, 892 |
| BstV2I | GAAGAC | 2 cut(s) | 120, 1550 |
| BstX2I | RGATCY | 3 cut(s) | 82, 866, 1561 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 78 |
| BstYI | RGATCY | 3 cut(s) | 82, 866, 1561 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1656 |
| BsuRI | GGCC | 5 cut(s) | 5, 999, 1166, 1421, 1626 |
| BtgI | CCRYGG | 2 cut(s) | 155, 1565 |
| BtsCI | GGATG | 2 cut(s) | 241, 1715 |
| BtsIMutI | CAGTG | 1 cut(s) | 445 |
| BveI | ACCTGC | 4 cut(s) | 89, 304, 358, 541 |
| Cac8I | GCNNGC | 7 cut(s) | 63, 115, 418, 792, 910, 1239, 1386 |
| CciI | TCATGA | 2 cut(s) | 460, 763 |
| CfoI | GCGC | 2 cut(s) | 490, 736 |
| Cfr10I | RCCGGY | 1 cut(s) | 1106 |
| Cfr13I | GGNCC | 2 cut(s) | 726, 1420 |
| CseI | GACGC | 1 cut(s) | 324 |
| CsiI | ACCWGGT | 1 cut(s) | 722 |
| Csp6I | GTAC | 7 cut(s) | 24, 196, 567, 586, 1045, 1469, 1489 |
| CviQI | GTAC | 7 cut(s) | 24, 196, 567, 586, 1045, 1469, 1489 |
| DdeI | CTNAG | 7 cut(s) | 120, 174, 287, 828, 1230, 1344, 1656 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eam1104I | CTCTTC | 3 cut(s) | 49, 211, 1261 |
| EarI | CTCTTC | 3 cut(s) | 49, 211, 1261 |
| Eco130I | CCWWGG | 3 cut(s) | 155, 1167, 1565 |
| Eco147I | AGGCCT | 1 cut(s) | 1626 |
| Eco47I | GGWCC | 1 cut(s) | 726 |
| Eco81I | CCTNAGG | 1 cut(s) | 1656 |
| Eco88I | CYCGRG | 1 cut(s) | 862 |
| EcoRII | CCWGG | 2 cut(s) | 231, 722 |
| EcoT14I | CCWWGG | 3 cut(s) | 155, 1167, 1565 |
| EcoT22I | ATGCAT | 1 cut(s) | 418 |
| ErhI | CCWWGG | 3 cut(s) | 155, 1167, 1565 |
| Esp3I | CGTCTC | 1 cut(s) | 342 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 13, 45, 1151, 1183 |
| FbaI | TGATCA | 6 cut(s) | 322, 354, 457, 514, 766, 1219 |
| FokI | GGATG | 1 cut(s) | 248 |
| FspBI | CTAG | 2 cut(s) | 62, 752 |
| GlaI | GCGC | 2 cut(s) | 489, 735 |
| GsuI | CTGGAG | 1 cut(s) | 232 |
| HaeIII | GGCC | 5 cut(s) | 5, 999, 1166, 1421, 1626 |
| HapII | CCGG | 1 cut(s) | 1107 |
| HgaI | GACGC | 1 cut(s) | 324 |
| HhaI | GCGC | 2 cut(s) | 490, 736 |
| Hin6I | GCGC | 2 cut(s) | 488, 734 |
| HinP1I | GCGC | 2 cut(s) | 488, 734 |
| HincII | GTYRAC | 6 cut(s) | 229, 295, 510, 696, 1012, 1609 |
| HindII | GTYRAC | 6 cut(s) | 229, 295, 510, 696, 1012, 1609 |
| HindIII | AAGCTT | 1 cut(s) | 1239 |
| HinfI | GANTC | 4 cut(s) | 296, 809, 1076, 1483 |
| HpaI | GTTAAC | 2 cut(s) | 696, 1012 |
| HpaII | CCGG | 1 cut(s) | 1107 |
| HphI | GGTGA | 3 cut(s) | 727, 761, 1022 |
