Rroxscaffold_5G00386180

helix loop helix domain

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
65134900 .. 65138027
3128 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00386180.1

Sequence Viewer

Length: 1572 bp
ATGGCAGCTGCTGACCAATGCCGACTCGACAATACTGGAAATTGTGTTGCCATCTCTTCCTCTACACAACCAAACTGGTGGGATCATGATCACCTCCATGAAGCAGCTGCAGCTGCCGCTGCCGGCTCTCATCTCTCGGCTACTTCGTGGCCGTGGCACCAGCAGCAGCAGCCAAACCCTAACTCCAACTCTTCTTGCGATGAGGATGTTTCAATGTCCAGTACTTCCTTTACCAATGCCTCCAACCACTCCAGCCTCAGCGTTGATTCCTCTCGCAGACTCGTTGATCAGCGTTCTGCTTCGCCCAACGACGACTTGAATAATATTGGAGAACAGGTTTCTGATAATCAAATATGGAGACAAGTTCTATTAAGCGTCGGAAACAATGATTTGAACAGCAGTATGACTCATGATGTAGGAGAGAACTTCCTTGATGCACTATCATCCAAGAACTTGTCAAATACTGCTATGTACGAACCTGCTTGTGATTACTTGAAGAAATTGGACAACGCTAGTAGCAATTGGGAGTTCACAAACTCATCATCAGCTGCAGCTACTATGCATGCATCTAATCTCAACAATTTCGAAAGGCAAATCAACATTAATGGATCGTTTAGCAGCGAGAACTTGTCTAATCTAGTCAGCACCTGGTCCATTGCGCCACCTGAACCACAAGTAGCCAATAGCCCTTTCTTCAATCTTCCTCAAGTGTCATGTTACGGTGCTAATAATAATTTGATGAAAGTTGAAAGTGCTGCACAATTAGCTGGAGCAAACTTGCATGGAAGGCCATTTAGTTCTGATAATGGGAGCAATATTGACTATCAGATTGGTCTCAACAACACAATGGCTGCAGATGATAGCTACTATGGATCAGGAAATGGTTTAGTGATGCCCGATTCGTACTCTTCATCCAACAGTGCTAGAAATTTCACAGATGTCATATCTTTTAACAGTCGATTAGGCAAGCCGTTGATGGATCATAGTCACCATGCACAAAAGCCGAGTAACTTCAAATCTTTGATCAACTTATCTGATAACACTTCAAAGAAGCAAGGCCTCCAAACTTCTTCGCCGACAAGAATGAGTGGAAGAGGACAAGGAACTGCAAATGAATCCGCAGGGAAGAAGAAACGAACAGATGAGAGTAGTACATCATCAGAAATAGTTTTGAAAAAGCCTAAGCAAGAAACTTCAGCAGTTAATTCATCATCATCTGTAAAGATGCAGGCACCAAAAGTCAAGGTTGCTGATAAGATCACGGCCCTTCAACAAATCGTGTCTCCATTTGGAAAGACTGATACAGCTTCAGTACTATATGAAGCGATTCAGTACATTAAGTTCCTCCAAGACCAAGTACAGGTGCTATTGAGTAGCCCTTATTTGAAGACGAATCCGCATAAGCAGGATCCATGGGGAAAATTGGATCAAATTAGGGGAGATCACCCAAAGGTGGATCTGAAGAGCAGAGGCCTATGCTTGGTGCCTACGTCATGTACGCCCCCGGTTTATCGTGAAAATACAGGATCAGACTACTGGACACCAACATACAGAGGCTGTTTGTATAGATAA

Protein Analysis

523

Amino Acids

56.97

Weight (kDa)

6.16

Isoelectric Point (pI)

