Rw4G036470

helix loop helix domain

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
63289091 .. 63292056
2966 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G036470.1

Sequence Viewer

Length: 1572 bp
ATGGCAGCTGCTGACCAATGCCGACTCGACAATACTGGAAATTGTGTTGCCATCTCTTCCTCTACACAACCAAACTGGTGGGATCATGATCACCTCCATGCAGCAGCTGCAGCTGCCGCTGCCGGCTCTCATCTCTCGGCTTCTTCGTGGCCGTGGCAGCAGCAGCAGCCAAACCCTAACTCCAACTCTTCTTGCGATGAGGATGTTTCAATGTCCAGTACTTCCTTTACCAATACCTCCAACCATTCCAGCCTCAGCGTTGATTCCTCTCGCAGACTCGTTGATCAGCGTTCTGCTTCGCCCAACGACGACATGAATAATATTGGAGAACAGGTTTCTGATAATCAAATATGGAGACAAGTTCTATTAAGCGTCGGAAACAATGATTTGAACAGCAGTATGACTCATGATGTAGGAGAGAACTTCCTTGATGCACTATCATCCAAGAACTTGTCAAATACTGCTATGTACGAACCTGCTTGTGATTACTTGAAGAAATTGGACAACGATAGTAGCAATTGGGAGTTCACAAACTCATCATCAGCTGCAGCTACTATGCATGCATCTAATCTCAACAATTTCGAAAGGCAAATCAACATTAATGGATCGTTTAGCAGCGAGAACTTGTCTAATCTAGTCAGCACCTGGTCCATTGCGCCACCTGAACCACAAGTAGCCAATAGCCCTTTCTTCAATCTTCCTCAAGTGTCATGTTACGGTGCTAATAATAATTTGATGAAAGTTGAAAGTGCTGCACAATTAGCTGGAGCAAACTTGCATGGAAGGCCATTTAGTGCTGATAATGGGAGCAATATTGACTATCAGATTGGCCACAACAACACAATGGCTGCAGATAATAGCTACTATGGATCCGGAAATGGTTTAGTGATGCCCGATTCGTACTCTTCATCCAACAGTGCTAGAAATTTCACAGATGTCATATCTTTTAACAGTCGATTAGGCAAGCCGTTGATGGATCATAGTCACCATGCACAAAAGCCGAGTAACTTCAAATCTTTGATCAACTTATCTGATAACACTTCAAAGAAGCAAGGCCTCCAAACTTCTTCGCCGACAAGAATGAGTGGAAGAGGACAAGGAACTGCAAATGAATCCGCAGGGAAGAAGAAACGAACAGATGAGAGTAGTACATCATCAGAAATAGTTTTGAAAAAGCCTAAGCAAGAAACTTCAGCAGTTAATTCATCATCATCTGTAAAGATGCAGGCACCAAAAGTCAAGGTTGCTGATAAGATCACGGCCCTTCAACAAATCGTGTCTCCATTTGGAAAGACTGATACAGCTTCAGTACTATATGAAGCGATTCAGTACATTAAGTTCCTCCAAGACCAAGTACAGGTGCTATTGAGTAGCCCTTATTTGAAGACAAATCCGCATAAGCAGGATCCATGGGGAAAATTGGATCAAATTAGGGGAGATCATCACCCAAAGGTGGATCTGAAGAGCAGAGGCCTATGCTTGGTGCCTACGTCATGTACGCCCCCGGTTTATCGTGAAAATACAGGATCAGACTACTGGACACCAACATACAGAGGCTGTTTGTATAGATAA

Protein Analysis

523

Amino Acids

57.0

Weight (kDa)

6.31

Isoelectric Point (pI)