| Hpy166II | GTNNAC | 7 cut(s) | 229, 295, 510, 579, 696, 1012, 1609 |
| Hpy188I | TCNGA | 7 cut(s) | 376, 831, 993, 1219, 1324, 1406, 1684 |
| Hpy188III | TCNNGA | 8 cut(s) | 461, 482, 622, 764, 864, 1333, 1615, 1667 |
| Hpy8I | GTNNAC | 7 cut(s) | 229, 295, 510, 579, 696, 1012, 1609 |
| Hpy99I | CGWCG | 1 cut(s) | 961 |
| HpyAV | CCTTC | 2 cut(s) | 1283, 1433 |
| HpyCH4III | ACNGT | 5 cut(s) | 440, 566, 617, 1330, 1363 |
| HpyCH4IV | ACGT | 2 cut(s) | 588, 1008 |
| HpyF3I | CTNAG | 7 cut(s) | 120, 174, 287, 828, 1230, 1344, 1656 |
| HpySE526I | ACGT | 2 cut(s) | 588, 1008 |
| HspAI | GCGC | 2 cut(s) | 488, 734 |
| Ksp22I | TGATCA | 6 cut(s) | 322, 354, 457, 514, 766, 1219 |
| KspAI | GTTAAC | 2 cut(s) | 696, 1012 |
| LmnI | GCTCC | 2 cut(s) | 135, 935 |
| Lsp1109I | GCAGC | 8 cut(s) | 82, 104, 122, 172, 190, 193, 583, 892 |
| LweI | GCATC | 6 cut(s) | 475, 608, 814, 1371, 1472, 1588 |
| MabI | ACCWGGT | 1 cut(s) | 722 |
| MaeI | CTAG | 2 cut(s) | 62, 752 |
| MaeII | ACGT | 2 cut(s) | 588, 1008 |
| MaeIII | GTNAC | 1 cut(s) | 539 |
| MflI | RGATCY | 3 cut(s) | 82, 866, 1561 |
| MhlI | GDGCHC | 1 cut(s) | 722 |
| MluCI | AATT | 7 cut(s) | 214, 475, 607, 629, 1065, 1117, 1549 |
| MlyI | GAGTC | 1 cut(s) | 290 |
| MmeI | TCCRAC | 4 cut(s) | 225, 297, 448, 1233 |
| Mph1103I | ATGCAT | 1 cut(s) | 418 |
| MroXI | GAANNNNTTC | 2 cut(s) | 608, 1482 |
| MseI | TTAA | 5 cut(s) | 429, 632, 675, 695, 1011 |
| MslI | CAYNNNNRTG | 1 cut(s) | 453 |
| MspA1I | CMGCKG | 3 cut(s) | 95, 124, 596 |
| MspI | CCGG | 1 cut(s) | 1107 |
| MspR9I | CCNGG | 2 cut(s) | 233, 724 |
| Mva1269I | GAATGC | 1 cut(s) | 17 |
| MvaI | CCWGG | 2 cut(s) | 233, 724 |
| NcoI | CCATGG | 2 cut(s) | 155, 1565 |
| NheI | GCTAGC | 1 cut(s) | 61 |
| NlaIV | GGNNCC | 6 cut(s) | 392, 868, 1111, 1389, 1563, 1638 |
| NmuCI | GTSAC | 1 cut(s) | 539 |
| NsiI | ATGCAT | 1 cut(s) | 418 |
| NspI | RCATGY | 3 cut(s) | 420, 912, 1520 |
| PaeI | GCATGC | 2 cut(s) | 420, 912 |
| PagI | TCATGA | 2 cut(s) | 460, 763 |
| PaqCI | CACCTGC | 1 cut(s) | 89 |
| PceI | AGGCCT | 1 cut(s) | 1626 |
| PctI | GAATGC | 1 cut(s) | 17 |
| PdmI | GAANNNNTTC | 2 cut(s) | 608, 1482 |
| PfeI | GAWTC | 3 cut(s) | 809, 1076, 1483 |
| PleI | GAGTC | 1 cut(s) | 290 |
| PpsI | GAGTC | 1 cut(s) | 290 |
| Psp1406I | AACGTT | 1 cut(s) | 1008 |
| Psp6I | CCWGG | 2 cut(s) | 231, 722 |
| PspGI | CCWGG | 2 cut(s) | 231, 722 |
| PspN4I | GGNNCC | 6 cut(s) | 392, 868, 1111, 1389, 1563, 1638 |
