Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0004404

Physical Location & Seq

Genomic Coordinates Reverse (-)

72207799 .. 72211184

Gene Structure 3386 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG425700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGACTCATGATGTAGGAGAGAACTTCCTTGATGCACTATCATCCAAGAACTTGTCAAATACTGCTATGTACGAACCTGCTTGTGATTACTTGAAGAAATTGGACAACGACAGTAGCAATTGGGAGTTCACAAACTCATCATCAGCTGCAGCTACTATGCATGCATCTAATCTCAACAATTTCGAAAGGCAAATCAACATTAATGGATCGTTTAGCAGCGAGAACTTGTCTAATCTAGTCAGCACCTGGTCCATTGCGCCACCTGAACCACAAGTAGCCAATAGCCCTTTCTTCAATCTTCCTCAAGTGTCATGTTACGGTGCTAATAATAATTTGATGAAAGTTGAAAGTGCTGCACAATTAGCTGGAGCAAACTTGCATGGAAGGCCATTTAGTTCTGATAATGGGAGCAATATTGACTATCAGATTGGCCACAACAACACAATGGCTGCAGATAATAGCTACTATGGATCCGGAAATGGTTTAGTGATGCCCGATTCGTACTCTTCATCCAACAGTGCTAGAAATTTCACAGATGTCATATCTTTTAACAGTCGATTAGGCAAGCCGTTGATGGATCATAGTCACCATGCACAAAAGCCGAGTAACTTCAAATCTTTGATCAACTTATCTGATAACATTTCAAAGAAGCAAGGCCTCCAAACTTCTTCGCCGACAAGAATGAGTGGAAGAGGACAAGGAACTGCAAATGAATCCGCAGGGAAGAAGAAACGAACAGATGAGAGTAGTACATCATCAGAAATAGTTTTGAAAAAGCCTAAGCAAGAAACTTCAGCAGTTAATTCATCATCATCTGTAAAGATGCAGGCACCAAAAGTCAAGGTTGCTGATAAGATCACGGCCCTTCAACAAATCGTGTCTCCATTTGGAAAGACTGATACAGCTTCAGTACTATATGAAGCGATTCAGTACATTAAGTTCCTCCAAGACCAAGTACAGGTGCTATTGAGTAGCCCTTATTTGAAGACAAATCCGCATAAGCAGGATCCATGGGGAAAATTGGATCAAATTAGGGGAGATCATCACCCAAAGGTGGATCTGAAGAGCAGAGGCCTATGCTTGGTGCCTACGTCATGTACGCCCCCGGTTTATCGTGAAAATACAGGATCAGACTACTGGACACCAACATACAGAGGCTGTTTGTATAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

390

Amino Acids

42.73

Weight (kDa)

8.62

Isoelectric Point (pI)

