MD16G1009300.v1.1

helix loop helix domain

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Forward (+)
675375 .. 677925
2551 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1009300.v1.1.491

Sequence Viewer

Length: 1635 bp
ATGGCCGAAGAATGCAGTGTTGCAATCTCTTCTTCCTCTGCGCGGCTAACGCAGCAAAATTGGTGGGATCTTGTCAGCTCTACCAACCCATGGCAGCAGCAGCTAAACCAGAAGTACTCCAACTCTAATAATAATTGTGATGATCTTGATCAGGATGTTTCAAACTCCAGTACTTCATTTACCAATGCCTCCAACCACTCAAGCCTCAGCGTCGACTCCTCTCGCAGAATGCTTGCTGATCAGCGTTCTGCTTCTTCCAACGACGACCTAATTAATGGCGAACAGGTTTCTGAGAATCATATTTGGAACCATGTTCTATTAAACGCTAATGCAAACCATGATTTAAGCAACGATGATCATGGTGTTGGAGAGAACTTCCTAGATGCACTGTCATCCAAGAGCTTGTCAACTCATCATGTTATGTACAATGAGCCTGCTTGTGACGACTTGAAGAAGTTGGACAACAATAGTACTTGGGAGTTCATAAACTCAGCTGCCTCCAATTTCAACAATTTTGAAAAGCATATAAATGGAGGATTCATGGACAACAACATGAATATTAGTATTGAGAAAGAAAGGATAACCAAGATGTCTAATCAAGTCAGCACCTGGTCCATTGCATCCCCAGAACCACAACTAGTACTCAACAATATGCCTCCTCATCAAATAATGGATCAAGAAAACAAACTTTGTTCTACTATCTTTCATCATGATCGTCAGTACTCACAACCAAATCTCTGTCATTTAAAGCCACAACCGTTTTTTAATGATTCCACATCGTCATGCAATCCTCAGATGGGAATTACAAATATAAACTCCGGATCCAGTTTATTTTCCTGTTACAGCAGTCAAATTATGAAGGTAGATGATCAGAATCATGGACACCATAATGGCATTGAACATCAGATTGGCCTCAACAACGCAACGGCTGCATATAATCATACTAGCAAGTACTTCAATGGAAATGGATCACTAGTGTCGGATTCTTATTATTCTTCATCCACTAGTACTACTGCTGCCAGAAATTTAGCAGATGTTGGATCTTTTACGAGTCAATTAGGAAATAAACCCTTGATTGACCTTCATGCTCCTAAGTCTTGTTTCAAATCTTTCAACTCTTCTGATCATTCTAAGAAGCAAACCCTGCAAACTTCTTCGTCGGCAAGAATGAGTAGTGGAAGAGGACAGGGAATTGCAAATGAAGGAAAGAAGAAAAGAACGGACGACACATCATCAGAAACAGTCGTGAAAAAGCCTAAGCAAGAAACTTCTACAGGATCATCTGCAAAGATTCAGGCACCAAAAGTCAAGCTTACGGACAGAATCACGGCCCTTCAACCAATCGTGTCTCCGTTTGGAAAGACCGATACAGCATCAGTATTATATGAAGCGATTCAGTACATTAAGTTCATGCAAGACCAAGTGCACGTGCTACTGAATAGCCCTAATTTGAAGACAAATTCACCAAAGGATCCATGTGCGATGGATAGAAAAGATTACAAGGGGGACACAATGGTTGATCTCAAGAGCAAAGGCCTATGTTTGGTACCTGTTTCATGTACCCCTCAAGTTTATCGTGAAAATACAGGATCAGAGTATTGGACACCAACATATAGAGGATGTTTGTATAGATAA

Protein Analysis

545

Amino Acids

60.34

Weight (kDa)

6.28

Isoelectric Point (pI)

