Prupe.1G341300_v2.0.a1

helix loop helix domain

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
32078044 .. 32080993
2950 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G341300.2

Sequence Viewer

Length: 1725 bp
ATGGCCGAAGAATGCAGAGAAAGTACTTCTTGTGTTGCAATCTCTTCTTCCTCTCCACAGCTAGCACAACCAAACTGGTGGGATCTCCATGCAGCTGCAGGTGCAGGGGCAGCAGGCTCTCAGCTGTCTTCATGGAGCAACTTGGGTATCAACCCATGGCAGCCACAGCCGCCTCAGCAGCAGCCAAACCAGAAGTACTCCAACTCTTCTAATAATTGTGATGATGTTGACCAGGATGTTTCAATCTCCAGCACTTCCTTTACCAATGCCTCCAACCACTCAAGCCTTAGCGTTGACTCCTCTCGCAGACTGCAGGTTGCTGATCAGCGTTCTGCGTCTCCCAACAACGATATGATCAACGGAGAGCAGGTTTCTGACAATCATATTTGGAACCATGTTCTCTTGTTGAACCATGCATGCAGAAGCGTTAATGGAAACAGTGATTTACACCACAATGATCATGATGTTGGAGAGAATTTTCTCGATGCGCTGTCGTCCAAGAGCTTGTCAACTGATCATGTCATGTATGAACCTGCTTGTGACTACTTGAAGAAACTGGACAACAGTACTTGGGAGTTCACAAAGTACGTTTCAGCTGCATCGAATAATTTCAACAGTTTCGAGAAGCAATTAAATGGAGGGTTTATGGAGAACAACAACATGAATAATAATGTTAATATTGAGAACGAAAGGTTAACCAAGCTGTCAAATCTGGTGAGCACCTGGTCCATTGCGCCCCCCGAACCACAGCTAGTTATGGATCATGATCACCATCACTACTTGAAGCCGCAAGCGTTCATCAATAACGATTCGACTTCATGTGATGCTCAGATGGGAAATAATAATATTACAAATAGAAACTCGGGATCCAGTTTATTTTCATGTTATGGTAGCAAGGTTGAGGCTGCATGCGTAGCAGGAGGAGGAGGAGGAGGAGCTTTACATGGAATAACGCCGTCGTTTGGTAATAATACTAATGGCATTGAATATCAGATTGGCCTCAACAACGTTAACGCAATGGTTGCAGATCACCATAACGGCAAGTACTTTTATGGAAATGGATCAATTTTGCCCGATTCTTATTCTTCATGCGGTGCTACGAGTGCCGGTGCCAGAAATTTTGCAGATGTTATATCTTTTAGTAGCCGATTAGGCAACAAGTCGGCCTTGGTTGATATTCATGCACCCAAGCCCTGTTTCAAATCTTCCAACCTATCTGATCAATATTCTAAGAAGCAAGCTTCCTCGACAAGAGTGAGTAGTGGAAGAGGACAAGGGATTGCAAATGAAGGAAAGAAGAAAAGAACGGACGACACATCATCAGAAACAGTCTTGAAAAAGCCTAAGCAAGAAACTTCTACAGTTTCATCATCTGTAAAGATGCAGGCACCAAAAGTCAAGCTCGGAGACAGGATCACGGCCCTTCAACAAATCGTGTCTCCATTTGGAAAGACTGATACTGCATCTGTACTATATGAAGCGATTCAGTACATCAAGTTCCTGCAAGACCAAGTGCATGTGCTATTGAGTAGCCCTTATTTGAAGACAAATTCACACAAGGATCCATGGGCGACCGATAGAAAAGATCACAAGGGAGATGCAAAGGTTGACCTCAAGAACAAAGGCCTTTGCTTGGTGCCTATTTCATGCACACCTCAGGTTTATCGTGAGAATACAGGATCAGACTATTGGACACCAACATATAGAGGATGTTTGTATAGATAA