40.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 484
AccB1I GGYRCC 2 cut(s) 1228, 1483
AccIII TCCGGA 1 cut(s) 872
AciI CCGC 3 cut(s) 117, 1116, 1394
AcoI YGGCCR 2 cut(s) 149, 829
AcsI RAATTY 1 cut(s) 925
AcuI CTGAAG 3 cut(s) 1176, 1290, 1481
AfaI GTAC 8 cut(s) 220, 470, 902, 1150, 1311, 1331, 1356, 1498
AfiI CCNNNNNNNGG 3 cut(s) 1357, 1453, 1480
AjnI CCWGG 1 cut(s) 644
AjuI GAANNNNNNNTTGG 2 cut(s) 671, 703
AluBI AGCT 8 cut(s) 8, 107, 113, 545, 551, 764, 861, 1304
AluI AGCT 8 cut(s) 8, 107, 113, 545, 551, 764, 861, 1304
Alw26I GTCTC 2 cut(s) 349, 1284
AlwNI CAGNNNCTG 4 cut(s) 11, 107, 645, 1557
Aor13HI TCCGGA 1 cut(s) 872
AoxI GGCC 6 cut(s) 149, 785, 829, 1054, 1260, 1471
ApoI RAATTY 1 cut(s) 925
AseI ATTAAT 1 cut(s) 600
Asp700I GAANNNNTTC 1 cut(s) 1323
AspLEI GCGC 1 cut(s) 658
AspS9I GGNCC 2 cut(s) 648, 1261
AsuC2I CCSGG 1 cut(s) 1505
AsuHPI GGTGA 3 cut(s) 83, 977, 1436
AsuII TTCGAA 1 cut(s) 582
AvaII GGWCC 1 cut(s) 648
BalI TGGCCA 1 cut(s) 831
BamHI GGATCC 2 cut(s) 869, 1405
BanI GGYRCC 2 cut(s) 1228, 1483
BbsI GAAGAC 1 cut(s) 1391
BbvCI CCTCAGC 1 cut(s) 254
BccI CCATC 2 cut(s) 59, 967
BceAI ACGGC 3 cut(s) 136, 952, 1275
BciT130I CCWGG 1 cut(s) 646
BclI TGATCA 3 cut(s) 88, 283, 1020
BcnI CCSGG 1 cut(s) 1505
BcoDI GTCTC 2 cut(s) 349, 1284
BfaI CTAG 2 cut(s) 635, 921
BfmI CTRYAG 3 cut(s) 108, 546, 849
BfuAI ACCTGC 1 cut(s) 484
BmcAI AGTACT 2 cut(s) 220, 1311
Bme1390I CCNGG 2 cut(s) 646, 1505
Bme18I GGWCC 1 cut(s) 648
BmgT120I GGNCC 2 cut(s) 648, 1261
BmiI GGNNCC 4 cut(s) 871, 1230, 1407, 1485
BmrFI CCNGG 2 cut(s) 646, 1505
BmsI GCATC 4 cut(s) 421, 572, 879, 1212
BpiI GAAGAC 1 cut(s) 1391
BpmI CTGGAG 1 cut(s) 786
Bpu10I CCTNAGC 2 cut(s) 254, 1179
Bpu14I TTCGAA 1 cut(s) 582
BpuEI CTTGAG 1 cut(s) 687
BpuMI CCSGG 1 cut(s) 1505
BsaBI GATNNNNATC 1 cut(s) 87
BsaJI CCNNGG 3 cut(s) 152, 1409, 1503
BsaWI WCCGGW 1 cut(s) 872
BsaXI ACNNNNNCTCC 4 cut(s) 164, 194, 318, 348
Bsc4I CCNNNNNNNGG 3 cut(s) 1357, 1453, 1480
Bse118I RCCGGY 1 cut(s) 122
Bse1I ACTGG 4 cut(s) 40, 80, 216, 1541
Bse3DI GCAATG 1 cut(s) 651
Bse8I GATNNNNATC 1 cut(s) 87
BseAI TCCGGA 1 cut(s) 872
BseBI CCWGG 1 cut(s) 646
BseDI CCNNGG 3 cut(s) 152, 1409, 1503
BseGI GGATG 3 cut(s) 208, 440, 908
BseJI GATNNNNATC 1 cut(s) 87
BseLI CCNNNNNNNGG 3 cut(s) 1357, 1453, 1480
BseMI GCAATG 1 cut(s) 651