39.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1546
AccB1I GGYRCC 2 cut(s) 1297, 1546
AccB7I CCANNNNNTGG 1 cut(s) 90
AccI GTMKAC 1 cut(s) 213
AccII CGCG 1 cut(s) 43
AccIII TCCGGA 1 cut(s) 818
AciI CCGC 1 cut(s) 43
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 1024, 1459
AcvI CACGTG 1 cut(s) 1429
AfiI CCNNNNNNNGG 4 cut(s) 42, 90, 797, 1543
AhlI ACTAGT 3 cut(s) 637, 973, 1004
AjnI CCWGG 1 cut(s) 608
AjuI GAANNNNNNNTTGG 2 cut(s) 891, 923
AluBI AGCT 5 cut(s) 78, 103, 402, 494, 1312
AluI AGCT 5 cut(s) 78, 103, 402, 494, 1312
Alw21I GWGCWC 1 cut(s) 1428
Alw26I GTCTC 1 cut(s) 1353
Alw44I GTGCAC 1 cut(s) 1424
AlwNI CAGNNNCTG 1 cut(s) 609
Aor13HI TCCGGA 1 cut(s) 818
AoxI GGCC 4 cut(s) 3, 910, 1329, 1534
ApaLI GTGCAC 1 cut(s) 1424
ApeKI GCWGC 7 cut(s) 52, 94, 97, 100, 494, 929, 1016
ApoI RAATTY 2 cut(s) 1024, 1459
AseI ATTAAT 1 cut(s) 273
Asp700I GAANNNNTTC 1 cut(s) 1392
Asp718I GGTACC 1 cut(s) 1546
AspLEI GCGC 1 cut(s) 43
AspS9I GGNCC 2 cut(s) 612, 1330
AsuHPI GGTGA 1 cut(s) 1455
AvaII GGWCC 1 cut(s) 612
BaeGI GKGCMC 1 cut(s) 1428
BamHI GGATCC 2 cut(s) 821, 1471
BanI GGYRCC 2 cut(s) 1297, 1546
BbrPI CACGTG 1 cut(s) 1429
BbsI GAAGAC 1 cut(s) 1460
Bbv12I GWGCWC 1 cut(s) 1428
BbvCI CCTCAGC 1 cut(s) 206
BbvI GCAGC 7 cut(s) 64, 106, 109, 112, 481, 916, 1003
BccI CCATC 2 cut(s) 790, 1477
BceAI ACGGC 2 cut(s) 942, 1344
BciT130I CCWGG 1 cut(s) 610
BclI TGATCA 5 cut(s) 148, 238, 355, 868, 1123
BcoDI GTCTC 1 cut(s) 1353
BcuI ACTAGT 3 cut(s) 637, 973, 1004
BfaI CTAG 5 cut(s) 380, 638, 945, 974, 1005
BfmI CTRYAG 1 cut(s) 1272
BisI GCNGC 8 cut(s) 44, 53, 95, 98, 101, 495, 930, 1017
BlsI GCNGC 8 cut(s) 45, 54, 96, 99, 102, 496, 931, 1018
BmcAI AGTACT 7 cut(s) 116, 172, 472, 642, 722, 953, 1009
Bme1390I CCNGG 1 cut(s) 610
Bme18I GGWCC 1 cut(s) 612
BmgT120I GGNCC 2 cut(s) 612, 1330
BmiI GGNNCC 5 cut(s) 308, 823, 1299, 1473, 1548
BmrFI CCNGG 1 cut(s) 610
BmsI GCATC 3 cut(s) 373, 629, 1382
BpiI GAAGAC 1 cut(s) 1460
BpmI CTGGAG 1 cut(s) 151
Bpu10I CCTNAGC 2 cut(s) 206, 1257
BpuEI CTTGAG 3 cut(s) 184, 1508, 1551
BsaAI YACGTR 1 cut(s) 1429
BsaBI GATNNNNATC 2 cut(s) 147, 873
BsaJI CCNNGG 1 cut(s) 89
BsaWI WCCGGW 1 cut(s) 818
Bsc4I CCNNNNNNNGG 4 cut(s) 42, 90, 797, 1543
Bse1I ACTGG 2 cut(s) 168, 825
Bse3DI GCAATG 1 cut(s) 615
Bse8I GATNNNNATC 2 cut(s) 147, 873
BseAI TCCGGA 1 cut(s) 818
BseBI CCWGG 1 cut(s) 610
BseDI CCNNGG 1 cut(s) 89
BseGI GGATG 5 cut(s) 160, 392, 620, 998, 1625
BseJI GATNNNNATC 2 cut(s) 147, 873
