Rorug04G0364700

SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD H box

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0004404
Physical Location & Seq
Forward (+)
53680985 .. 53690307
9323 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0364700.1

Sequence Viewer

Length: 3078 bp
ATGTCCGGCGACGACCATGATTCGCGTCGCAAGCACCGCCGCGATCATTCCGACGACGACGCCGAGAAGTCTTCCAAGCGCCACAAGCACCGTCACCACCACCGCCACCACCGTCACCGCCACAGCAGCAAGAAGCGCGAAGAAGAGAGCAAGGCGGCCGCGGGTGAGGATATCGAAGCTCCTCCTCCTCCGCCGCCTGTTATGTTGTCTCCTTCCAATAGTCCTCCTTCTCGGCCGGCTGAGGACGTTGAGGAAGGTGAAATTCTTGAGGACGGTGCCGGTGGCCGCGACGACGGCGTTTTGGAAACGAAAGCGGACTCTGGTGCCGAGTCTGGTGAAATTGAAGCTCCTGGAGTTCGCGAACGTTCTGATAAGCGAAATCTGGGACTTTATAGTGACAGTACCATGGATAAGAGCTCAAAGACCTTGGGCAAAGAACTTCGTCGTGATGATGATCCCAGGAGTCCTATTGGGGGTAAGTCTCATAGTGAGGCCGGCTTGCCTCAAAATTCTAGTGCCGAGCCTCGCGAAGAATCAGTTTCCAGAGTTGACCTTGAGGATCATGCCAATGGGAATTTAGAGAAGAGGCGGCATCTGGTATCTGGGTCCCCTTCTAAAGGAGGGGGTCATCGAAAGAAATACTATAGTGAAAATGTGGATGATGATAGAAGCAAATTAGCTAATAAAGAAAAGTCACCCTATAGAAGTAGTGGTGACAGGTATGGTGAAGTGTTGCGTGGCAGGAGCAGATCAGGGTCACATGATCATGTGAGAGAGAGATCTCGTTCCCGTAGTATAGTTGAAGAGGAGGCACCATCTAGAAGAAGATCTCATTCTCGCAGTATGTTAGAAGAGGAAGCTCTTTCTAAAAGGAGACGTTATCATGATCGAGAAATCTCAGTATATGCCGAGAAAAGCAAGGCCGCACACAACTCTGATGATGAAGGTATGGTGAGGGATGATGATGAAAGGGAACACAGTATTAGTTATAGCAGATACTCTGGATTAGATCGCAGTCGAGAGAGAGAGAGGAGTAGGGAGAGGGAGGTGGACAGGGTTCGGAGAAGGGAGAAAGAACTAGAGAGGAACAGGGGCAGGGATCGGAGAAGGGAGAAAGAAAGAGAAAGGAGTAGTGACAGGGATTTGTTTAGGGACAGGAAAAGGGGAATTGGACGTGGTGATAGCACTGAAAGGGTGGTTGATACGGAACGTAGAAGGGAAGAGCGACATAGAAGCAGGGACAGGACAAGGGAGGATGATGTTGATAGGAGCAGGGGCAGGGGCAAGTCTGCTGACAGAGAGAGAGATAGAGTTATGGAGAGGGATTGGGATAGGGATAGGGACAGAGTAACAGACCGGAAATGGGAGAGGCGGGATGATAGATATAGGGACAAGGGTCGAGATATGGAGAGGGAGAGAAATGAAACTGAAAGTGGATATGGAACTCGAGACAAGCATAATCATTCTGGTCAATCAAGGTATGAAGAAAAAGAATATAACCAGGATGGTTCAACAAAATCTGATCAAGCAGAAGTTCAGCTAGAAAGAGATGAAGATGAACAAGGAGATGATGAAGAGATGGTCAGTTTGCAAGTTGCTGATCAGGAAGAGGAAGATCTTAACAGAATTAAGGAGGAAAGTAGGAGGAGAAAGCAAGCAATCTTGGAAAAATATAAAAGTCAGCCGTCGCAGTCCCAGCAAAAGACCGACATACAAATTGAGTCACAGTTACAGCAACCCACTCAATTAGAGGGTCAAAAAGGTCATCTGGATCAATCAACAGGGGTTGCCAAATCCAGAGCAGAAGTTGATGGTGCTAGGAGTTCTGGAGGAGTATATATGGCTGAAGCATTTTCTACTACAGCTCGTCAGAATGGTGCCCCAGGGCTTGGAGAGGGTACTCCAAAGAGTGAAAGCTCTGGTGGCTCAGAACCCAAAAAAGAAAGAGCTGATGGTATTTTATGCGATGATATCTTTGGTGAGACCCCAACTGGAGTTCGAAAATTGGACAAAGGAGATGCTGTACGAATTGAAAGGAGTGGTCTCCGTGACAACTGGGATGATGCAGAAGGGTACTACAGCTACCGGTTTGGGGAGTTACTTGATGGTCGATATGAGATTACTGCTGCTCATGGAAAAGGCGTGTTTTCAACTGTTGTTCGTGCAAAGAACCTTAAGGTTGGTAATGGTGAACCAGAAGAAGTGGCAATTAAGATTATTCGTAGCAATGATACTATGTACAAGGCTGGTATGACTGAGTTGGCCATATTGAAGAAATTAGTAGGTCAAGATCCAGACAATAAGCGCTATTGTGTTCGTTTTCTATCAAGTTTCAAGTATCGAAATCATCTTTGTTTAGTTTTTGAATCTCTGCATATGAATCTTCGTGAGCTTTTAAAGAAGTTTGGACGCAATATTGGTCTGAATCTAACTGCGGTGAGAGTATATGCTAAGCAACTCTTGATTGCATTGAAGCATCTCAAAAACTGTGGTGTTCTTCATTGTGATATAAAGCCAGATAACATGCTGGTAAATGAAGCAAAAAACGTTCTGAAGCTTTGTGATTTTGGTAACGCCATGTTTGCTGGCAAGAATGAAGTTACACCGTACCTTGTGAGCCGATTTTATCGGGCCCCTGAAATAATTCTTGGCTTGCCTTATGATCATCCACTGGATATCTGGTCTGTTGGTTGCTGTTTGTTCGAACTTTATACTGGAAAAGTTCTTTTTCCTGGTGCTACGAACAATGATATGCTACGTCTTCACATGGAATTGAAAGGCCCTTTCCCTAAGAAGATGCTTCGGAAGGCAACATTTACTTATCAAAATTTCGATCAGGATCTGAACTTCCATGCCACAGAAGATGATCCTGTTACAAAAAAGGTTATTAAACGCGTGATTCTCAACATAAAGCCAAAAGATATCGGATCAATGATCGCAGGTTCTCCTGGCGAGGATCCAGATCCCAAGATATTAGCTGATTTTAAAGATCTTTTAGATAAAATGTTTGTGCTGGATCCAGACAAGAGGTTGACAGTATCACAAGGTTTGAATCATCCATTCATCACTGGCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000018 GO:0000228 GO:0000729 GO:0000785 GO:0000792 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006325 GO:0006338 GO:0006355 GO:0006464 GO:0006476 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0008150 GO:0008152 GO:0009117 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010225 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016363 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0019637 GO:0022402 GO:0022607 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0033554 GO:0034399 GO:0034641 GO:0034644 GO:0035601 GO:0035861 GO:0036211 GO:0043044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043596 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045893 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051259 GO:0051260 GO:0051276 GO:0051304 GO:0051716 GO:0055086 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070932 GO:0070933 GO:0071214 GO:0071478 GO:0071482 GO:0071494 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0098732 GO:0104004 GO:1901360 GO:1901363 GO:1901564 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04550 map04550
Pfam Domains
Protein Families
Helicase_C SNF2_N

Protein Analysis

1025

Amino Acids

117.55

Weight (kDa)

8.28

Isoelectric Point (pI)

59.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 706 - 1022 3e-47 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 711 - 921 4.5e-19 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 2930