Protein Analysis

575

Amino Acids

62.63

Weight (kDa)

6.46

Isoelectric Point (pI)

40.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 89
Acc36I ACCTGC 4 cut(s) 89, 304, 358, 541
AccB1I GGYRCC 3 cut(s) 1109, 1387, 1636
AciI CCGC 3 cut(s) 170, 788, 1092
AclI AACGTT 1 cut(s) 1008
AclWI GGATC 9 cut(s) 90, 768, 861, 874, 1069, 1421, 1556, 1569, 1687
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 475, 1117, 1549
AfaI GTAC 7 cut(s) 25, 197, 568, 587, 1046, 1470, 1490
AfiI CCNNNNNNNGG 2 cut(s) 962, 1633
AjnI CCWGG 2 cut(s) 231, 722
AjuI GAANNNNNNNTTGG 4 cut(s) 978, 1010, 1181, 1213
Alw21I GWGCWC 1 cut(s) 722
Alw26I GTCTC 3 cut(s) 342, 1401, 1443
AlwI GGATC 9 cut(s) 90, 768, 861, 874, 1069, 1421, 1556, 1569, 1687
Ama87I CYCGRG 1 cut(s) 862
AoxI GGCC 5 cut(s) 3, 997, 1164, 1419, 1624
ApeKI GCWGC 8 cut(s) 92, 95, 110, 160, 178, 181, 596, 905
ApoI RAATTY 3 cut(s) 475, 1117, 1549
Asp700I GAANNNNTTC 2 cut(s) 608, 1482
AspLEI GCGC 2 cut(s) 490, 736
AspS9I GGNCC 2 cut(s) 726, 1420
AsuHPI GGTGA 3 cut(s) 727, 761, 1022
AsuNHI GCTAGC 1 cut(s) 61
AvaI CYCGRG 1 cut(s) 862
AvaII GGWCC 1 cut(s) 726
AxyI CCTNAGG 1 cut(s) 1656
BaeI ACNNNNGTAYC 2 cut(s) 130, 163
BamHI GGATCC 2 cut(s) 866, 1561
BanI GGYRCC 3 cut(s) 1109, 1387, 1636
BbsI GAAGAC 2 cut(s) 120, 1550
Bbv12I GWGCWC 1 cut(s) 722
BbvCI CCTCAGC 1 cut(s) 174
BbvI GCAGC 8 cut(s) 82, 104, 122, 172, 190, 193, 583, 892
BccI CCATC 2 cut(s) 780, 826
BceAI ACGGC 3 cut(s) 940, 1054, 1434
BciT130I CCWGG 2 cut(s) 233, 724
BclI TGATCA 6 cut(s) 322, 354, 457, 514, 766, 1219
BcoDI GTCTC 3 cut(s) 342, 1401, 1443
BfaI CTAG 2 cut(s) 62, 752
BfmI CTRYAG 3 cut(s) 96, 311, 1359
BfuAI ACCTGC 4 cut(s) 89, 304, 358, 541
BglI GCCNNNNNGGC 1 cut(s) 1152
BmcAI AGTACT 4 cut(s) 25, 197, 568, 1046
Bme1390I CCNGG 2 cut(s) 233, 724
Bme18I GGWCC 1 cut(s) 726
BmeT110I CYCGRG 1 cut(s) 862
BmgT120I GGNCC 2 cut(s) 726, 1420
BmiI GGNNCC 6 cut(s) 392, 868, 1111, 1389, 1563, 1638
BmrFI CCNGG 2 cut(s) 233, 724
BmsI GCATC 6 cut(s) 475, 608, 814, 1371, 1472, 1588
BmtI GCTAGC 1 cut(s) 65
BpiI GAAGAC 2 cut(s) 120, 1550