BseMII CTCAG 1 cut(s) 268
BseNI ACTGG 4 cut(s) 40, 80, 216, 1541
BsgI GTGCAG 1 cut(s) 738
BshFI GGCC 6 cut(s) 151, 787, 831, 1056, 1262, 1473
BshNI GGYRCC 2 cut(s) 1228, 1483
BsiSI CCGG 3 cut(s) 123, 873, 1505
BslI CCNNNNNNNGG 3 cut(s) 1357, 1453, 1480
BsmAI GTCTC 2 cut(s) 349, 1284
BsnI GGCC 6 cut(s) 151, 787, 831, 1056, 1262, 1473
Bsp119I TTCGAA 1 cut(s) 582
Bsp13I TCCGGA 1 cut(s) 872
Bsp19I CCATGG 1 cut(s) 1409
BspACI CCGC 3 cut(s) 117, 1116, 1394
BspANI GGCC 6 cut(s) 151, 787, 831, 1056, 1262, 1473
BspCNI CTCAG 1 cut(s) 267
BspEI TCCGGA 1 cut(s) 872
BspHI TCATGA 2 cut(s) 85, 406
BspLI GGNNCC 4 cut(s) 871, 1230, 1407, 1485
BspMAI CTGCAG 3 cut(s) 112, 550, 853
BspMI ACCTGC 1 cut(s) 484
BspQI GCTCTTC 1 cut(s) 1457
BspT104I TTCGAA 1 cut(s) 582
BspT107I GGYRCC 2 cut(s) 1228, 1483
BsrDI GCAATG 1 cut(s) 651
BsrFI RCCGGY 1 cut(s) 122
BsrI ACTGG 4 cut(s) 40, 80, 216, 1541
BssAI RCCGGY 1 cut(s) 122
BssECI CCNNGG 3 cut(s) 152, 1409, 1503
BssT1I CCWWGG 1 cut(s) 1409
Bst2UI CCWGG 1 cut(s) 646
Bst4CI ACNGT 3 cut(s) 719, 917, 953
Bst6I CTCTTC 5 cut(s) 61, 193, 910, 1084, 1457
BstAPI GCANNNNNTGC 1 cut(s) 107
BstBI TTCGAA 1 cut(s) 582
BstC8I GCNNGC 4 cut(s) 124, 561, 965, 1227
BstDEI CTNAG 2 cut(s) 254, 1179
BstDSI CCRYGG 2 cut(s) 152, 1409
BstF5I GGATG 3 cut(s) 208, 440, 908
BstHHI GCGC 1 cut(s) 658
BstMAI GTCTC 2 cut(s) 349, 1284
BstNI CCWGG 1 cut(s) 646
BstNSI RCATGY 1 cut(s) 563
BstSCI CCNGG 2 cut(s) 644, 1503
BstSFI CTRYAG 3 cut(s) 108, 546, 849
BstV2I GAAGAC 1 cut(s) 1391
BstX2I RGATCY 3 cut(s) 869, 1405, 1456
BstXI CCANNNNNNTGG 1 cut(s) 78
BstYI RGATCY 3 cut(s) 869, 1405, 1456
BsuRI GGCC 6 cut(s) 151, 787, 831, 1056, 1262, 1473
BtgI CCRYGG 2 cut(s) 152, 1409
BtgZI GCGATG 1 cut(s) 210
BtsCI GGATG 3 cut(s) 208, 440, 908
BtsIMutI CAGTG 1 cut(s) 922
BveI ACCTGC 1 cut(s) 484
Cac8I GCNNGC 4 cut(s) 124, 561, 965, 1227
CaiI CAGNNNCTG 4 cut(s) 11, 107, 645, 1557
CciI TCATGA 2 cut(s) 85, 406
CfoI GCGC 1 cut(s) 658
Cfr10I RCCGGY 1 cut(s) 122
Cfr13I GGNCC 2 cut(s) 648, 1261
CseI GACGC 1 cut(s) 361
CsiI ACCWGGT 1 cut(s) 644
Csp6I GTAC 8 cut(s) 219, 469, 901, 1149, 1310, 1330, 1355, 1497
CviQI GTAC 8 cut(s) 219, 469, 901, 1149, 1310, 1330, 1355, 1497
DdeI CTNAG 2 cut(s) 254, 1179
EaeI YGGCCR 2 cut(s) 149, 829
Eam1104I CTCTTC 5 cut(s) 61, 193, 910, 1084, 1457