AccB1I GGYRCC 4 cut(s) 275, 323, 811, 1877
AccB7I CCANNNNNTGG 1 cut(s) 1889
AccII CGCG 8 cut(s) 25, 42, 138, 161, 288, 360, 528, 2895
AclI AACGTT 2 cut(s) 364, 2547
AcoI YGGCCR 4 cut(s) 156, 233, 283, 2262
AcsI RAATTY 4 cut(s) 261, 508, 574, 2827
AcuI CTGAAG 2 cut(s) 1866, 2573
AcyI GRCGYC 1 cut(s) 60
AfaI GTAC 6 cut(s) 403, 1900, 2025, 2075, 2240, 2609
AfeI AGCGCT 1 cut(s) 2306
AfiI CCNNNNNNNGG 5 cut(s) 473, 617, 1363, 1889, 2092
AflII CTTAAG 1 cut(s) 2174
AflIII ACRYGT 1 cut(s) 2893
AgeI ACCGGT 1 cut(s) 2085
AjiI CACGTC 1 cut(s) 1175
AjnI CCWGG 6 cut(s) 349, 458, 1500, 1882, 2731, 2947
AjuI GAANNNNNNNTTGG 2 cut(s) 2631, 2663
Alw21I GWGCWC 1 cut(s) 419
Alw26I GTCTC 6 cut(s) 213, 486, 868, 1443, 1976, 2048
AlwNI CAGNNNCTG 1 cut(s) 2842
Ama87I CYCGRG 1 cut(s) 1446
Aor51HI AGCGCT 1 cut(s) 2306
AoxI GGCC 8 cut(s) 156, 233, 283, 492, 921, 2262, 2631, 2779
ApaI GGGCCC 1 cut(s) 2635
ApeKI GCWGC 2 cut(s) 126, 2126
ApoI RAATTY 4 cut(s) 261, 508, 574, 2827
AsiGI ACCGGT 1 cut(s) 2085
Asp700I GAANNNNTTC 1 cut(s) 2643
AspLEI GCGC 3 cut(s) 81, 138, 2307
AspS9I GGNCC 4 cut(s) 606, 2631, 2632, 2780
AsuII TTCGAA 2 cut(s) 1999, 2703
AvaI CYCGRG 1 cut(s) 1446
AvaII GGWCC 1 cut(s) 606
BaeGI GKGCMC 2 cut(s) 1882, 2635
BalI TGGCCA 1 cut(s) 2264
BamHI GGATCC 2 cut(s) 2956, 3016
BanI GGYRCC 4 cut(s) 275, 323, 811, 1877
BanII GRGCYC 2 cut(s) 419, 2635
BbsI GAAGAC 2 cut(s) 63, 2753
Bbv12I GWGCWC 1 cut(s) 419
BbvCI CCTCAGC 1 cut(s) 240
BbvI GCAGC 2 cut(s) 138, 2113
BccI CCATC 6 cut(s) 823, 1499, 1573, 1805, 1946, 2099
BceAI ACGGC 2 cut(s) 310, 1669
BciT130I CCWGG 6 cut(s) 351, 460, 1502, 1884, 2733, 2949
BclI TGATCA 4 cut(s) 763, 1522, 1600, 2662
BcoDI GTCTC 6 cut(s) 213, 486, 868, 1443, 1976, 2048
BfaI CTAG 5 cut(s) 513, 819, 1079, 1541, 1818
BfmI CTRYAG 4 cut(s) 643, 700, 1860, 2077
BfoI RGCGCY 2 cut(s) 82, 2308
BfrI CTTAAG 1 cut(s) 2174
BfuAI ACCTGC 1 cut(s) 2930
BglII AGATCT 4 cut(s) 779, 827, 1615, 2989
BisI GCNGC 9 cut(s) 40, 127, 156, 159, 194, 286, 590, 924, 2127
BlpI GCTNAGC 1 cut(s) 2451
BlsI GCNGC 9 cut(s) 41, 128, 157, 160, 195, 287, 591, 925, 2128
Bme1390I CCNGG 6 cut(s) 351, 460, 1502, 1884, 2733, 2949
Bme18I GGWCC 1 cut(s) 606
BmeT110I CYCGRG 1 cut(s) 1446
BmgBI CACGTC 1 cut(s) 1175
BmgT120I GGNCC 4 cut(s) 606, 2631, 2632, 2780
BmrFI CCNGG 6 cut(s) 351, 460, 1502, 1884, 2733, 2949
BmrI ACTGGG 1 cut(s) 2065
BmsI GCATC 5 cut(s) 601, 2008, 2053, 2485, 2787
BmuI ACTGGG 1 cut(s) 2065
BoxI GACNNNNGTC 1 cut(s) 1395
BpiI GAAGAC 2 cut(s) 63, 2753