BpmI CTGGAG 1 cut(s) 232
Bpu10I CCTNAGC 3 cut(s) 174, 287, 1344
BpuEI CTTGAG 2 cut(s) 265, 1598
BsaBI GATNNNNATC 2 cut(s) 765, 771
BsaJI CCNNGG 3 cut(s) 155, 1167, 1565
BsaXI ACNNNNNCTCC 2 cut(s) 354, 384
Bsc4I CCNNNNNNNGG 2 cut(s) 962, 1633
Bse118I RCCGGY 1 cut(s) 1106
Bse1I ACTGG 3 cut(s) 80, 561, 870
Bse21I CCTNAGG 1 cut(s) 1656
Bse3DI GCAATG 2 cut(s) 729, 1023
Bse8I GATNNNNATC 2 cut(s) 765, 771
BseBI CCWGG 2 cut(s) 233, 724
BseDI CCNNGG 3 cut(s) 155, 1167, 1565
BseGI GGATG 2 cut(s) 241, 1715
BseJI GATNNNNATC 2 cut(s) 765, 771
BseLI CCNNNNNNNGG 2 cut(s) 962, 1633
BseMI GCAATG 2 cut(s) 729, 1023
BseMII CTCAG 4 cut(s) 134, 188, 842, 1670
BseNI ACTGG 3 cut(s) 80, 561, 870
BseRI GAGGAG 6 cut(s) 289, 936, 939, 942, 945, 948
BseXI GCAGC 8 cut(s) 82, 104, 122, 172, 190, 193, 583, 892
BsgI GTGCAG 1 cut(s) 123
Bsh1285I CGRYCG 1 cut(s) 1575
BshFI GGCC 5 cut(s) 5, 999, 1166, 1421, 1626
BshNI GGYRCC 3 cut(s) 1109, 1387, 1636
BsiEI CGRYCG 1 cut(s) 1575
BsiHKAI GWGCWC 1 cut(s) 722
BsiHKCI CYCGRG 1 cut(s) 862
BsiSI CCGG 1 cut(s) 1107
BslI CCNNNNNNNGG 2 cut(s) 962, 1633
BsmAI GTCTC 3 cut(s) 342, 1401, 1443
BsmBI CGTCTC 1 cut(s) 342
BsmI GAATGC 1 cut(s) 17
BsnI GGCC 5 cut(s) 5, 999, 1166, 1421, 1626
BsoBI CYCGRG 1 cut(s) 862
Bsp1286I GDGCHC 1 cut(s) 722
Bsp19I CCATGG 2 cut(s) 155, 1565
BspACI CCGC 3 cut(s) 170, 788, 1092
BspANI GGCC 5 cut(s) 5, 999, 1166, 1421, 1626
BspCNI CTCAG 4 cut(s) 133, 187, 841, 1669
BspHI TCATGA 2 cut(s) 460, 763
BspLI GGNNCC 6 cut(s) 392, 868, 1111, 1389, 1563, 1638
BspMAI CTGCAG 2 cut(s) 100, 315
BspMI ACCTGC 4 cut(s) 89, 304, 358, 541
BspOI GCTAGC 1 cut(s) 65
BspPI GGATC 9 cut(s) 90, 768, 861, 874, 1069, 1421, 1556, 1569, 1687
BspT107I GGYRCC 3 cut(s) 1109, 1387, 1636
BsrDI GCAATG 2 cut(s) 729, 1023
BsrFI RCCGGY 1 cut(s) 1106
BsrI ACTGG 3 cut(s) 80, 561, 870
BssAI RCCGGY 1 cut(s) 1106
BssECI CCNNGG 3 cut(s) 155, 1167, 1565
BssT1I CCWWGG 3 cut(s) 155, 1167, 1565
Bst2UI CCWGG 2 cut(s) 233, 724
Bst4CI ACNGT 5 cut(s) 440, 566, 617, 1330, 1363
Bst6I CTCTTC 3 cut(s) 49, 211, 1261