40.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 487
AccB1I GGYRCC 3 cut(s) 156, 1231, 1483
AciI CCGC 3 cut(s) 117, 1119, 1397
AclWI GGATC 9 cut(s) 90, 616, 880, 987, 1403, 1416, 1434, 1464, 1534
AcoI YGGCCR 1 cut(s) 149
AcsI RAATTY 1 cut(s) 928
AcuI CTGAAG 3 cut(s) 1179, 1293, 1481
AfaI GTAC 8 cut(s) 223, 473, 905, 1153, 1314, 1334, 1359, 1498
AfiI CCNNNNNNNGG 3 cut(s) 1360, 1453, 1480
AjnI CCWGG 1 cut(s) 647
AjuI GAANNNNNNNTTGG 2 cut(s) 674, 706
AluBI AGCT 8 cut(s) 8, 107, 113, 548, 554, 767, 864, 1307
AluI AGCT 8 cut(s) 8, 107, 113, 548, 554, 767, 864, 1307
Alw26I GTCTC 3 cut(s) 352, 839, 1287
AlwI GGATC 9 cut(s) 90, 616, 880, 987, 1403, 1416, 1434, 1464, 1534
AlwNI CAGNNNCTG 3 cut(s) 11, 648, 1557
AoxI GGCC 5 cut(s) 149, 788, 1057, 1263, 1471
ApoI RAATTY 1 cut(s) 928
AseI ATTAAT 1 cut(s) 603
Asp700I GAANNNNTTC 1 cut(s) 1326
AspLEI GCGC 1 cut(s) 661
AspS9I GGNCC 2 cut(s) 651, 1264
AsuC2I CCSGG 1 cut(s) 1505
AsuHPI GGTGA 3 cut(s) 83, 980, 1436
AsuII TTCGAA 1 cut(s) 585
AvaII GGWCC 1 cut(s) 651
BamHI GGATCC 1 cut(s) 1408
BanI GGYRCC 3 cut(s) 156, 1231, 1483
BbsI GAAGAC 1 cut(s) 1394
BbvCI CCTCAGC 1 cut(s) 257
BccI CCATC 2 cut(s) 59, 970
BceAI ACGGC 3 cut(s) 136, 955, 1278
BciT130I CCWGG 1 cut(s) 649
BclI TGATCA 3 cut(s) 88, 286, 1023
BcnI CCSGG 1 cut(s) 1505
BcoDI GTCTC 3 cut(s) 352, 839, 1287
BfaI CTAG 3 cut(s) 513, 638, 924
BfmI CTRYAG 3 cut(s) 108, 549, 852
BfuAI ACCTGC 1 cut(s) 487
BmcAI AGTACT 2 cut(s) 223, 1314
Bme1390I CCNGG 2 cut(s) 649, 1505
Bme18I GGWCC 1 cut(s) 651
BmgT120I GGNCC 2 cut(s) 651, 1264
BmiI GGNNCC 4 cut(s) 158, 1233, 1410, 1485
BmrFI CCNGG 2 cut(s) 649, 1505
BmsI GCATC 4 cut(s) 424, 575, 882, 1215
BpiI GAAGAC 1 cut(s) 1394
BpmI CTGGAG 2 cut(s) 235, 789
Bpu10I CCTNAGC 2 cut(s) 257, 1182
Bpu14I TTCGAA 1 cut(s) 585
BpuEI CTTGAG 1 cut(s) 690
BpuMI CCSGG 1 cut(s) 1505
BsaBI GATNNNNATC 1 cut(s) 87
BsaI GGTCTC 1 cut(s) 839
BsaJI CCNNGG 3 cut(s) 152, 1412, 1503
BsaXI ACNNNNNCTCC 4 cut(s) 167, 197, 321, 351
Bsc4I CCNNNNNNNGG 3 cut(s) 1360, 1453, 1480
Bse118I RCCGGY 1 cut(s) 122
Bse1I ACTGG 4 cut(s) 40, 80, 219, 1541
Bse3DI GCAATG 1 cut(s) 654
Bse8I GATNNNNATC 1 cut(s) 87
BseBI CCWGG 1 cut(s) 649
BseDI CCNNGG 3 cut(s) 152, 1412, 1503
BseGI GGATG 3 cut(s) 211, 443, 911
BseJI GATNNNNATC 1 cut(s) 87
BseLI CCNNNNNNNGG 3 cut(s) 1360, 1453, 1480
BseMI GCAATG 1 cut(s) 654
BseMII CTCAG 1 cut(s) 271
BseNI ACTGG 4 cut(s) 40, 80, 219, 1541