BpmI CTGGAG 3 cut(s) 372, 1848, 2013
Bpu10I CCTNAGC 1 cut(s) 240
Bpu1102I GCTNAGC 1 cut(s) 2451
Bpu14I TTCGAA 2 cut(s) 1999, 2703
BpuEI CTTGAG 2 cut(s) 287, 575
BsaBI GATNNNNATC 3 cut(s) 453, 2838, 2961
BsaHI GRCGYC 1 cut(s) 60
BsaI GGTCTC 2 cut(s) 1976, 2048
BsaJI CCNNGG 6 cut(s) 159, 405, 426, 458, 1882, 1883
BsaWI WCCGGW 2 cut(s) 1356, 2085
BsaXI ACNNNNNCTCC 2 cut(s) 2007, 2037
Bsc4I CCNNNNNNNGG 5 cut(s) 473, 617, 1363, 1889, 2092
Bse118I RCCGGY 4 cut(s) 235, 278, 494, 2085
Bse1I ACTGG 5 cut(s) 1996, 2060, 2676, 2719, 3073
Bse3DI GCAATG 1 cut(s) 2233
Bse8I GATNNNNATC 3 cut(s) 453, 2838, 2961
BseBI CCWGG 6 cut(s) 351, 460, 1502, 1884, 2733, 2949
BseDI CCNNGG 6 cut(s) 159, 405, 426, 458, 1882, 1883
BseGI GGATG 8 cut(s) 664, 964, 1261, 1381, 1510, 2065, 2665, 3055
BseJI GATNNNNATC 3 cut(s) 453, 2838, 2961
BseLI CCNNNNNNNGG 5 cut(s) 473, 617, 1363, 1889, 2092
BseMI GCAATG 1 cut(s) 2233
BseMII CTCAG 4 cut(s) 231, 912, 1941, 2247
BseNI ACTGG 5 cut(s) 1996, 2060, 2676, 2719, 3073
BseRI GAGGAG 7 cut(s) 171, 174, 177, 821, 1045, 1660, 1845
BseSI GKGCMC 2 cut(s) 1882, 2635
BseX3I CGGCCG 2 cut(s) 156, 233
BseXI GCAGC 2 cut(s) 138, 2113
BseYI CCCAGC 1 cut(s) 1695
Bsh1236I CGCG 8 cut(s) 25, 42, 138, 161, 288, 360, 528, 2895
Bsh1285I CGRYCG 2 cut(s) 159, 236
BshFI GGCC 8 cut(s) 158, 235, 285, 494, 923, 2264, 2633, 2781
BshNI GGYRCC 4 cut(s) 275, 323, 811, 1877
BshTI ACCGGT 1 cut(s) 2085
BsiEI CGRYCG 2 cut(s) 159, 236
BsiHKAI GWGCWC 1 cut(s) 419
BsiHKCI CYCGRG 1 cut(s) 1446
BsiSI CCGG 6 cut(s) 6, 236, 279, 495, 1357, 2086
BslFI GGGAC 7 cut(s) 399, 592, 1166, 1253, 1355, 1403, 1678
BslI CCNNNNNNNGG 5 cut(s) 473, 617, 1363, 1889, 2092
BsmAI GTCTC 6 cut(s) 213, 486, 868, 1443, 1976, 2048
BsmBI CGTCTC 1 cut(s) 868
BsmFI GGGAC 7 cut(s) 399, 592, 1166, 1253, 1355, 1403, 1678
BsnI GGCC 8 cut(s) 158, 235, 285, 494, 923, 2264, 2633, 2781
Bso31I GGTCTC 2 cut(s) 1976, 2048
BsoBI CYCGRG 1 cut(s) 1446
Bsp119I TTCGAA 2 cut(s) 1999, 2703
Bsp120I GGGCCC 1 cut(s) 2631
Bsp1286I GDGCHC 3 cut(s) 419, 1882, 2635
Bsp1407I TGTACA 1 cut(s) 2238
Bsp1720I GCTNAGC 1 cut(s) 2451
Bsp19I CCATGG 1 cut(s) 405
Bsp68I TCGCGA 2 cut(s) 360, 528
BspANI GGCC 8 cut(s) 158, 235, 285, 494, 923, 2264, 2633, 2781
BspCNI CTCAG 4 cut(s) 232, 911, 1940, 2248
BspFNI CGCG 8 cut(s) 25, 42, 138, 161, 288, 360, 528, 2895
BspHI TCATGA 1 cut(s) 883
BspMI ACCTGC 1 cut(s) 2930
BspQI GCTCTTC 1 cut(s) 1215
BspT104I TTCGAA 2 cut(s) 1999, 2703
