helix loop helix domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G31050 AT1G31050 AT1G31050 AT1G31050 AT1G31050 AT1G31050 AT1G31050 AT1G31050 |
| fragaria_vesca | FvH4_4g36070 FvH4_4g36070 FvH4_4g36070 FvH4_4g36070 FvH4_4g36070 FvH4_4g36070 FvH4_4g36070 FvH4_4g36070 FvH4_4g36070 |
| malus_domestica | MD13G1012600.v1.1 MD16G1009300.v1.1 |
| prunus_persica | Prupe.1G341300_v2.0.a1 Prupe.1G341300_v2.0.a1 Prupe.1G341300_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr4g0445691 |
| rosa_laevigata | RLG00000005716 |
| rosa_roxburghii | Rroxscaffold_5G00386180 |
| rosa_rugosa | Rorug04G0364700 Rorug04G0364800 Rorug04G0364900 |
| rosa_samantha | Rh4AG425700 Rh4CG452800 Rh4DG434000 |
| rosa_wichuraiana | Rw4G036470 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 493 |
| AccB1I | GGYRCC | 3 cut(s) | 156, 1237, 1489 |
| AccIII | TCCGGA | 1 cut(s) | 881 |
| AciI | CCGC | 3 cut(s) | 117, 1125, 1403 |
| AcoI | YGGCCR | 2 cut(s) | 149, 838 |
| AcsI | RAATTY | 1 cut(s) | 934 |
| AcuI | CTGAAG | 3 cut(s) | 1185, 1299, 1487 |
| AfaI | GTAC | 8 cut(s) | 229, 479, 911, 1159, 1320, 1340, 1365, 1504 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1366, 1459, 1486 |
| AhlI | ACTAGT | 1 cut(s) | 286 |
| AjnI | CCWGG | 1 cut(s) | 653 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 680, 712 |
| AluBI | AGCT | 8 cut(s) | 8, 107, 113, 554, 560, 773, 870, 1313 |
| AluI | AGCT | 8 cut(s) | 8, 107, 113, 554, 560, 773, 870, 1313 |
| Alw26I | GTCTC | 2 cut(s) | 358, 1293 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 11, 107, 654, 1563 |
| Aor13HI | TCCGGA | 1 cut(s) | 881 |
| AoxI | GGCC | 6 cut(s) | 149, 794, 838, 1063, 1269, 1477 |
| ApoI | RAATTY | 1 cut(s) | 934 |
| AseI | ATTAAT | 1 cut(s) | 609 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1332 |
| AspLEI | GCGC | 1 cut(s) | 667 |
| AspS9I | GGNCC | 2 cut(s) | 657, 1270 |
| AsuC2I | CCSGG | 1 cut(s) | 1511 |
| AsuHPI | GGTGA | 3 cut(s) | 83, 986, 1442 |
| AsuII | TTCGAA | 1 cut(s) | 591 |
| AvaII | GGWCC | 1 cut(s) | 657 |
| BalI | TGGCCA | 1 cut(s) | 840 |
| BamHI | GGATCC | 2 cut(s) | 878, 1411 |
| BanI | GGYRCC | 3 cut(s) | 156, 1237, 1489 |
| BbsI | GAAGAC | 1 cut(s) | 1400 |
| BbvCI | CCTCAGC | 1 cut(s) | 263 |
| BccI | CCATC | 2 cut(s) | 59, 976 |
| BceAI | ACGGC | 3 cut(s) | 136, 961, 1284 |
| BciT130I | CCWGG | 1 cut(s) | 655 |
| BclI | TGATCA | 3 cut(s) | 88, 292, 1029 |
| BcnI | CCSGG | 1 cut(s) | 1511 |
| BcoDI | GTCTC | 2 cut(s) | 358, 1293 |
| BcuI | ACTAGT | 1 cut(s) | 286 |
| BfaI | CTAG | 3 cut(s) | 287, 644, 930 |
| BfmI | CTRYAG | 3 cut(s) | 108, 555, 858 |
| BfuAI | ACCTGC | 1 cut(s) | 493 |
| BmcAI | AGTACT | 2 cut(s) | 229, 1320 |