BstAPI GCANNNNNTGC 1 cut(s) 1022
BstC8I GCNNGC 7 cut(s) 63, 115, 418, 792, 910, 1239, 1386
BstDEI CTNAG 7 cut(s) 120, 174, 287, 828, 1230, 1344, 1656
BstDSI CCRYGG 2 cut(s) 155, 1565
BstF5I GGATG 2 cut(s) 241, 1715
BstHHI GCGC 2 cut(s) 490, 736
BstMAI GTCTC 3 cut(s) 342, 1401, 1443
BstMCI CGRYCG 1 cut(s) 1575
BstNI CCWGG 2 cut(s) 233, 724
BstNSI RCATGY 3 cut(s) 420, 912, 1520
BstSCI CCNGG 2 cut(s) 231, 722
BstSFI CTRYAG 3 cut(s) 96, 311, 1359
BstV1I GCAGC 8 cut(s) 82, 104, 122, 172, 190, 193, 583, 892
BstV2I GAAGAC 2 cut(s) 120, 1550
BstX2I RGATCY 3 cut(s) 82, 866, 1561
BstXI CCANNNNNNTGG 1 cut(s) 78
BstYI RGATCY 3 cut(s) 82, 866, 1561
Bsu36I CCTNAGG 1 cut(s) 1656
BsuRI GGCC 5 cut(s) 5, 999, 1166, 1421, 1626
BtgI CCRYGG 2 cut(s) 155, 1565
BtsCI GGATG 2 cut(s) 241, 1715
BtsIMutI CAGTG 1 cut(s) 445
BveI ACCTGC 4 cut(s) 89, 304, 358, 541
Cac8I GCNNGC 7 cut(s) 63, 115, 418, 792, 910, 1239, 1386
CciI TCATGA 2 cut(s) 460, 763
CfoI GCGC 2 cut(s) 490, 736
Cfr10I RCCGGY 1 cut(s) 1106
Cfr13I GGNCC 2 cut(s) 726, 1420
CseI GACGC 1 cut(s) 324
CsiI ACCWGGT 1 cut(s) 722
Csp6I GTAC 7 cut(s) 24, 196, 567, 586, 1045, 1469, 1489
CviQI GTAC 7 cut(s) 24, 196, 567, 586, 1045, 1469, 1489
DdeI CTNAG 7 cut(s) 120, 174, 287, 828, 1230, 1344, 1656
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 49, 211, 1261
EarI CTCTTC 3 cut(s) 49, 211, 1261
Eco130I CCWWGG 3 cut(s) 155, 1167, 1565
Eco147I AGGCCT 1 cut(s) 1626
Eco47I GGWCC 1 cut(s) 726
Eco81I CCTNAGG 1 cut(s) 1656
Eco88I CYCGRG 1 cut(s) 862
EcoRII CCWGG 2 cut(s) 231, 722
EcoT14I CCWWGG 3 cut(s) 155, 1167, 1565
EcoT22I ATGCAT 1 cut(s) 418
ErhI CCWWGG 3 cut(s) 155, 1167, 1565
Esp3I CGTCTC 1 cut(s) 342
FalI AAGNNNNNCTT 4 cut(s) 13, 45, 1151, 1183
FbaI TGATCA 6 cut(s) 322, 354, 457, 514, 766, 1219
FokI GGATG 1 cut(s) 248
FspBI CTAG 2 cut(s) 62, 752
GlaI GCGC 2 cut(s) 489, 735
GsuI CTGGAG 1 cut(s) 232
HaeIII GGCC 5 cut(s) 5, 999, 1166, 1421, 1626
HapII CCGG 1 cut(s) 1107
HgaI GACGC 1 cut(s) 324
HhaI GCGC 2 cut(s) 490, 736
Hin6I GCGC 2 cut(s) 488, 734
HinP1I GCGC 2 cut(s) 488, 734