BspT107I GGYRCC 4 cut(s) 275, 323, 811, 1877
BspTI CTTAAG 1 cut(s) 2174
BspTNI GGTCTC 2 cut(s) 1976, 2048
BsrDI GCAATG 1 cut(s) 2233
BsrFI RCCGGY 4 cut(s) 235, 278, 494, 2085
BsrGI TGTACA 1 cut(s) 2238
BsrI ACTGG 5 cut(s) 1996, 2060, 2676, 2719, 3073
BssAI RCCGGY 4 cut(s) 235, 278, 494, 2085
BssECI CCNNGG 6 cut(s) 159, 405, 426, 458, 1882, 1883
BssNI GRCGYC 1 cut(s) 60
BssT1I CCWWGG 2 cut(s) 405, 426
Bst2UI CCWGG 6 cut(s) 351, 460, 1502, 1884, 2733, 2949
Bst6I CTCTTC 7 cut(s) 138, 578, 798, 846, 1215, 1569, 1602
BstACI GRCGYC 1 cut(s) 60
BstAFI CTTAAG 1 cut(s) 2174
BstAUI TGTACA 1 cut(s) 2238
BstBI TTCGAA 2 cut(s) 1999, 2703
BstC8I GCNNGC 7 cut(s) 32, 237, 496, 500, 1656, 2587, 2654
BstDEI CTNAG 6 cut(s) 240, 898, 1927, 2256, 2451, 2790
BstDSI CCRYGG 2 cut(s) 159, 405
BstENI CCTNNNNNAGG 1 cut(s) 615
BstF5I GGATG 8 cut(s) 664, 964, 1261, 1381, 1510, 2065, 2665, 3055
BstFNI CGCG 8 cut(s) 25, 42, 138, 161, 288, 360, 528, 2895
BstH2I RGCGCY 2 cut(s) 82, 2308
BstHHI GCGC 3 cut(s) 81, 138, 2307
BstMAI GTCTC 6 cut(s) 213, 486, 868, 1443, 1976, 2048
BstMCI CGRYCG 2 cut(s) 159, 236
BstMWI GCNNNNNNNGC 9 cut(s) 31, 36, 85, 126, 135, 294, 1696, 1923, 2582
BstNI CCWGG 6 cut(s) 351, 460, 1502, 1884, 2733, 2949
BstNSI RCATGY 1 cut(s) 2527
BstPAI GACNNNNGTC 1 cut(s) 1395
BstSCI CCNGG 6 cut(s) 349, 458, 1500, 1882, 2731, 2947
BstSFI CTRYAG 4 cut(s) 643, 700, 1860, 2077
BstSLI GKGCMC 2 cut(s) 1882, 2635
BstUI CGCG 8 cut(s) 25, 42, 138, 161, 288, 360, 528, 2895
BstV1I GCAGC 2 cut(s) 138, 2113
BstV2I GAAGAC 2 cut(s) 63, 2753
BstX2I RGATCY 9 cut(s) 779, 827, 1615, 2290, 2839, 2956, 2962, 2989, 3016
BstYI RGATCY 9 cut(s) 779, 827, 1615, 2290, 2839, 2956, 2962, 2989, 3016
BstZI CGGCCG 2 cut(s) 156, 233
BsuRI GGCC 8 cut(s) 158, 235, 285, 494, 923, 2264, 2633, 2781
BtgI CCRYGG 2 cut(s) 159, 405
BtgZI GCGATG 1 cut(s) 1980
BtrI CACGTC 1 cut(s) 1175
BtsCI GGATG 8 cut(s) 664, 964, 1261, 1381, 1510, 2065, 2665, 3055
BtsIMutI CAGTG 3 cut(s) 1185, 2669, 3066
BtuMI TCGCGA 2 cut(s) 360, 528
BveI ACCTGC 1 cut(s) 2930
Cac8I GCNNGC 7 cut(s) 32, 237, 496, 500, 1656, 2587, 2654
CaiI CAGNNNCTG 1 cut(s) 2842
CciI TCATGA 1 cut(s) 883
CciNI GCGGCCGC 1 cut(s) 156
CfoI GCGC 3 cut(s) 81, 138, 2307
Cfr10I RCCGGY 4 cut(s) 235, 278, 494, 2085
Cfr13I GGNCC 4 cut(s) 606, 2631, 2632, 2780
Cfr42I CCGCGG 1 cut(s) 162
CseI GACGC 3 cut(s) 14, 68, 2418
Csp6I GTAC 6 cut(s) 402, 1899, 2024, 2074, 2239, 2608
CspAI ACCGGT 1 cut(s) 2085
CspCI CAANNNNNGTGG 2 cut(s) 2470, 2505