| Bme1390I | CCNGG | 2 cut(s) | 655, 1511 |
| Bme18I | GGWCC | 1 cut(s) | 657 |
| BmgT120I | GGNCC | 2 cut(s) | 657, 1270 |
| BmiI | GGNNCC | 5 cut(s) | 158, 880, 1239, 1413, 1491 |
| BmrFI | CCNGG | 2 cut(s) | 655, 1511 |
| BmsI | GCATC | 4 cut(s) | 430, 581, 888, 1221 |
| BpiI | GAAGAC | 1 cut(s) | 1400 |
| BpmI | CTGGAG | 1 cut(s) | 795 |
| Bpu10I | CCTNAGC | 2 cut(s) | 263, 1188 |
| Bpu14I | TTCGAA | 1 cut(s) | 591 |
| BpuEI | CTTGAG | 1 cut(s) | 696 |
| BpuMI | CCSGG | 1 cut(s) | 1511 |
| BsaBI | GATNNNNATC | 1 cut(s) | 87 |
| BsaJI | CCNNGG | 3 cut(s) | 152, 1415, 1509 |
| BsaWI | WCCGGW | 1 cut(s) | 881 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 173, 203, 327, 357 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1366, 1459, 1486 |
| Bse118I | RCCGGY | 1 cut(s) | 122 |
| Bse1I | ACTGG | 4 cut(s) | 40, 80, 225, 1547 |
| Bse3DI | GCAATG | 1 cut(s) | 660 |
| Bse8I | GATNNNNATC | 1 cut(s) | 87 |
| BseAI | TCCGGA | 1 cut(s) | 881 |
| BseBI | CCWGG | 1 cut(s) | 655 |
| BseDI | CCNNGG | 3 cut(s) | 152, 1415, 1509 |
| BseGI | GGATG | 3 cut(s) | 217, 449, 917 |
| BseJI | GATNNNNATC | 1 cut(s) | 87 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1366, 1459, 1486 |
| BseMI | GCAATG | 1 cut(s) | 660 |
| BseMII | CTCAG | 1 cut(s) | 277 |
| BseNI | ACTGG | 4 cut(s) | 40, 80, 225, 1547 |
| BsgI | GTGCAG | 1 cut(s) | 747 |
| BshFI | GGCC | 6 cut(s) | 151, 796, 840, 1065, 1271, 1479 |
| BshNI | GGYRCC | 3 cut(s) | 156, 1237, 1489 |
| BsiSI | CCGG | 3 cut(s) | 123, 882, 1511 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1366, 1459, 1486 |
| BsmAI | GTCTC | 2 cut(s) | 358, 1293 |
| BsnI | GGCC | 6 cut(s) | 151, 796, 840, 1065, 1271, 1479 |
| Bsp119I | TTCGAA | 1 cut(s) | 591 |
| Bsp13I | TCCGGA | 1 cut(s) | 881 |
| Bsp19I | CCATGG | 1 cut(s) | 1415 |
| BspACI | CCGC | 3 cut(s) | 117, 1125, 1403 |
| BspANI | GGCC | 6 cut(s) | 151, 796, 840, 1065, 1271, 1479 |
| BspCNI | CTCAG | 1 cut(s) | 276 |
| BspEI | TCCGGA | 1 cut(s) | 881 |
| BspHI | TCATGA | 2 cut(s) | 85, 415 |
| BspLI | GGNNCC | 5 cut(s) | 158, 880, 1239, 1413, 1491 |
| BspMAI | CTGCAG | 3 cut(s) | 112, 559, 862 |
| BspMI | ACCTGC | 1 cut(s) | 493 |
| BspQI | GCTCTTC | 1 cut(s) | 1463 |
| BspT104I | TTCGAA | 1 cut(s) | 591 |
| BspT107I | GGYRCC | 3 cut(s) | 156, 1237, 1489 |
| BsrDI | GCAATG | 1 cut(s) | 660 |
| BsrFI | RCCGGY | 1 cut(s) | 122 |
| BsrI | ACTGG | 4 cut(s) | 40, 80, 225, 1547 |
| BssAI | RCCGGY | 1 cut(s) | 122 |
| BssECI | CCNNGG | 3 cut(s) | 152, 1415, 1509 |
| BssT1I | CCWWGG | 1 cut(s) | 1415 |
| Bst2UI | CCWGG | 1 cut(s) | 655 |
| Bst4CI | ACNGT | 4 cut(s) | 521, 728, 926, 962 |