BsgI GTGCAG 1 cut(s) 741
BshFI GGCC 5 cut(s) 151, 790, 1059, 1265, 1473
BshNI GGYRCC 3 cut(s) 156, 1231, 1483
BsiSI CCGG 2 cut(s) 123, 1505
BslI CCNNNNNNNGG 3 cut(s) 1360, 1453, 1480
BsmAI GTCTC 3 cut(s) 352, 839, 1287
BsnI GGCC 5 cut(s) 151, 790, 1059, 1265, 1473
Bso31I GGTCTC 1 cut(s) 839
Bsp119I TTCGAA 1 cut(s) 585
Bsp19I CCATGG 1 cut(s) 1412
BspACI CCGC 3 cut(s) 117, 1119, 1397
BspANI GGCC 5 cut(s) 151, 790, 1059, 1265, 1473
BspCNI CTCAG 1 cut(s) 270
BspHI TCATGA 2 cut(s) 85, 409
BspLI GGNNCC 4 cut(s) 158, 1233, 1410, 1485
BspMAI CTGCAG 3 cut(s) 112, 553, 856
BspMI ACCTGC 1 cut(s) 487
BspPI GGATC 9 cut(s) 90, 616, 880, 987, 1403, 1416, 1434, 1464, 1534
BspQI GCTCTTC 1 cut(s) 1457
BspT104I TTCGAA 1 cut(s) 585
BspT107I GGYRCC 3 cut(s) 156, 1231, 1483
BspTNI GGTCTC 1 cut(s) 839
BsrDI GCAATG 1 cut(s) 654
BsrFI RCCGGY 1 cut(s) 122
BsrI ACTGG 4 cut(s) 40, 80, 219, 1541
BssAI RCCGGY 1 cut(s) 122
BssECI CCNNGG 3 cut(s) 152, 1412, 1503
BssT1I CCWWGG 1 cut(s) 1412
Bst2UI CCWGG 1 cut(s) 649
Bst4CI ACNGT 3 cut(s) 722, 920, 956
Bst6I CTCTTC 5 cut(s) 61, 196, 913, 1087, 1457
BstBI TTCGAA 1 cut(s) 585
BstC8I GCNNGC 4 cut(s) 124, 564, 968, 1230
BstDEI CTNAG 2 cut(s) 257, 1182
BstDSI CCRYGG 2 cut(s) 152, 1412
BstF5I GGATG 3 cut(s) 211, 443, 911
BstHHI GCGC 1 cut(s) 661
BstMAI GTCTC 3 cut(s) 352, 839, 1287
BstMWI GCNNNNNNNGC 8 cut(s) 110, 113, 116, 119, 163, 169, 764, 787
BstNI CCWGG 1 cut(s) 649
BstNSI RCATGY 1 cut(s) 566
BstSCI CCNGG 2 cut(s) 647, 1503
BstSFI CTRYAG 3 cut(s) 108, 549, 852
BstV2I GAAGAC 1 cut(s) 1394
BstX2I RGATCY 2 cut(s) 1408, 1456
BstXI CCANNNNNNTGG 1 cut(s) 78
BstYI RGATCY 2 cut(s) 1408, 1456
BsuRI GGCC 5 cut(s) 151, 790, 1059, 1265, 1473
BtgI CCRYGG 2 cut(s) 152, 1412
BtgZI GCGATG 1 cut(s) 213
BtsCI GGATG 3 cut(s) 211, 443, 911
BtsIMutI CAGTG 1 cut(s) 925
BveI ACCTGC 1 cut(s) 487
Cac8I GCNNGC 4 cut(s) 124, 564, 968, 1230
CaiI CAGNNNCTG 3 cut(s) 11, 648, 1557
CciI TCATGA 2 cut(s) 85, 409
CfoI GCGC 1 cut(s) 661
Cfr10I RCCGGY 1 cut(s) 122
Cfr13I GGNCC 2 cut(s) 651, 1264
CseI GACGC 1 cut(s) 364
CsiI ACCWGGT 1 cut(s) 647
Csp6I GTAC 8 cut(s) 222, 472, 904, 1152, 1313, 1333, 1358, 1497
CviAII CATG 9 cut(s) 86, 98, 410, 563, 714, 782, 992, 1413, 1494
CviQI GTAC 8 cut(s) 222, 472, 904, 1152, 1313, 1333, 1358, 1497
DdeI CTNAG 2 cut(s) 257, 1182
EaeI YGGCCR 1 cut(s) 149
Eam1104I CTCTTC 5 cut(s) 61, 196, 913, 1087, 1457
EarI CTCTTC 5 cut(s) 61, 196, 913, 1087, 1457