HincII GTYRAC 6 cut(s) 229, 295, 510, 696, 1012, 1609
HindII GTYRAC 6 cut(s) 229, 295, 510, 696, 1012, 1609
HindIII AAGCTT 1 cut(s) 1239
HinfI GANTC 4 cut(s) 296, 809, 1076, 1483
HpaI GTTAAC 2 cut(s) 696, 1012
HpaII CCGG 1 cut(s) 1107
HphI GGTGA 3 cut(s) 727, 761, 1022
Hpy166II GTNNAC 7 cut(s) 229, 295, 510, 579, 696, 1012, 1609
Hpy188I TCNGA 7 cut(s) 376, 831, 993, 1219, 1324, 1406, 1684
Hpy188III TCNNGA 8 cut(s) 461, 482, 622, 764, 864, 1333, 1615, 1667
Hpy8I GTNNAC 7 cut(s) 229, 295, 510, 579, 696, 1012, 1609
Hpy99I CGWCG 1 cut(s) 961
HpyAV CCTTC 2 cut(s) 1283, 1433
HpyCH4III ACNGT 5 cut(s) 440, 566, 617, 1330, 1363
HpyCH4IV ACGT 2 cut(s) 588, 1008
HpyF3I CTNAG 7 cut(s) 120, 174, 287, 828, 1230, 1344, 1656
HpySE526I ACGT 2 cut(s) 588, 1008
HspAI GCGC 2 cut(s) 488, 734
Ksp22I TGATCA 6 cut(s) 322, 354, 457, 514, 766, 1219
KspAI GTTAAC 2 cut(s) 696, 1012
LmnI GCTCC 2 cut(s) 135, 935
Lsp1109I GCAGC 8 cut(s) 82, 104, 122, 172, 190, 193, 583, 892
LweI GCATC 6 cut(s) 475, 608, 814, 1371, 1472, 1588
MabI ACCWGGT 1 cut(s) 722
MaeI CTAG 2 cut(s) 62, 752
MaeII ACGT 2 cut(s) 588, 1008
MaeIII GTNAC 1 cut(s) 539
MflI RGATCY 3 cut(s) 82, 866, 1561
MhlI GDGCHC 1 cut(s) 722
MluCI AATT 7 cut(s) 214, 475, 607, 629, 1065, 1117, 1549
MlyI GAGTC 1 cut(s) 290
MmeI TCCRAC 4 cut(s) 225, 297, 448, 1233
Mph1103I ATGCAT 1 cut(s) 418
MroXI GAANNNNTTC 2 cut(s) 608, 1482
MseI TTAA 5 cut(s) 429, 632, 675, 695, 1011
MslI CAYNNNNRTG 1 cut(s) 453
MspA1I CMGCKG 3 cut(s) 95, 124, 596
MspI CCGG 1 cut(s) 1107
MspR9I CCNGG 2 cut(s) 233, 724
Mva1269I GAATGC 1 cut(s) 17
MvaI CCWGG 2 cut(s) 233, 724
NcoI CCATGG 2 cut(s) 155, 1565
NheI GCTAGC 1 cut(s) 61
NlaIV GGNNCC 6 cut(s) 392, 868, 1111, 1389, 1563, 1638
NmuCI GTSAC 1 cut(s) 539
NsiI ATGCAT 1 cut(s) 418
NspI RCATGY 3 cut(s) 420, 912, 1520
PaeI GCATGC 2 cut(s) 420, 912
PagI TCATGA 2 cut(s) 460, 763
PaqCI CACCTGC 1 cut(s) 89
PceI AGGCCT 1 cut(s) 1626
PctI GAATGC 1 cut(s) 17
PdmI GAANNNNTTC 2 cut(s) 608, 1482
PfeI GAWTC 3 cut(s) 809, 1076, 1483
PleI GAGTC 1 cut(s) 290
PpsI GAGTC 1 cut(s) 290
Psp1406I AACGTT 1 cut(s) 1008