CviQI GTAC 6 cut(s) 402, 1899, 2024, 2074, 2239, 2608
DdeI CTNAG 6 cut(s) 240, 898, 1927, 2256, 2451, 2790
DraI TTTAAA 2 cut(s) 2397, 2986
EaeI YGGCCR 4 cut(s) 156, 233, 283, 2262
EagI CGGCCG 2 cut(s) 156, 233
Eam1104I CTCTTC 7 cut(s) 138, 578, 798, 846, 1215, 1569, 1602
EarI CTCTTC 7 cut(s) 138, 578, 798, 846, 1215, 1569, 1602
EciI GGCGGA 1 cut(s) 180
Ecl136II GAGCTC 1 cut(s) 417
EclXI CGGCCG 2 cut(s) 156, 233
Eco130I CCWWGG 2 cut(s) 405, 426
Eco24I GRGCYC 2 cut(s) 419, 2635
Eco31I GGTCTC 2 cut(s) 1976, 2048
Eco32I GATATC 4 cut(s) 172, 1972, 2677, 2923
Eco47I GGWCC 1 cut(s) 606
Eco47III AGCGCT 1 cut(s) 2306
Eco52I CGGCCG 2 cut(s) 156, 233
Eco53kI GAGCTC 1 cut(s) 417
Eco57I CTGAAG 2 cut(s) 1866, 2573
Eco88I CYCGRG 1 cut(s) 1446
EcoICRI GAGCTC 1 cut(s) 417
EcoNI CCTNNNNNAGG 1 cut(s) 615
EcoO109I RGGNCCY 3 cut(s) 606, 2632, 2780
EcoRII CCWGG 6 cut(s) 349, 458, 1500, 1882, 2731, 2947
EcoRV GATATC 4 cut(s) 172, 1972, 2677, 2923
EcoT14I CCWWGG 2 cut(s) 405, 426
EcoT38I GRGCYC 2 cut(s) 419, 2635
ErhI CCWWGG 2 cut(s) 405, 426
Esp3I CGTCTC 1 cut(s) 868
FalI AAGNNNNNCTT 2 cut(s) 2444, 2476
FaqI GGGAC 7 cut(s) 399, 592, 1166, 1253, 1355, 1403, 1678
FauI CCCGC 2 cut(s) 154, 1365
FauNDI CATATG 1 cut(s) 2376
FbaI TGATCA 4 cut(s) 763, 1522, 1600, 2662
Fnu4HI GCNGC 9 cut(s) 40, 127, 156, 159, 194, 286, 590, 924, 2127
FokI GGATG 8 cut(s) 671, 971, 1268, 1388, 1517, 2072, 2652, 3042
FriOI GRGCYC 2 cut(s) 419, 2635
Fsp4HI GCNGC 9 cut(s) 40, 127, 156, 159, 194, 286, 590, 924, 2127
FspBI CTAG 5 cut(s) 513, 819, 1079, 1541, 1818
GlaI GCGC 3 cut(s) 80, 137, 2306
GluI GCNGC 9 cut(s) 40, 127, 156, 159, 194, 286, 590, 924, 2127
GsaI CCCAGC 1 cut(s) 1699
GsuI CTGGAG 3 cut(s) 372, 1848, 2013
HaeII RGCGCY 2 cut(s) 82, 2308
HaeIII GGCC 8 cut(s) 158, 235, 285, 494, 923, 2264, 2633, 2781
HapII CCGG 6 cut(s) 6, 236, 279, 495, 1357, 2086
HgaI GACGC 3 cut(s) 14, 68, 2418
HhaI GCGC 3 cut(s) 81, 138, 2307
Hin1I GRCGYC 1 cut(s) 60
Hin6I GCGC 3 cut(s) 79, 136, 2305
HinP1I GCGC 3 cut(s) 79, 136, 2305
HincII GTYRAC 2 cut(s) 550, 3033
HindII GTYRAC 2 cut(s) 550, 3033
HindIII AAGCTT 1 cut(s) 2555
HpaII CCGG 6 cut(s) 6, 236, 279, 495, 1357, 2086
Hpy166II GTNNAC 4 cut(s) 550, 1051, 2192, 3033
Hpy8I GTNNAC 4 cut(s) 550, 1051, 2192, 3033
Hpy99I CGWCG 9 cut(s) 14, 30, 56, 59, 62, 293, 296, 447, 1690
HpyCH4IV ACGT 7 cut(s) 246, 364, 877, 1174, 1210, 2547, 2758
HpyCH4V TGCA 5 cut(s) 1591, 2066, 2165, 2374, 2468
HpyF10VI GCNNNNNNNGC 9 cut(s) 31, 36, 85, 126, 135, 294, 1696, 1923, 2582