| Bst6I | CTCTTC | 5 cut(s) | 61, 202, 919, 1093, 1463 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 107 |
| BstBI | TTCGAA | 1 cut(s) | 591 |
| BstC8I | GCNNGC | 4 cut(s) | 124, 570, 974, 1236 |
| BstDEI | CTNAG | 2 cut(s) | 263, 1188 |
| BstDSI | CCRYGG | 2 cut(s) | 152, 1415 |
| BstF5I | GGATG | 3 cut(s) | 217, 449, 917 |
| BstHHI | GCGC | 1 cut(s) | 667 |
| BstMAI | GTCTC | 2 cut(s) | 358, 1293 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 107, 110, 113, 116, 119, 175, 770, 793 |
| BstNI | CCWGG | 1 cut(s) | 655 |
| BstNSI | RCATGY | 1 cut(s) | 572 |
| BstSCI | CCNGG | 2 cut(s) | 653, 1509 |
| BstSFI | CTRYAG | 3 cut(s) | 108, 555, 858 |
| BstV2I | GAAGAC | 1 cut(s) | 1400 |
| BstX2I | RGATCY | 3 cut(s) | 878, 1411, 1462 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 78 |
| BstYI | RGATCY | 3 cut(s) | 878, 1411, 1462 |
| BsuRI | GGCC | 6 cut(s) | 151, 796, 840, 1065, 1271, 1479 |
| BtgI | CCRYGG | 2 cut(s) | 152, 1415 |
| BtgZI | GCGATG | 1 cut(s) | 219 |
| BtsCI | GGATG | 3 cut(s) | 217, 449, 917 |
| BtsIMutI | CAGTG | 1 cut(s) | 931 |
| BveI | ACCTGC | 1 cut(s) | 493 |
| Cac8I | GCNNGC | 4 cut(s) | 124, 570, 974, 1236 |
| CaiI | CAGNNNCTG | 4 cut(s) | 11, 107, 654, 1563 |
| CciI | TCATGA | 2 cut(s) | 85, 415 |
| CfoI | GCGC | 1 cut(s) | 667 |
| Cfr10I | RCCGGY | 1 cut(s) | 122 |
| Cfr13I | GGNCC | 2 cut(s) | 657, 1270 |
| CseI | GACGC | 1 cut(s) | 370 |
| CsiI | ACCWGGT | 1 cut(s) | 653 |
| Csp6I | GTAC | 8 cut(s) | 228, 478, 910, 1158, 1319, 1339, 1364, 1503 |
| CviQI | GTAC | 8 cut(s) | 228, 478, 910, 1158, 1319, 1339, 1364, 1503 |
| DdeI | CTNAG | 2 cut(s) | 263, 1188 |
| EaeI | YGGCCR | 2 cut(s) | 149, 838 |
| Eam1104I | CTCTTC | 5 cut(s) | 61, 202, 919, 1093, 1463 |
| EarI | CTCTTC | 5 cut(s) | 61, 202, 919, 1093, 1463 |
| Eco130I | CCWWGG | 1 cut(s) | 1415 |
| Eco147I | AGGCCT | 2 cut(s) | 1065, 1479 |
| Eco47I | GGWCC | 1 cut(s) | 657 |
| Eco57I | CTGAAG | 3 cut(s) | 1185, 1299, 1487 |
| EcoRII | CCWGG | 1 cut(s) | 653 |
| EcoT14I | CCWWGG | 1 cut(s) | 1415 |
| EcoT22I | ATGCAT | 2 cut(s) | 570, 574 |
| ErhI | CCWWGG | 1 cut(s) | 1415 |
| FbaI | TGATCA | 3 cut(s) | 88, 292, 1029 |
| FokI | GGATG | 3 cut(s) | 224, 436, 904 |
| FspBI | CTAG | 3 cut(s) | 287, 644, 930 |
| GlaI | GCGC | 1 cut(s) | 666 |
| GsuI | CTGGAG | 1 cut(s) | 795 |
| HaeIII | GGCC | 6 cut(s) | 151, 796, 840, 1065, 1271, 1479 |
| HapII | CCGG | 3 cut(s) | 123, 882, 1511 |
| HgaI | GACGC | 1 cut(s) | 370 |
| HhaI | GCGC | 1 cut(s) | 667 |
| Hin6I | GCGC | 1 cut(s) | 665 |
| HinP1I | GCGC | 1 cut(s) | 665 |
| HinfI | GANTC | 6 cut(s) | 24, 272, 412, 905, 1121, 1333 |
| HpaII | CCGG | 3 cut(s) | 123, 882, 1511 |