BseLI CCNNNNNNNGG 4 cut(s) 42, 90, 797, 1543
BseMI GCAATG 1 cut(s) 615
BseMII CTCAG 4 cut(s) 220, 282, 504, 806
BseNI ACTGG 2 cut(s) 168, 825
BseRI GAGGAG 2 cut(s) 208, 648
BseSI GKGCMC 1 cut(s) 1428
BseXI GCAGC 7 cut(s) 64, 106, 109, 112, 481, 916, 1003
Bsh1236I CGCG 1 cut(s) 43
BshFI GGCC 4 cut(s) 5, 912, 1331, 1536
BshNI GGYRCC 2 cut(s) 1297, 1546
BsiHKAI GWGCWC 1 cut(s) 1428
BsiSI CCGG 1 cut(s) 819
BslFI GGGAC 1 cut(s) 1520
BslI CCNNNNNNNGG 4 cut(s) 42, 90, 797, 1543
BsmAI GTCTC 1 cut(s) 1353
BsmFI GGGAC 1 cut(s) 1520
BsmI GAATGC 2 cut(s) 17, 234
BsnI GGCC 4 cut(s) 5, 912, 1331, 1536
Bsp1286I GDGCHC 1 cut(s) 1428
Bsp13I TCCGGA 1 cut(s) 818
Bsp1407I TGTACA 1 cut(s) 423
Bsp19I CCATGG 1 cut(s) 89
BspACI CCGC 1 cut(s) 43
BspANI GGCC 4 cut(s) 5, 912, 1331, 1536
BspCNI CTCAG 4 cut(s) 219, 283, 503, 805
BspEI TCCGGA 1 cut(s) 818
BspFNI CGCG 1 cut(s) 43
BspHI TCATGA 1 cut(s) 709
BspLI GGNNCC 5 cut(s) 308, 823, 1299, 1473, 1548
BspT107I GGYRCC 2 cut(s) 1297, 1546
BsrDI GCAATG 1 cut(s) 615
BsrGI TGTACA 1 cut(s) 423
BsrI ACTGG 2 cut(s) 168, 825
BssECI CCNNGG 1 cut(s) 89
BssT1I CCWWGG 1 cut(s) 89
Bst2UI CCWGG 1 cut(s) 610
Bst4CI ACNGT 3 cut(s) 390, 759, 1243
Bst6I CTCTTC 3 cut(s) 34, 1123, 1174
BstAPI GCANNNNNTGC 2 cut(s) 929, 1144
BstAUI TGTACA 1 cut(s) 423
BstBAI YACGTR 1 cut(s) 1429
BstC8I GCNNGC 2 cut(s) 234, 435
BstDEI CTNAG 7 cut(s) 206, 291, 490, 792, 1092, 1131, 1257
BstDSI CCRYGG 1 cut(s) 89
BstF5I GGATG 5 cut(s) 160, 392, 620, 998, 1625
BstFNI CGCG 1 cut(s) 43
BstHHI GCGC 1 cut(s) 43
BstMAI GTCTC 1 cut(s) 1353
BstMWI GCNNNNNNNGC 5 cut(s) 49, 52, 100, 929, 1144
BstNI CCWGG 1 cut(s) 610
BstSCI CCNGG 1 cut(s) 608
BstSFI CTRYAG 1 cut(s) 1272
BstSLI GKGCMC 1 cut(s) 1428
BstUI CGCG 1 cut(s) 43
BstV1I GCAGC 7 cut(s) 64, 106, 109, 112, 481, 916, 1003
BstV2I GAAGAC 1 cut(s) 1460
BstX2I RGATCY 4 cut(s) 67, 821, 1040, 1471
BstYI RGATCY 4 cut(s) 67, 821, 1040, 1471
BsuRI GGCC 4 cut(s) 5, 912, 1331, 1536
BtgI CCRYGG 1 cut(s) 89
BtgZI GCGATG 1 cut(s) 1496
BtsCI GGATG 5 cut(s) 160, 392, 620, 998, 1625
BtsI GCAGTG 1 cut(s) 22
BtsIMutI CAGTG 2 cut(s) 22, 386
Cac8I GCNNGC 2 cut(s) 234, 435
CaiI CAGNNNCTG 1 cut(s) 609
CciI TCATGA 1 cut(s) 709
CfoI GCGC 1 cut(s) 43
Cfr13I GGNCC 2 cut(s) 612, 1330
CseI GACGC 1 cut(s) 199
CsiI ACCWGGT 1 cut(s) 608
CspCI CAANNNNNGTGG 2 cut(s) 44, 79
DdeI CTNAG 7 cut(s) 206, 291, 490, 792, 1092, 1131, 1257
DraI TTTAAA 1 cut(s) 747
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 34, 1123, 1174