40.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31050 AT1G31050 AT1G31050 AT1G31050 AT1G31050 AT1G31050 AT1G31050 AT1G31050
fragaria_vesca	FvH4_4g36070 FvH4_4g36070 FvH4_4g36070 FvH4_4g36070 FvH4_4g36070 FvH4_4g36070 FvH4_4g36070 FvH4_4g36070 FvH4_4g36070
malus_domestica	MD13G1012600.v1.1 MD16G1009300.v1.1
prunus_persica	Prupe.1G341300_v2.0.a1 Prupe.1G341300_v2.0.a1 Prupe.1G341300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0445691
rosa_laevigata	RLG00000005716
rosa_roxburghii	Rroxscaffold_5G00386180
rosa_rugosa	Rorug04G0364700 Rorug04G0364800 Rorug04G0364900
rosa_samantha	Rh4AG425700 Rh4CG452800 Rh4DG434000
rosa_wichuraiana	Rw4G036470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	85
AccB1I	GGYRCC	2 cut(s)	829, 1084
AccIII	TCCGGA	1 cut(s)	473
AciI	CCGC	2 cut(s)	717, 995
AclWI	GGATC	9 cut(s)	214, 465, 478, 585, 1001, 1014, 1032, 1065, 1135
AcoI	YGGCCR	1 cut(s)	430
AcsI	RAATTY	1 cut(s)	526
AcuI	CTGAAG	3 cut(s)	777, 891, 1082
AfaI	GTAC	7 cut(s)	71, 503, 751, 912, 932, 957, 1099
AfiI	CCNNNNNNNGG	3 cut(s)	958, 1054, 1081
AgsI	TTSAA	8 cut(s)	94, 295, 347, 613, 645, 772, 869, 985
AjnI	CCWGG	1 cut(s)	245
AjuI	GAANNNNNNNTTGG	2 cut(s)	272, 304
AluBI	AGCT	5 cut(s)	146, 152, 365, 462, 905
AluI	AGCT	5 cut(s)	146, 152, 365, 462, 905
Alw26I	GTCTC	1 cut(s)	885
AlwI	GGATC	9 cut(s)	214, 465, 478, 585, 1001, 1014, 1032, 1065, 1135
AlwNI	CAGNNNCTG	2 cut(s)	246, 1158
Aor13HI	TCCGGA	1 cut(s)	473
AoxI	GGCC	5 cut(s)	386, 430, 655, 861, 1072
ApeKI	GCWGC	5 cut(s)	146, 149, 216, 353, 449
ApoI	RAATTY	1 cut(s)	526
AseI	ATTAAT	1 cut(s)	201
Asp700I	GAANNNNTTC	1 cut(s)	924
AspLEI	GCGC	1 cut(s)	259
AspS9I	GGNCC	2 cut(s)	249, 862
AsuC2I	CCSGG	1 cut(s)	1106
AsuHPI	GGTGA	2 cut(s)	578, 1037
AsuII	TTCGAA	1 cut(s)	183
AvaII	GGWCC	1 cut(s)	249
BalI	TGGCCA	1 cut(s)	432
BamHI	GGATCC	2 cut(s)	470, 1006
BanI	GGYRCC	2 cut(s)	829, 1084
BbsI	GAAGAC	1 cut(s)	992
BbvI	GCAGC	5 cut(s)	133, 161, 228, 340, 436
BccI	CCATC	1 cut(s)	568
BceAI	ACGGC	2 cut(s)	553, 876
BciT130I	CCWGG	1 cut(s)	247
BclI	TGATCA	1 cut(s)	621
BcnI	CCSGG	1 cut(s)	1106
BcoDI	GTCTC	1 cut(s)	885
BfaI	CTAG	2 cut(s)	236, 522
BfmI	CTRYAG	2 cut(s)	147, 450
BfuAI	ACCTGC	1 cut(s)	85
BisI	GCNGC	5 cut(s)	147, 150, 217, 354, 450
BlsI	GCNGC	5 cut(s)	148, 151, 218, 355, 451
BmcAI	AGTACT	1 cut(s)	912
Bme1390I	CCNGG	2 cut(s)	247, 1106
Bme18I	GGWCC	1 cut(s)	249
BmgT120I	GGNCC	2 cut(s)	249, 862
BmiI	GGNNCC	4 cut(s)	472, 831, 1008, 1086
BmrFI	CCNGG	2 cut(s)	247, 1106