Eco130I CCWWGG 1 cut(s) 1412
Eco147I AGGCCT 2 cut(s) 1059, 1473
Eco31I GGTCTC 1 cut(s) 839
Eco47I GGWCC 1 cut(s) 651
Eco57I CTGAAG 3 cut(s) 1179, 1293, 1481
EcoRII CCWGG 1 cut(s) 647
EcoT14I CCWWGG 1 cut(s) 1412
EcoT22I ATGCAT 2 cut(s) 564, 568
ErhI CCWWGG 1 cut(s) 1412
FaeI CATG 9 cut(s) 89, 101, 413, 566, 717, 785, 995, 1416, 1497
FatI CATG 9 cut(s) 85, 97, 409, 562, 713, 781, 991, 1412, 1493
FbaI TGATCA 3 cut(s) 88, 286, 1023
FokI GGATG 3 cut(s) 218, 430, 898
FspBI CTAG 3 cut(s) 513, 638, 924
GlaI GCGC 1 cut(s) 660
GsuI CTGGAG 2 cut(s) 235, 789
HaeIII GGCC 5 cut(s) 151, 790, 1059, 1265, 1473
HapII CCGG 2 cut(s) 123, 1505
HgaI GACGC 1 cut(s) 364
HhaI GCGC 1 cut(s) 661
Hin1II CATG 9 cut(s) 89, 101, 413, 566, 717, 785, 995, 1416, 1497
Hin6I GCGC 1 cut(s) 659
HinP1I GCGC 1 cut(s) 659
HinfI GANTC 8 cut(s) 24, 266, 279, 406, 899, 1115, 1327, 1393
HpaII CCGG 2 cut(s) 123, 1505
HphI GGTGA 3 cut(s) 83, 980, 1436
Hpy166II GTNNAC 1 cut(s) 531
Hpy188I TCNGA 8 cut(s) 343, 380, 802, 828, 1036, 1162, 1461, 1531
Hpy188III TCNNGA 4 cut(s) 86, 410, 876, 1514
Hpy8I GTNNAC 1 cut(s) 531
Hpy99I CGWCG 2 cut(s) 314, 380
HpyAV CCTTC 2 cut(s) 780, 1277
HpyCH4III ACNGT 3 cut(s) 722, 920, 956
HpyCH4IV ACGT 1 cut(s) 1490
HpyF10VI GCNNNNNNNGC 8 cut(s) 110, 113, 116, 119, 163, 169, 764, 787
HpyF3I CTNAG 2 cut(s) 257, 1182
HpySE526I ACGT 1 cut(s) 1490
Hsp92II CATG 9 cut(s) 89, 101, 413, 566, 717, 785, 995, 1416, 1497
HspAI GCGC 1 cut(s) 659
KroI GCCGGC 1 cut(s) 122
KroNI GCCGGC 1 cut(s) 124
Ksp22I TGATCA 3 cut(s) 88, 286, 1023
LguI GCTCTTC 1 cut(s) 1457
LmnI GCTCC 2 cut(s) 770, 810
LweI GCATC 4 cut(s) 424, 575, 882, 1215
MabI ACCWGGT 1 cut(s) 647
MaeI CTAG 3 cut(s) 513, 638, 924
MaeII ACGT 1 cut(s) 1490
MaeIII GTNAC 3 cut(s) 716, 986, 1007
MfeI CAATTG 1 cut(s) 520
MflI RGATCY 2 cut(s) 1408, 1456
MlyI GAGTC 3 cut(s) 18, 273, 400
MmeI TCCRAC 4 cut(s) 210, 267, 358, 939
Mph1103I ATGCAT 2 cut(s) 564, 568
MroNI GCCGGC 1 cut(s) 122
MroXI GAANNNNTTC 1 cut(s) 1326
MseI TTAA 5 cut(s) 371, 603, 951, 1203, 1338
MslI CAYNNNNRTG 1 cut(s) 96
MspA1I CMGCKG 5 cut(s) 8, 107, 113, 119, 548
MspI CCGG 2 cut(s) 123, 1505
MspR9I CCNGG 2 cut(s) 649, 1505
MunI CAATTG 1 cut(s) 520
MvaI CCWGG 1 cut(s) 649
MwoI GCNNNNNNNGC 8 cut(s) 110, 113, 116, 119, 163, 169, 764, 787
NaeI GCCGGC 1 cut(s) 124
NciI CCSGG 1 cut(s) 1505
NcoI CCATGG 1 cut(s) 1412
NgoMIV GCCGGC 1 cut(s) 122
NlaIII CATG 9 cut(s) 89, 101, 413, 566, 717, 785, 995, 1416, 1497