| HphI | GGTGA | 3 cut(s) | 83, 986, 1442 |
| Hpy166II | GTNNAC | 1 cut(s) | 537 |
| Hpy188I | TCNGA | 8 cut(s) | 349, 386, 808, 834, 1042, 1168, 1467, 1537 |
| Hpy188III | TCNNGA | 4 cut(s) | 86, 416, 882, 1520 |
| Hpy8I | GTNNAC | 1 cut(s) | 537 |
| Hpy99I | CGWCG | 2 cut(s) | 320, 386 |
| HpyAV | CCTTC | 2 cut(s) | 786, 1283 |
| HpyCH4III | ACNGT | 4 cut(s) | 521, 728, 926, 962 |
| HpyCH4IV | ACGT | 1 cut(s) | 1496 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 107, 110, 113, 116, 119, 175, 770, 793 |
| HpyF3I | CTNAG | 2 cut(s) | 263, 1188 |
| HpySE526I | ACGT | 1 cut(s) | 1496 |
| HspAI | GCGC | 1 cut(s) | 665 |
| Kpn2I | TCCGGA | 1 cut(s) | 881 |
| KroI | GCCGGC | 1 cut(s) | 122 |
| KroNI | GCCGGC | 1 cut(s) | 124 |
| Ksp22I | TGATCA | 3 cut(s) | 88, 292, 1029 |
| LguI | GCTCTTC | 1 cut(s) | 1463 |
| LmnI | GCTCC | 2 cut(s) | 776, 816 |
| LweI | GCATC | 4 cut(s) | 430, 581, 888, 1221 |
| MabI | ACCWGGT | 1 cut(s) | 653 |
| MaeI | CTAG | 3 cut(s) | 287, 644, 930 |
| MaeII | ACGT | 1 cut(s) | 1496 |
| MaeIII | GTNAC | 3 cut(s) | 722, 992, 1013 |
| MfeI | CAATTG | 1 cut(s) | 526 |
| MflI | RGATCY | 3 cut(s) | 878, 1411, 1462 |
| MlsI | TGGCCA | 1 cut(s) | 840 |
| MluNI | TGGCCA | 1 cut(s) | 840 |
| MlyI | GAGTC | 2 cut(s) | 18, 406 |
| MmeI | TCCRAC | 4 cut(s) | 216, 273, 364, 945 |
| Mox20I | TGGCCA | 1 cut(s) | 840 |
| Mph1103I | ATGCAT | 2 cut(s) | 570, 574 |
| MroI | TCCGGA | 1 cut(s) | 881 |
| MroNI | GCCGGC | 1 cut(s) | 122 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1332 |
| MscI | TGGCCA | 1 cut(s) | 840 |
| MseI | TTAA | 5 cut(s) | 377, 609, 957, 1209, 1344 |
| MslI | CAYNNNNRTG | 1 cut(s) | 96 |
| Msp20I | TGGCCA | 1 cut(s) | 840 |
| MspA1I | CMGCKG | 5 cut(s) | 8, 107, 113, 119, 554 |
| MspI | CCGG | 3 cut(s) | 123, 882, 1511 |
| MspR9I | CCNGG | 2 cut(s) | 655, 1511 |
| MunI | CAATTG | 1 cut(s) | 526 |
| MvaI | CCWGG | 1 cut(s) | 655 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 107, 110, 113, 116, 119, 175, 770, 793 |
| NaeI | GCCGGC | 1 cut(s) | 124 |
| NciI | CCSGG | 1 cut(s) | 1511 |
| NcoI | CCATGG | 1 cut(s) | 1415 |
| NgoMIV | GCCGGC | 1 cut(s) | 122 |
| NlaIV | GGNNCC | 5 cut(s) | 158, 880, 1239, 1413, 1491 |
| NmeAIII | GCCGAG | 2 cut(s) | 116, 1035 |
| NmuCI | GTSAC | 1 cut(s) | 992 |
| NsiI | ATGCAT | 2 cut(s) | 570, 574 |
| NspI | RCATGY | 1 cut(s) | 572 |
| NspV | TTCGAA | 1 cut(s) | 591 |
| PaeI | GCATGC | 1 cut(s) | 572 |
| PagI | TCATGA | 2 cut(s) | 85, 415 |
| PceI | AGGCCT | 2 cut(s) | 1065, 1479 |
| PciSI | GCTCTTC | 1 cut(s) | 1463 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 143 |
| PdiI | GCCGGC | 1 cut(s) | 124 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1332 |