EarI CTCTTC 3 cut(s) 34, 1123, 1174
Eco130I CCWWGG 1 cut(s) 89
Eco147I AGGCCT 1 cut(s) 1536
Eco47I GGWCC 1 cut(s) 612
Eco72I CACGTG 1 cut(s) 1429
EcoRII CCWGG 1 cut(s) 608
EcoT14I CCWWGG 1 cut(s) 89
ErhI CCWWGG 1 cut(s) 89
FalI AAGNNNNNCTT 2 cut(s) 1296, 1328
FaqI GGGAC 1 cut(s) 1520
FbaI TGATCA 5 cut(s) 148, 238, 355, 868, 1123
FblI GTMKAC 1 cut(s) 213
Fnu4HI GCNGC 8 cut(s) 44, 53, 95, 98, 101, 495, 930, 1017
FokI GGATG 4 cut(s) 167, 379, 607, 985
Fsp4HI GCNGC 8 cut(s) 44, 53, 95, 98, 101, 495, 930, 1017
FspBI CTAG 5 cut(s) 380, 638, 945, 974, 1005
GlaI GCGC 1 cut(s) 42
GluI GCNGC 8 cut(s) 44, 53, 95, 98, 101, 495, 930, 1017
GsuI CTGGAG 1 cut(s) 151
HaeIII GGCC 4 cut(s) 5, 912, 1331, 1536
HapII CCGG 1 cut(s) 819
HgaI GACGC 1 cut(s) 199
HhaI GCGC 1 cut(s) 43
Hin6I GCGC 1 cut(s) 41
HinP1I GCGC 1 cut(s) 41
HincII GTYRAC 2 cut(s) 214, 408
HindII GTYRAC 2 cut(s) 214, 408
HindIII AAGCTT 1 cut(s) 1310
HpaII CCGG 1 cut(s) 819
HphI GGTGA 1 cut(s) 1455
Hpy166II GTNNAC 3 cut(s) 214, 408, 1426
Hpy188I TCNGA 8 cut(s) 292, 795, 873, 906, 982, 1123, 1237, 1594
Hpy188III TCNNGA 8 cut(s) 146, 152, 677, 710, 819, 1246, 1525, 1577
Hpy8I GTNNAC 3 cut(s) 214, 408, 1426
Hpy99I CGWCG 3 cut(s) 215, 266, 1162
HpyAV CCTTC 4 cut(s) 853, 1091, 1196, 1343
HpyCH4III ACNGT 3 cut(s) 390, 759, 1243
HpyCH4IV ACGT 1 cut(s) 1428
HpyF10VI GCNNNNNNNGC 5 cut(s) 49, 52, 100, 929, 1144
HpyF3I CTNAG 7 cut(s) 206, 291, 490, 792, 1092, 1131, 1257
HpySE526I ACGT 1 cut(s) 1428
HspAI GCGC 1 cut(s) 41
Kpn2I TCCGGA 1 cut(s) 818
KpnI GGTACC 1 cut(s) 1550
Ksp22I TGATCA 5 cut(s) 148, 238, 355, 868, 1123
LmnI GCTCC 1 cut(s) 1093
Lsp1109I GCAGC 7 cut(s) 64, 106, 109, 112, 481, 916, 1003
LweI GCATC 3 cut(s) 373, 629, 1382
MabI ACCWGGT 1 cut(s) 608
MaeI CTAG 5 cut(s) 380, 638, 945, 974, 1005
MaeII ACGT 1 cut(s) 1428
MaeIII GTNAC 2 cut(s) 440, 839
MflI RGATCY 4 cut(s) 67, 821, 1040, 1471
MhlI GDGCHC 1 cut(s) 1428
MlyI GAGTC 2 cut(s) 209, 1060
MmeI TCCRAC 7 cut(s) 144, 216, 282, 346, 438, 960, 1018
MroI TCCGGA 1 cut(s) 818
MroXI GAANNNNTTC 1 cut(s) 1392
MseI TTAA 6 cut(s) 273, 320, 344, 746, 765, 1404
MslI CAYNNNNRTG 3 cut(s) 528, 781, 888
MspA1I CMGCKG 1 cut(s) 494
MspI CCGG 1 cut(s) 819
MspR9I CCNGG 1 cut(s) 610
Mva1269I GAATGC 2 cut(s) 17, 234
MvaI CCWGG 1 cut(s) 610
MvnI CGCG 1 cut(s) 43
MwoI GCNNNNNNNGC 5 cut(s) 49, 52, 100, 929, 1144
NcoI CCATGG 1 cut(s) 89
NlaIV GGNNCC 5 cut(s) 308, 823, 1299, 1473, 1548
NmuCI GTSAC 1 cut(s) 440