NlaIV GGNNCC 4 cut(s) 158, 1233, 1410, 1485
NmeAIII GCCGAG 2 cut(s) 116, 1029
NmuCI GTSAC 1 cut(s) 986
NsiI ATGCAT 2 cut(s) 564, 568
NspI RCATGY 1 cut(s) 566
NspV TTCGAA 1 cut(s) 585
PaeI GCATGC 1 cut(s) 566
PagI TCATGA 2 cut(s) 85, 409
PceI AGGCCT 2 cut(s) 1059, 1473
PciSI GCTCTTC 1 cut(s) 1457
PcsI WCGNNNNNNNCGW 1 cut(s) 143
PdiI GCCGGC 1 cut(s) 124
PdmI GAANNNNTTC 1 cut(s) 1326
PfeI GAWTC 5 cut(s) 266, 899, 1115, 1327, 1393
PleI GAGTC 3 cut(s) 18, 273, 400
PpsI GAGTC 3 cut(s) 18, 273, 400
PshBI ATTAAT 1 cut(s) 603
Psp6I CCWGG 1 cut(s) 647
PspGI CCWGG 1 cut(s) 647
PspN4I GGNNCC 4 cut(s) 158, 1233, 1410, 1485
PspPI GGNCC 2 cut(s) 651, 1264
PsrI GAACNNNNNNTAC 2 cut(s) 1325, 1357
PstI CTGCAG 3 cut(s) 112, 553, 856
PstNI CAGNNNCTG 3 cut(s) 11, 648, 1557
PsuI RGATCY 2 cut(s) 1408, 1456
PvuII CAGCTG 4 cut(s) 8, 107, 113, 548
RsaI GTAC 8 cut(s) 223, 473, 905, 1153, 1314, 1334, 1359, 1498
RsaNI GTAC 8 cut(s) 222, 472, 904, 1152, 1313, 1333, 1358, 1497
RseI CAYNNNNRTG 1 cut(s) 96
SapI GCTCTTC 1 cut(s) 1457
SaqAI TTAA 5 cut(s) 371, 603, 951, 1203, 1338
Sau96I GGNCC 2 cut(s) 651, 1264
ScaI AGTACT 2 cut(s) 223, 1314
SchI GAGTC 3 cut(s) 18, 273, 400
ScrFI CCNGG 2 cut(s) 649, 1505
SexAI ACCWGGT 1 cut(s) 647
SfaNI GCATC 4 cut(s) 424, 575, 882, 1215
SfcI CTRYAG 3 cut(s) 108, 549, 852
SfuI TTCGAA 1 cut(s) 585
SinI GGWCC 1 cut(s) 651
SmiMI CAYNNNNRTG 1 cut(s) 96
SmlI CTYRAG 1 cut(s) 705
SmoI CTYRAG 1 cut(s) 705
SphI GCATGC 1 cut(s) 566
SseBI AGGCCT 2 cut(s) 1059, 1473
SsiI CCGC 3 cut(s) 117, 1119, 1397
SspI AATATT 2 cut(s) 325, 817
SspMI CTAG 3 cut(s) 513, 638, 924
StuI AGGCCT 2 cut(s) 1059, 1473
StyD4I CCNGG 2 cut(s) 647, 1503
StyI CCWWGG 1 cut(s) 1412
TaaI ACNGT 3 cut(s) 722, 920, 956
TaiI ACGT 1 cut(s) 1493
TaqI TCGA 3 cut(s) 27, 585, 958
TatI WGTACW 5 cut(s) 221, 1151, 1312, 1332, 1357
TauI GCSGC 1 cut(s) 119
TfiI GAWTC 5 cut(s) 266, 899, 1115, 1327, 1393
Tru1I TTAA 5 cut(s) 371, 603, 951, 1203, 1338
Tru9I TTAA 5 cut(s) 371, 603, 951, 1203, 1338
TscAI CASTG 1 cut(s) 925
TseFI GTSAC 1 cut(s) 986
Tsp45I GTSAC 1 cut(s) 986
TspDTI ATGAA 6 cut(s) 114, 755, 900, 1128, 1197, 1335
TspRI CASTG 1 cut(s) 925
VpaK11BI GGWCC 1 cut(s) 651
VspI ATTAAT 1 cut(s) 603
XapI RAATTY 1 cut(s) 928
XceI RCATGY 1 cut(s) 566
XmnI GAANNNNTTC 1 cut(s) 1326
XspI CTAG 3 cut(s) 513, 638, 924
ZrmI AGTACT 2 cut(s) 223, 1314
Zsp2I ATGCAT 2 cut(s) 564, 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.