EarI CTCTTC 5 cut(s) 61, 193, 910, 1084, 1457
Eco130I CCWWGG 1 cut(s) 1409
Eco147I AGGCCT 2 cut(s) 1056, 1473
Eco47I GGWCC 1 cut(s) 648
Eco57I CTGAAG 3 cut(s) 1176, 1290, 1481
EcoRII CCWGG 1 cut(s) 644
EcoT14I CCWWGG 1 cut(s) 1409
EcoT22I ATGCAT 2 cut(s) 561, 565
ErhI CCWWGG 1 cut(s) 1409
FbaI TGATCA 3 cut(s) 88, 283, 1020
FokI GGATG 3 cut(s) 215, 427, 895
FspBI CTAG 2 cut(s) 635, 921
GlaI GCGC 1 cut(s) 657
GsuI CTGGAG 1 cut(s) 786
HaeIII GGCC 6 cut(s) 151, 787, 831, 1056, 1262, 1473
HapII CCGG 3 cut(s) 123, 873, 1505
HgaI GACGC 1 cut(s) 361
HhaI GCGC 1 cut(s) 658
Hin6I GCGC 1 cut(s) 656
HinP1I GCGC 1 cut(s) 656
HinfI GANTC 7 cut(s) 24, 263, 276, 403, 896, 1112, 1324
HpaII CCGG 3 cut(s) 123, 873, 1505
HphI GGTGA 3 cut(s) 83, 977, 1436
Hpy166II GTNNAC 1 cut(s) 528
Hpy188I TCNGA 7 cut(s) 340, 377, 825, 1033, 1159, 1461, 1531
Hpy188III TCNNGA 4 cut(s) 86, 407, 873, 1514
Hpy8I GTNNAC 1 cut(s) 528
Hpy99I CGWCG 2 cut(s) 311, 377
HpyAV CCTTC 2 cut(s) 777, 1274
HpyCH4III ACNGT 3 cut(s) 719, 917, 953
HpyCH4IV ACGT 1 cut(s) 1490
HpyF3I CTNAG 2 cut(s) 254, 1179
HpySE526I ACGT 1 cut(s) 1490
HspAI GCGC 1 cut(s) 656
Kpn2I TCCGGA 1 cut(s) 872
KroI GCCGGC 1 cut(s) 122
KroNI GCCGGC 1 cut(s) 124
Ksp22I TGATCA 3 cut(s) 88, 283, 1020
LguI GCTCTTC 1 cut(s) 1457
LmnI GCTCC 2 cut(s) 767, 807
LweI GCATC 4 cut(s) 421, 572, 879, 1212
MabI ACCWGGT 1 cut(s) 644
MaeI CTAG 2 cut(s) 635, 921
MaeII ACGT 1 cut(s) 1490
MaeIII GTNAC 3 cut(s) 713, 983, 1004
MfeI CAATTG 1 cut(s) 517
MflI RGATCY 3 cut(s) 869, 1405, 1456
MlsI TGGCCA 1 cut(s) 831
MluNI TGGCCA 1 cut(s) 831
MlyI GAGTC 3 cut(s) 18, 270, 397
MmeI TCCRAC 4 cut(s) 207, 264, 355, 936
Mox20I TGGCCA 1 cut(s) 831
Mph1103I ATGCAT 2 cut(s) 561, 565
MroI TCCGGA 1 cut(s) 872
MroNI GCCGGC 1 cut(s) 122
MroXI GAANNNNTTC 1 cut(s) 1323
MscI TGGCCA 1 cut(s) 831
MseI TTAA 5 cut(s) 368, 600, 948, 1200, 1335
MslI CAYNNNNRTG 1 cut(s) 96
Msp20I TGGCCA 1 cut(s) 831
MspA1I CMGCKG 5 cut(s) 8, 107, 113, 119, 545
MspI CCGG 3 cut(s) 123, 873, 1505
MspR9I CCNGG 2 cut(s) 646, 1505
MunI CAATTG 1 cut(s) 517
MvaI CCWGG 1 cut(s) 646
NaeI GCCGGC 1 cut(s) 124
NciI CCSGG 1 cut(s) 1505
NcoI CCATGG 1 cut(s) 1409
NgoMIV GCCGGC 1 cut(s) 122
NlaIV GGNNCC 4 cut(s) 871, 1230, 1407, 1485
NmeAIII GCCGAG 2 cut(s) 116, 1026
NmuCI GTSAC 1 cut(s) 983