Psp6I CCWGG 2 cut(s) 231, 722
PspGI CCWGG 2 cut(s) 231, 722
PspN4I GGNNCC 6 cut(s) 392, 868, 1111, 1389, 1563, 1638
PspPI GGNCC 2 cut(s) 726, 1420
PsrI GAACNNNNNNTAC 2 cut(s) 1481, 1513
PstI CTGCAG 2 cut(s) 100, 315
PsuI RGATCY 3 cut(s) 82, 866, 1561
PvuII CAGCTG 3 cut(s) 95, 124, 596
RsaI GTAC 7 cut(s) 25, 197, 568, 587, 1046, 1470, 1490
RsaNI GTAC 7 cut(s) 24, 196, 567, 586, 1045, 1469, 1489
RseI CAYNNNNRTG 1 cut(s) 453
SaqAI TTAA 5 cut(s) 429, 632, 675, 695, 1011
Sau96I GGNCC 2 cut(s) 726, 1420
ScaI AGTACT 4 cut(s) 25, 197, 568, 1046
SchI GAGTC 1 cut(s) 290
ScrFI CCNGG 2 cut(s) 233, 724
SduI GDGCHC 1 cut(s) 722
SexAI ACCWGGT 1 cut(s) 722
SfaNI GCATC 6 cut(s) 475, 608, 814, 1371, 1472, 1588
SfcI CTRYAG 3 cut(s) 96, 311, 1359
SinI GGWCC 1 cut(s) 726
SmiMI CAYNNNNRTG 1 cut(s) 453
SmlI CTYRAG 2 cut(s) 280, 1613
SmoI CTYRAG 2 cut(s) 280, 1613
SphI GCATGC 2 cut(s) 420, 912
Sse9I AATT 7 cut(s) 214, 475, 607, 629, 1065, 1117, 1549
SseBI AGGCCT 1 cut(s) 1626
SsiI CCGC 3 cut(s) 170, 788, 1092
SspI AATATT 3 cut(s) 679, 847, 1226
SspMI CTAG 2 cut(s) 62, 752
StuI AGGCCT 1 cut(s) 1626
StyD4I CCNGG 2 cut(s) 231, 722
StyI CCWWGG 3 cut(s) 155, 1167, 1565
TaaI ACNGT 5 cut(s) 440, 566, 617, 1330, 1363
TaiI ACGT 2 cut(s) 591, 1011
TaqI TCGA 5 cut(s) 483, 602, 621, 812, 1247
TaqII GACCGA 1 cut(s) 1589
TasI AATT 7 cut(s) 214, 475, 607, 629, 1065, 1117, 1549
TatI WGTACW 6 cut(s) 23, 195, 566, 1044, 1468, 1488
TauI GCSGC 2 cut(s) 172, 790
TfiI GAWTC 3 cut(s) 809, 1076, 1483
Tru1I TTAA 5 cut(s) 429, 632, 675, 695, 1011
Tru9I TTAA 5 cut(s) 429, 632, 675, 695, 1011
TscAI CASTG 1 cut(s) 445
TseFI GTSAC 1 cut(s) 539
TseI GCWGC 8 cut(s) 92, 95, 110, 160, 178, 181, 596, 905
Tsp45I GTSAC 1 cut(s) 539
TspGWI ACGGA 2 cut(s) 375, 1322
TspRI CASTG 1 cut(s) 445
VpaK11BI GGWCC 1 cut(s) 726
XapI RAATTY 3 cut(s) 475, 1117, 1549
XceI RCATGY 3 cut(s) 420, 912, 1520
XmnI GAANNNNTTC 2 cut(s) 608, 1482
XspI CTAG 2 cut(s) 62, 752
ZrmI AGTACT 4 cut(s) 25, 197, 568, 1046
Zsp2I ATGCAT 1 cut(s) 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.