HpyF3I CTNAG 6 cut(s) 240, 898, 1927, 2256, 2451, 2790
HpySE526I ACGT 7 cut(s) 246, 364, 877, 1174, 1210, 2547, 2758
Hsp92I GRCGYC 1 cut(s) 60
HspAI GCGC 3 cut(s) 79, 136, 2305
KflI GGGWCCC 1 cut(s) 606
KroI GCCGGC 2 cut(s) 235, 494
KroNI GCCGGC 2 cut(s) 237, 496
Ksp22I TGATCA 4 cut(s) 763, 1522, 1600, 2662
KspI CCGCGG 1 cut(s) 162
LguI GCTCTTC 1 cut(s) 1215
LmnI GCTCC 4 cut(s) 184, 352, 744, 1269
Lsp1109I GCAGC 2 cut(s) 138, 2113
LweI GCATC 5 cut(s) 601, 2008, 2053, 2485, 2787
MaeI CTAG 5 cut(s) 513, 819, 1079, 1541, 1818
MaeII ACGT 7 cut(s) 246, 364, 877, 1174, 1210, 2547, 2758
MflI RGATCY 9 cut(s) 779, 827, 1615, 2290, 2839, 2956, 2962, 2989, 3016
MhlI GDGCHC 3 cut(s) 419, 1882, 2635
MlsI TGGCCA 1 cut(s) 2264
MluI ACGCGT 1 cut(s) 2893
MluNI TGGCCA 1 cut(s) 2264
MlyI GAGTC 4 cut(s) 311, 338, 472, 1730
MmeI TCCRAC 1 cut(s) 75
Mox20I TGGCCA 1 cut(s) 2264
MroNI GCCGGC 2 cut(s) 235, 494
MroXI GAANNNNTTC 1 cut(s) 2643
MscI TGGCCA 1 cut(s) 2264
MseI TTAA 7 cut(s) 1620, 1629, 2175, 2211, 2396, 2889, 2985
MslI CAYNNNNRTG 2 cut(s) 567, 765
Msp20I TGGCCA 1 cut(s) 2264
MspA1I CMGCKG 1 cut(s) 161
MspCI CTTAAG 1 cut(s) 2174
MspI CCGG 6 cut(s) 6, 236, 279, 495, 1357, 2086
MspR9I CCNGG 6 cut(s) 351, 460, 1502, 1884, 2733, 2949
MvaI CCWGG 6 cut(s) 351, 460, 1502, 1884, 2733, 2949
MvnI CGCG 8 cut(s) 25, 42, 138, 161, 288, 360, 528, 2895
MwoI GCNNNNNNNGC 9 cut(s) 31, 36, 85, 126, 135, 294, 1696, 1923, 2582
NaeI GCCGGC 2 cut(s) 237, 496
NcoI CCATGG 1 cut(s) 405
NdeI CATATG 1 cut(s) 2376
NgoMIV GCCGGC 2 cut(s) 235, 494
NmeAIII GCCGAG 5 cut(s) 88, 211, 352, 544, 934
NmuCI GTSAC 9 cut(s) 92, 113, 395, 693, 713, 756, 1133, 1722, 2048
NotI GCGGCCGC 1 cut(s) 156
NruI TCGCGA 2 cut(s) 360, 528
NspI RCATGY 1 cut(s) 2527
NspV TTCGAA 2 cut(s) 1999, 2703
PaeR7I CTCGAG 1 cut(s) 1446
PagI TCATGA 1 cut(s) 883
PasI CCCWGGG 1 cut(s) 1883
PciSI GCTCTTC 1 cut(s) 1215
PcsI WCGNNNNNNNCGW 1 cut(s) 60
PdiI GCCGGC 2 cut(s) 237, 496
PdmI GAANNNNTTC 1 cut(s) 2643
PfeI GAWTC 7 cut(s) 20, 533, 2366, 2380, 2425, 2899, 3052
PflMI CCANNNNNTGG 1 cut(s) 1889
PfoI TCCNGGA 1 cut(s) 349
PinAI ACCGGT 1 cut(s) 2085
PkrI GCNGC 9 cut(s) 41, 128, 157, 160, 195, 287, 591, 925, 2128
PleI GAGTC 4 cut(s) 311, 337, 471, 1729
PpsI GAGTC 4 cut(s) 311, 337, 471, 1729
PpuMI RGGWCCY 1 cut(s) 606
PshAI GACNNNNGTC 1 cut(s) 1395
Psp124BI GAGCTC 1 cut(s) 419
Psp1406I AACGTT 2 cut(s) 364, 2547
Psp5II RGGWCCY 1 cut(s) 606