BmsI	GCATC	4 cut(s)	22, 173, 480, 813
BpiI	GAAGAC	1 cut(s)	992
BpmI	CTGGAG	1 cut(s)	387
Bpu10I	CCTNAGC	1 cut(s)	780
Bpu14I	TTCGAA	1 cut(s)	183
BpuEI	CTTGAG	1 cut(s)	288
BpuMI	CCSGG	1 cut(s)	1106
BsaJI	CCNNGG	2 cut(s)	1010, 1104
BsaWI	WCCGGW	1 cut(s)	473
Bsc4I	CCNNNNNNNGG	3 cut(s)	958, 1054, 1081
Bse1I	ACTGG	1 cut(s)	1142
Bse3DI	GCAATG	1 cut(s)	252
BseAI	TCCGGA	1 cut(s)	473
BseBI	CCWGG	1 cut(s)	247
BseDI	CCNNGG	2 cut(s)	1010, 1104
BseGI	GGATG	2 cut(s)	41, 509
BseLI	CCNNNNNNNGG	3 cut(s)	958, 1054, 1081
BseMI	GCAATG	1 cut(s)	252
BseNI	ACTGG	1 cut(s)	1142
BseXI	GCAGC	5 cut(s)	133, 161, 228, 340, 436
BsgI	GTGCAG	1 cut(s)	339
BshFI	GGCC	5 cut(s)	388, 432, 657, 863, 1074
BshNI	GGYRCC	2 cut(s)	829, 1084
BsiSI	CCGG	2 cut(s)	474, 1106
BslI	CCNNNNNNNGG	3 cut(s)	958, 1054, 1081
BsmAI	GTCTC	1 cut(s)	885
BsnI	GGCC	5 cut(s)	388, 432, 657, 863, 1074
Bsp119I	TTCGAA	1 cut(s)	183
Bsp13I	TCCGGA	1 cut(s)	473
Bsp19I	CCATGG	1 cut(s)	1010
BspACI	CCGC	2 cut(s)	717, 995
BspANI	GGCC	5 cut(s)	388, 432, 657, 863, 1074
BspEI	TCCGGA	1 cut(s)	473
BspHI	TCATGA	1 cut(s)	7
BspLI	GGNNCC	4 cut(s)	472, 831, 1008, 1086
BspMAI	CTGCAG	2 cut(s)	151, 454
BspMI	ACCTGC	1 cut(s)	85
BspPI	GGATC	9 cut(s)	214, 465, 478, 585, 1001, 1014, 1032, 1065, 1135
BspQI	GCTCTTC	1 cut(s)	1058
BspT104I	TTCGAA	1 cut(s)	183
BspT107I	GGYRCC	2 cut(s)	829, 1084
BsrDI	GCAATG	1 cut(s)	252
BsrI	ACTGG	1 cut(s)	1142
BssECI	CCNNGG	2 cut(s)	1010, 1104
BssT1I	CCWWGG	1 cut(s)	1010
Bst2UI	CCWGG	1 cut(s)	247
Bst4CI	ACNGT	4 cut(s)	113, 320, 518, 554
Bst6I	CTCTTC	3 cut(s)	511, 685, 1058
BstBI	TTCGAA	1 cut(s)	183
BstC8I	GCNNGC	3 cut(s)	162, 566, 828
BstDEI	CTNAG	1 cut(s)	780
BstDSI	CCRYGG	1 cut(s)	1010
BstF5I	GGATG	2 cut(s)	41, 509
BstHHI	GCGC	1 cut(s)	259
BstMAI	GTCTC	1 cut(s)	885
BstMWI	GCNNNNNNNGC	2 cut(s)	362, 385
BstNI	CCWGG	1 cut(s)	247
BstNSI	RCATGY	1 cut(s)	164
BstSCI	CCNGG	2 cut(s)	245, 1104
BstSFI	CTRYAG	2 cut(s)	147, 450
BstV1I	GCAGC	5 cut(s)	133, 161, 228, 340, 436
BstV2I	GAAGAC	1 cut(s)	992
BstX2I	RGATCY	3 cut(s)	470, 1006, 1057
BstYI	RGATCY	3 cut(s)	470, 1006, 1057
BsuRI	GGCC	5 cut(s)	388, 432, 657, 863, 1074
BtgI	CCRYGG	1 cut(s)	1010
BtsCI	GGATG	2 cut(s)	41, 509
BtsIMutI	CAGTG	1 cut(s)	523
BveI	ACCTGC	1 cut(s)	85
Cac8I	GCNNGC	3 cut(s)	162, 566, 828
CaiI	CAGNNNCTG	2 cut(s)	246, 1158
CciI	TCATGA	1 cut(s)	7
CfoI	GCGC	1 cut(s)	259
Cfr13I	GGNCC	2 cut(s)	249, 862
CsiI	ACCWGGT	1 cut(s)	245
Csp6I	GTAC	7 cut(s)	70, 502, 750, 911, 931, 956, 1098