PagI TCATGA 1 cut(s) 709
PceI AGGCCT 1 cut(s) 1536
PctI GAATGC 2 cut(s) 17, 234
PdmI GAANNNNTTC 1 cut(s) 1392
PfeI GAWTC 8 cut(s) 295, 537, 770, 874, 983, 1291, 1323, 1393
PflMI CCANNNNNTGG 1 cut(s) 90
PkrI GCNGC 8 cut(s) 45, 54, 96, 99, 102, 496, 931, 1018
PleI GAGTC 2 cut(s) 209, 1059
PmaCI CACGTG 1 cut(s) 1429
PmlI CACGTG 1 cut(s) 1429
PpsI GAGTC 2 cut(s) 209, 1059
Ppu21I YACGTR 1 cut(s) 1429
PshBI ATTAAT 1 cut(s) 273
Psp6I CCWGG 1 cut(s) 608
PspCI CACGTG 1 cut(s) 1429
PspGI CCWGG 1 cut(s) 608
PspN4I GGNNCC 5 cut(s) 308, 823, 1299, 1473, 1548
PspPI GGNCC 2 cut(s) 612, 1330
PsrI GAACNNNNNNTAC 2 cut(s) 1391, 1423
PstNI CAGNNNCTG 1 cut(s) 609
PsuI RGATCY 4 cut(s) 67, 821, 1040, 1471
PvuII CAGCTG 1 cut(s) 494
RseI CAYNNNNRTG 3 cut(s) 528, 781, 888
SalI GTCGAC 1 cut(s) 212
SaqAI TTAA 6 cut(s) 273, 320, 344, 746, 765, 1404
SatI GCNGC 8 cut(s) 44, 53, 95, 98, 101, 495, 930, 1017
Sau96I GGNCC 2 cut(s) 612, 1330
ScaI AGTACT 7 cut(s) 116, 172, 472, 642, 722, 953, 1009
SchI GAGTC 2 cut(s) 209, 1060
ScrFI CCNGG 1 cut(s) 610
SduI GDGCHC 1 cut(s) 1428
SexAI ACCWGGT 1 cut(s) 608
SfaNI GCATC 3 cut(s) 373, 629, 1382
SfcI CTRYAG 1 cut(s) 1272
SinI GGWCC 1 cut(s) 612
SmiMI CAYNNNNRTG 3 cut(s) 528, 781, 888
SmlI CTYRAG 3 cut(s) 199, 1523, 1566
SmoI CTYRAG 3 cut(s) 199, 1523, 1566
SpeI ACTAGT 3 cut(s) 637, 973, 1004
SseBI AGGCCT 1 cut(s) 1536
SsiI CCGC 1 cut(s) 43
SspI AATATT 1 cut(s) 559
SspMI CTAG 5 cut(s) 380, 638, 945, 974, 1005
StuI AGGCCT 1 cut(s) 1536
StyD4I CCNGG 1 cut(s) 608
StyI CCWWGG 1 cut(s) 89
TaaI ACNGT 3 cut(s) 390, 759, 1243
TaiI ACGT 1 cut(s) 1431
TaqI TCGA 1 cut(s) 213
TaqII GACCGA 1 cut(s) 1379
TatI WGTACW 9 cut(s) 114, 170, 423, 470, 640, 720, 951, 1007, 1398
TauI GCSGC 1 cut(s) 46
TfiI GAWTC 8 cut(s) 295, 537, 770, 874, 983, 1291, 1323, 1393
Tru1I TTAA 6 cut(s) 273, 320, 344, 746, 765, 1404
Tru9I TTAA 6 cut(s) 273, 320, 344, 746, 765, 1404
TscAI CASTG 2 cut(s) 22, 393
TseFI GTSAC 1 cut(s) 440
TseI GCWGC 7 cut(s) 52, 94, 97, 100, 494, 929, 1016
Tsp45I GTSAC 1 cut(s) 440
TspGWI ACGGA 3 cut(s) 1235, 1331, 1341
TspRI CASTG 2 cut(s) 22, 393
Van91I CCANNNNNTGG 1 cut(s) 90
VneI GTGCAC 1 cut(s) 1424
VpaK11BI GGWCC 1 cut(s) 612
VspI ATTAAT 1 cut(s) 273
XapI RAATTY 2 cut(s) 1024, 1459
XmiI GTMKAC 1 cut(s) 213
XmnI GAANNNNTTC 1 cut(s) 1392
XspI CTAG 5 cut(s) 380, 638, 945, 974, 1005
ZrmI AGTACT 7 cut(s) 116, 172, 472, 642, 722, 953, 1009
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.