| PfeI | GAWTC | 4 cut(s) | 272, 905, 1121, 1333 |
| PleI | GAGTC | 2 cut(s) | 18, 406 |
| PpsI | GAGTC | 2 cut(s) | 18, 406 |
| PshBI | ATTAAT | 1 cut(s) | 609 |
| Psp6I | CCWGG | 1 cut(s) | 653 |
| PspGI | CCWGG | 1 cut(s) | 653 |
| PspN4I | GGNNCC | 5 cut(s) | 158, 880, 1239, 1413, 1491 |
| PspPI | GGNCC | 2 cut(s) | 657, 1270 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1331, 1363 |
| PstI | CTGCAG | 3 cut(s) | 112, 559, 862 |
| PstNI | CAGNNNCTG | 4 cut(s) | 11, 107, 654, 1563 |
| PsuI | RGATCY | 3 cut(s) | 878, 1411, 1462 |
| PvuII | CAGCTG | 4 cut(s) | 8, 107, 113, 554 |
| RsaI | GTAC | 8 cut(s) | 229, 479, 911, 1159, 1320, 1340, 1365, 1504 |
| RsaNI | GTAC | 8 cut(s) | 228, 478, 910, 1158, 1319, 1339, 1364, 1503 |
| RseI | CAYNNNNRTG | 1 cut(s) | 96 |
| SapI | GCTCTTC | 1 cut(s) | 1463 |
| SaqAI | TTAA | 5 cut(s) | 377, 609, 957, 1209, 1344 |
| Sau96I | GGNCC | 2 cut(s) | 657, 1270 |
| ScaI | AGTACT | 2 cut(s) | 229, 1320 |
| SchI | GAGTC | 2 cut(s) | 18, 406 |
| ScrFI | CCNGG | 2 cut(s) | 655, 1511 |
| SexAI | ACCWGGT | 1 cut(s) | 653 |
| SfaNI | GCATC | 4 cut(s) | 430, 581, 888, 1221 |
| SfcI | CTRYAG | 3 cut(s) | 108, 555, 858 |
| SfuI | TTCGAA | 1 cut(s) | 591 |
| SinI | GGWCC | 1 cut(s) | 657 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 96 |
| SmlI | CTYRAG | 1 cut(s) | 711 |
| SmoI | CTYRAG | 1 cut(s) | 711 |
| SpeI | ACTAGT | 1 cut(s) | 286 |
| SphI | GCATGC | 1 cut(s) | 572 |
| SseBI | AGGCCT | 2 cut(s) | 1065, 1479 |
| SsiI | CCGC | 3 cut(s) | 117, 1125, 1403 |
| SspI | AATATT | 2 cut(s) | 331, 823 |
| SspMI | CTAG | 3 cut(s) | 287, 644, 930 |
| StuI | AGGCCT | 2 cut(s) | 1065, 1479 |
| StyD4I | CCNGG | 2 cut(s) | 653, 1509 |
| StyI | CCWWGG | 1 cut(s) | 1415 |
| TaaI | ACNGT | 4 cut(s) | 521, 728, 926, 962 |
| TaiI | ACGT | 1 cut(s) | 1499 |
| TaqI | TCGA | 3 cut(s) | 27, 591, 964 |
| TatI | WGTACW | 5 cut(s) | 227, 1157, 1318, 1338, 1363 |
| TauI | GCSGC | 1 cut(s) | 119 |
| TfiI | GAWTC | 4 cut(s) | 272, 905, 1121, 1333 |
| Tru1I | TTAA | 5 cut(s) | 377, 609, 957, 1209, 1344 |
| Tru9I | TTAA | 5 cut(s) | 377, 609, 957, 1209, 1344 |
| TscAI | CASTG | 1 cut(s) | 931 |
| TseFI | GTSAC | 1 cut(s) | 992 |
| Tsp45I | GTSAC | 1 cut(s) | 992 |
| TspDTI | ATGAA | 6 cut(s) | 338, 761, 906, 1134, 1203, 1341 |
| TspRI | CASTG | 1 cut(s) | 931 |
| VpaK11BI | GGWCC | 1 cut(s) | 657 |
| VspI | ATTAAT | 1 cut(s) | 609 |
| XapI | RAATTY | 1 cut(s) | 934 |
| XceI | RCATGY | 1 cut(s) | 572 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1332 |
| XspI | CTAG | 3 cut(s) | 287, 644, 930 |
| ZrmI | AGTACT | 2 cut(s) | 229, 1320 |
| Zsp2I | ATGCAT | 2 cut(s) | 570, 574 |