NsiI ATGCAT 2 cut(s) 561, 565
NspI RCATGY 1 cut(s) 563
NspV TTCGAA 1 cut(s) 582
PaeI GCATGC 1 cut(s) 563
PagI TCATGA 2 cut(s) 85, 406
PceI AGGCCT 2 cut(s) 1056, 1473
PciSI GCTCTTC 1 cut(s) 1457
PcsI WCGNNNNNNNCGW 1 cut(s) 143
PdiI GCCGGC 1 cut(s) 124
PdmI GAANNNNTTC 1 cut(s) 1323
PfeI GAWTC 4 cut(s) 263, 896, 1112, 1324
PleI GAGTC 3 cut(s) 18, 270, 397
PpsI GAGTC 3 cut(s) 18, 270, 397
PshBI ATTAAT 1 cut(s) 600
Psp6I CCWGG 1 cut(s) 644
PspGI CCWGG 1 cut(s) 644
PspN4I GGNNCC 4 cut(s) 871, 1230, 1407, 1485
PspPI GGNCC 2 cut(s) 648, 1261
PsrI GAACNNNNNNTAC 2 cut(s) 1322, 1354
PstI CTGCAG 3 cut(s) 112, 550, 853
PstNI CAGNNNCTG 4 cut(s) 11, 107, 645, 1557
PsuI RGATCY 3 cut(s) 869, 1405, 1456
PvuII CAGCTG 4 cut(s) 8, 107, 113, 545
RsaI GTAC 8 cut(s) 220, 470, 902, 1150, 1311, 1331, 1356, 1498
RsaNI GTAC 8 cut(s) 219, 469, 901, 1149, 1310, 1330, 1355, 1497
RseI CAYNNNNRTG 1 cut(s) 96
SapI GCTCTTC 1 cut(s) 1457
SaqAI TTAA 5 cut(s) 368, 600, 948, 1200, 1335
Sau96I GGNCC 2 cut(s) 648, 1261
ScaI AGTACT 2 cut(s) 220, 1311
SchI GAGTC 3 cut(s) 18, 270, 397
ScrFI CCNGG 2 cut(s) 646, 1505
SexAI ACCWGGT 1 cut(s) 644
SfaNI GCATC 4 cut(s) 421, 572, 879, 1212
SfcI CTRYAG 3 cut(s) 108, 546, 849
SfuI TTCGAA 1 cut(s) 582
SinI GGWCC 1 cut(s) 648
SmiMI CAYNNNNRTG 1 cut(s) 96
SmlI CTYRAG 1 cut(s) 702
SmoI CTYRAG 1 cut(s) 702
SphI GCATGC 1 cut(s) 563
SseBI AGGCCT 2 cut(s) 1056, 1473
SsiI CCGC 3 cut(s) 117, 1116, 1394
SspI AATATT 2 cut(s) 322, 814
SspMI CTAG 2 cut(s) 635, 921
StuI AGGCCT 2 cut(s) 1056, 1473
StyD4I CCNGG 2 cut(s) 644, 1503
StyI CCWWGG 1 cut(s) 1409
TaaI ACNGT 3 cut(s) 719, 917, 953
TaiI ACGT 1 cut(s) 1493
TaqI TCGA 3 cut(s) 27, 582, 955
TatI WGTACW 5 cut(s) 218, 1148, 1309, 1329, 1354
TauI GCSGC 1 cut(s) 119
TfiI GAWTC 4 cut(s) 263, 896, 1112, 1324
Tru1I TTAA 5 cut(s) 368, 600, 948, 1200, 1335
Tru9I TTAA 5 cut(s) 368, 600, 948, 1200, 1335
TscAI CASTG 1 cut(s) 922
TseFI GTSAC 1 cut(s) 983
Tsp45I GTSAC 1 cut(s) 983
TspDTI ATGAA 6 cut(s) 329, 752, 897, 1125, 1194, 1332
TspRI CASTG 1 cut(s) 922
VpaK11BI GGWCC 1 cut(s) 648
VspI ATTAAT 1 cut(s) 600
XapI RAATTY 1 cut(s) 925
XceI RCATGY 1 cut(s) 563
XmnI GAANNNNTTC 1 cut(s) 1323
XspI CTAG 2 cut(s) 635, 921
ZrmI AGTACT 2 cut(s) 220, 1311
Zsp2I ATGCAT 2 cut(s) 561, 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.