Psp6I CCWGG 6 cut(s) 349, 458, 1500, 1882, 2731, 2947
PspFI CCCAGC 1 cut(s) 1695
PspGI CCWGG 6 cut(s) 349, 458, 1500, 1882, 2731, 2947
PspOMI GGGCCC 1 cut(s) 2631
PspPI GGNCC 4 cut(s) 606, 2631, 2632, 2780
PspPPI RGGWCCY 1 cut(s) 606
PstNI CAGNNNCTG 1 cut(s) 2842
PsuI RGATCY 9 cut(s) 779, 827, 1615, 2290, 2839, 2956, 2962, 2989, 3016
RruI TCGCGA 2 cut(s) 360, 528
RsaI GTAC 6 cut(s) 403, 1900, 2025, 2075, 2240, 2609
RsaNI GTAC 6 cut(s) 402, 1899, 2024, 2074, 2239, 2608
RseI CAYNNNNRTG 2 cut(s) 567, 765
SacI GAGCTC 1 cut(s) 419
SacII CCGCGG 1 cut(s) 162
SapI GCTCTTC 1 cut(s) 1215
SaqAI TTAA 7 cut(s) 1620, 1629, 2175, 2211, 2396, 2889, 2985
SatI GCNGC 9 cut(s) 40, 127, 156, 159, 194, 286, 590, 924, 2127
Sau96I GGNCC 4 cut(s) 606, 2631, 2632, 2780
SchI GAGTC 4 cut(s) 311, 338, 472, 1730
ScrFI CCNGG 6 cut(s) 351, 460, 1502, 1884, 2733, 2949
SduI GDGCHC 3 cut(s) 419, 1882, 2635
SfaNI GCATC 5 cut(s) 601, 2008, 2053, 2485, 2787
SfcI CTRYAG 4 cut(s) 643, 700, 1860, 2077
Sfr274I CTCGAG 1 cut(s) 1446
Sfr303I CCGCGG 1 cut(s) 162
SfuI TTCGAA 2 cut(s) 1999, 2703
SgrBI CCGCGG 1 cut(s) 162
SinI GGWCC 1 cut(s) 606
SlaI CTCGAG 1 cut(s) 1446
SmiMI CAYNNNNRTG 2 cut(s) 567, 765
SmlI CTYRAG 4 cut(s) 266, 554, 1446, 2174
SmoI CTYRAG 4 cut(s) 266, 554, 1446, 2174
SspI AATATT 1 cut(s) 2416
SspMI CTAG 5 cut(s) 513, 819, 1079, 1541, 1818
SstI GAGCTC 1 cut(s) 419
StyD4I CCNGG 6 cut(s) 349, 458, 1500, 1882, 2731, 2947
StyI CCWWGG 2 cut(s) 405, 426
TaiI ACGT 7 cut(s) 249, 367, 880, 1177, 1213, 2550, 2761
TaqII GACCGA 1 cut(s) 1721
TatI WGTACW 1 cut(s) 2238
TauI GCSGC 7 cut(s) 42, 158, 161, 196, 288, 592, 926
TfiI GAWTC 7 cut(s) 20, 533, 2366, 2380, 2425, 2899, 3052
Tru1I TTAA 7 cut(s) 1620, 1629, 2175, 2211, 2396, 2889, 2985
Tru9I TTAA 7 cut(s) 1620, 1629, 2175, 2211, 2396, 2889, 2985
TscAI CASTG 3 cut(s) 1192, 2676, 3073
TseFI GTSAC 9 cut(s) 92, 113, 395, 693, 713, 756, 1133, 1722, 2048
TseI GCWGC 2 cut(s) 126, 2126
Tsp45I GTSAC 9 cut(s) 92, 113, 395, 693, 713, 756, 1133, 1722, 2048
TspGWI ACGGA 2 cut(s) 1220, 2036
TspRI CASTG 3 cut(s) 1192, 2676, 3073
Van91I CCANNNNNTGG 1 cut(s) 1889
Vha464I CTTAAG 1 cut(s) 2174
VpaK11BI GGWCC 1 cut(s) 606
XagI CCTNNNNNAGG 1 cut(s) 615
XapI RAATTY 4 cut(s) 261, 508, 574, 2827
XbaI TCTAGA 1 cut(s) 818
XceI RCATGY 1 cut(s) 2527
XcmI CCANNNNNNNNNTGG 1 cut(s) 2676
XhoI CTCGAG 1 cut(s) 1446
XmnI GAANNNNTTC 1 cut(s) 2643
XspI CTAG 5 cut(s) 513, 819, 1079, 1541, 1818
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.