CviAII	CATG	7 cut(s)	8, 161, 312, 380, 590, 1011, 1095
CviQI	GTAC	7 cut(s)	70, 502, 750, 911, 931, 956, 1098
DdeI	CTNAG	1 cut(s)	780
EaeI	YGGCCR	1 cut(s)	430
Eam1104I	CTCTTC	3 cut(s)	511, 685, 1058
EarI	CTCTTC	3 cut(s)	511, 685, 1058
Eco130I	CCWWGG	1 cut(s)	1010
Eco147I	AGGCCT	2 cut(s)	657, 1074
Eco47I	GGWCC	1 cut(s)	249
Eco57I	CTGAAG	3 cut(s)	777, 891, 1082
EcoRII	CCWGG	1 cut(s)	245
EcoT14I	CCWWGG	1 cut(s)	1010
EcoT22I	ATGCAT	2 cut(s)	162, 166
ErhI	CCWWGG	1 cut(s)	1010
FaeI	CATG	7 cut(s)	11, 164, 315, 383, 593, 1014, 1098
FatI	CATG	7 cut(s)	7, 160, 311, 379, 589, 1010, 1094
FbaI	TGATCA	1 cut(s)	621
Fnu4HI	GCNGC	5 cut(s)	147, 150, 217, 354, 450
FokI	GGATG	2 cut(s)	28, 496
Fsp4HI	GCNGC	5 cut(s)	147, 150, 217, 354, 450
FspBI	CTAG	2 cut(s)	236, 522
GlaI	GCGC	1 cut(s)	258
GluI	GCNGC	5 cut(s)	147, 150, 217, 354, 450
GsuI	CTGGAG	1 cut(s)	387
HaeIII	GGCC	5 cut(s)	388, 432, 657, 863, 1074
HapII	CCGG	2 cut(s)	474, 1106
HhaI	GCGC	1 cut(s)	259
Hin1II	CATG	7 cut(s)	11, 164, 315, 383, 593, 1014, 1098
Hin6I	GCGC	1 cut(s)	257
HinP1I	GCGC	1 cut(s)	257
HinfI	GANTC	4 cut(s)	4, 497, 713, 925
HpaII	CCGG	2 cut(s)	474, 1106
HphI	GGTGA	2 cut(s)	578, 1037
Hpy166II	GTNNAC	1 cut(s)	129
Hpy188I	TCNGA	6 cut(s)	400, 426, 634, 760, 1062, 1132
Hpy188III	TCNNGA	3 cut(s)	8, 474, 1115
Hpy8I	GTNNAC	1 cut(s)	129
HpyAV	CCTTC	2 cut(s)	378, 875
HpyCH4III	ACNGT	4 cut(s)	113, 320, 518, 554
HpyCH4IV	ACGT	1 cut(s)	1091
HpyF10VI	GCNNNNNNNGC	2 cut(s)	362, 385
HpyF3I	CTNAG	1 cut(s)	780
HpySE526I	ACGT	1 cut(s)	1091
Hsp92II	CATG	7 cut(s)	11, 164, 315, 383, 593, 1014, 1098
HspAI	GCGC	1 cut(s)	257
Kpn2I	TCCGGA	1 cut(s)	473
Ksp22I	TGATCA	1 cut(s)	621
LguI	GCTCTTC	1 cut(s)	1058
LmnI	GCTCC	2 cut(s)	368, 408
Lsp1109I	GCAGC	5 cut(s)	133, 161, 228, 340, 436
LweI	GCATC	4 cut(s)	22, 173, 480, 813
MabI	ACCWGGT	1 cut(s)	245
MaeI	CTAG	2 cut(s)	236, 522
MaeII	ACGT	1 cut(s)	1091
MaeIII	GTNAC	3 cut(s)	314, 584, 605
MfeI	CAATTG	1 cut(s)	118
MflI	RGATCY	3 cut(s)	470, 1006, 1057
MlsI	TGGCCA	1 cut(s)	432
MluCI	AATT	9 cut(s)	98, 118, 178, 331, 359, 526, 802, 1019, 1029
MluNI	TGGCCA	1 cut(s)	432
MmeI	TCCRAC	1 cut(s)	537
MnlI	CCTC	6 cut(s)	312, 668, 686, 953, 1064, 1148
Mox20I	TGGCCA	1 cut(s)	432
Mph1103I	ATGCAT	2 cut(s)	162, 166
MroI	TCCGGA	1 cut(s)	473
MroXI	GAANNNNTTC	1 cut(s)	924
MscI	TGGCCA	1 cut(s)	432
MseI	TTAA	4 cut(s)	201, 549, 801, 936
Msp20I	TGGCCA	1 cut(s)	432
MspA1I	CMGCKG	1 cut(s)	146
MspI	CCGG	2 cut(s)	474, 1106
MspR9I	CCNGG	2 cut(s)	247, 1106
MunI	CAATTG	1 cut(s)	118