| PspPI | GGNCC | 2 cut(s) | 726, 1420 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1481, 1513 |
| PstI | CTGCAG | 2 cut(s) | 100, 315 |
| PsuI | RGATCY | 3 cut(s) | 82, 866, 1561 |
| PvuII | CAGCTG | 3 cut(s) | 95, 124, 596 |
| RsaI | GTAC | 7 cut(s) | 25, 197, 568, 587, 1046, 1470, 1490 |
| RsaNI | GTAC | 7 cut(s) | 24, 196, 567, 586, 1045, 1469, 1489 |
| RseI | CAYNNNNRTG | 1 cut(s) | 453 |
| SaqAI | TTAA | 5 cut(s) | 429, 632, 675, 695, 1011 |
| Sau96I | GGNCC | 2 cut(s) | 726, 1420 |
| ScaI | AGTACT | 4 cut(s) | 25, 197, 568, 1046 |
| SchI | GAGTC | 1 cut(s) | 290 |
| ScrFI | CCNGG | 2 cut(s) | 233, 724 |
| SduI | GDGCHC | 1 cut(s) | 722 |
| SexAI | ACCWGGT | 1 cut(s) | 722 |
| SfaNI | GCATC | 6 cut(s) | 475, 608, 814, 1371, 1472, 1588 |
| SfcI | CTRYAG | 3 cut(s) | 96, 311, 1359 |
| SinI | GGWCC | 1 cut(s) | 726 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 453 |
| SmlI | CTYRAG | 2 cut(s) | 280, 1613 |
| SmoI | CTYRAG | 2 cut(s) | 280, 1613 |
| SphI | GCATGC | 2 cut(s) | 420, 912 |
| Sse9I | AATT | 7 cut(s) | 214, 475, 607, 629, 1065, 1117, 1549 |
| SseBI | AGGCCT | 1 cut(s) | 1626 |
| SsiI | CCGC | 3 cut(s) | 170, 788, 1092 |
| SspI | AATATT | 3 cut(s) | 679, 847, 1226 |
| SspMI | CTAG | 2 cut(s) | 62, 752 |
| StuI | AGGCCT | 1 cut(s) | 1626 |
| StyD4I | CCNGG | 2 cut(s) | 231, 722 |
| StyI | CCWWGG | 3 cut(s) | 155, 1167, 1565 |
| TaaI | ACNGT | 5 cut(s) | 440, 566, 617, 1330, 1363 |
| TaiI | ACGT | 2 cut(s) | 591, 1011 |
| TaqI | TCGA | 5 cut(s) | 483, 602, 621, 812, 1247 |
| TaqII | GACCGA | 1 cut(s) | 1589 |
| TasI | AATT | 7 cut(s) | 214, 475, 607, 629, 1065, 1117, 1549 |
| TatI | WGTACW | 6 cut(s) | 23, 195, 566, 1044, 1468, 1488 |
| TauI | GCSGC | 2 cut(s) | 172, 790 |
| TfiI | GAWTC | 3 cut(s) | 809, 1076, 1483 |
| Tru1I | TTAA | 5 cut(s) | 429, 632, 675, 695, 1011 |
| Tru9I | TTAA | 5 cut(s) | 429, 632, 675, 695, 1011 |
| TscAI | CASTG | 1 cut(s) | 445 |
| TseFI | GTSAC | 1 cut(s) | 539 |
| TseI | GCWGC | 8 cut(s) | 92, 95, 110, 160, 178, 181, 596, 905 |
| Tsp45I | GTSAC | 1 cut(s) | 539 |
| TspGWI | ACGGA | 2 cut(s) | 375, 1322 |
| TspRI | CASTG | 1 cut(s) | 445 |
| VpaK11BI | GGWCC | 1 cut(s) | 726 |
| XapI | RAATTY | 3 cut(s) | 475, 1117, 1549 |
| XceI | RCATGY | 3 cut(s) | 420, 912, 1520 |
| XmnI | GAANNNNTTC | 2 cut(s) | 608, 1482 |
| XspI | CTAG | 2 cut(s) | 62, 752 |
| ZrmI | AGTACT | 4 cut(s) | 25, 197, 568, 1046 |
| Zsp2I | ATGCAT | 1 cut(s) | 418 |