MvaI	CCWGG	1 cut(s)	247
MwoI	GCNNNNNNNGC	2 cut(s)	362, 385
NciI	CCSGG	1 cut(s)	1106
NcoI	CCATGG	1 cut(s)	1010
NlaIII	CATG	7 cut(s)	11, 164, 315, 383, 593, 1014, 1098
NlaIV	GGNNCC	4 cut(s)	472, 831, 1008, 1086
NmeAIII	GCCGAG	1 cut(s)	627
NmuCI	GTSAC	1 cut(s)	584
NsiI	ATGCAT	2 cut(s)	162, 166
NspI	RCATGY	1 cut(s)	164
NspV	TTCGAA	1 cut(s)	183
PaeI	GCATGC	1 cut(s)	164
PagI	TCATGA	1 cut(s)	7
PceI	AGGCCT	2 cut(s)	657, 1074
PciSI	GCTCTTC	1 cut(s)	1058
PdmI	GAANNNNTTC	1 cut(s)	924
PfeI	GAWTC	3 cut(s)	497, 713, 925
PkrI	GCNGC	5 cut(s)	148, 151, 218, 355, 451
PshBI	ATTAAT	1 cut(s)	201
Psp6I	CCWGG	1 cut(s)	245
PspGI	CCWGG	1 cut(s)	245
PspN4I	GGNNCC	4 cut(s)	472, 831, 1008, 1086
PspPI	GGNCC	2 cut(s)	249, 862
PsrI	GAACNNNNNNTAC	2 cut(s)	923, 955
PstI	CTGCAG	2 cut(s)	151, 454
PstNI	CAGNNNCTG	2 cut(s)	246, 1158
PsuI	RGATCY	3 cut(s)	470, 1006, 1057
PvuII	CAGCTG	1 cut(s)	146
RsaI	GTAC	7 cut(s)	71, 503, 751, 912, 932, 957, 1099
RsaNI	GTAC	7 cut(s)	70, 502, 750, 911, 931, 956, 1098
SapI	GCTCTTC	1 cut(s)	1058
SaqAI	TTAA	4 cut(s)	201, 549, 801, 936
SatI	GCNGC	5 cut(s)	147, 150, 217, 354, 450
Sau96I	GGNCC	2 cut(s)	249, 862
ScaI	AGTACT	1 cut(s)	912
ScrFI	CCNGG	2 cut(s)	247, 1106
SexAI	ACCWGGT	1 cut(s)	245
SfaNI	GCATC	4 cut(s)	22, 173, 480, 813
SfcI	CTRYAG	2 cut(s)	147, 450
SfuI	TTCGAA	1 cut(s)	183
SinI	GGWCC	1 cut(s)	249
SmlI	CTYRAG	1 cut(s)	303
SmoI	CTYRAG	1 cut(s)	303
SphI	GCATGC	1 cut(s)	164
Sse9I	AATT	9 cut(s)	98, 118, 178, 331, 359, 526, 802, 1019, 1029
SseBI	AGGCCT	2 cut(s)	657, 1074
SsiI	CCGC	2 cut(s)	717, 995
SspI	AATATT	1 cut(s)	415
SspMI	CTAG	2 cut(s)	236, 522
StuI	AGGCCT	2 cut(s)	657, 1074
StyD4I	CCNGG	2 cut(s)	245, 1104
StyI	CCWWGG	1 cut(s)	1010
TaaI	ACNGT	4 cut(s)	113, 320, 518, 554
TaiI	ACGT	1 cut(s)	1094
TaqI	TCGA	2 cut(s)	183, 556
TasI	AATT	9 cut(s)	98, 118, 178, 331, 359, 526, 802, 1019, 1029
TatI	WGTACW	4 cut(s)	749, 910, 930, 955
TfiI	GAWTC	3 cut(s)	497, 713, 925
Tru1I	TTAA	4 cut(s)	201, 549, 801, 936
Tru9I	TTAA	4 cut(s)	201, 549, 801, 936
TscAI	CASTG	1 cut(s)	523
TseFI	GTSAC	1 cut(s)	584
TseI	GCWGC	5 cut(s)	146, 149, 216, 353, 449
Tsp45I	GTSAC	1 cut(s)	584
TspDTI	ATGAA	5 cut(s)	353, 498, 726, 795, 933
TspRI	CASTG	1 cut(s)	523
VpaK11BI	GGWCC	1 cut(s)	249
VspI	ATTAAT	1 cut(s)	201
XapI	RAATTY	1 cut(s)	526
XceI	RCATGY	1 cut(s)	164
XmnI	GAANNNNTTC	1 cut(s)	924
XspI	CTAG	2 cut(s)	236, 522
ZrmI	AGTACT	1 cut(s)	912
Zsp2I	ATGCAT	2 cut(s)	162, 166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.