RchiOBHm_Chr4g0445691

helix loop helix domain

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
66105052 .. 66107770
2719 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41328

Sequence Viewer

Length: 1578 bp
ATGGCAGCTGCTGACCAATGCCGACTCGACAATACTGGAAATTGTGTTGCCATCTCTTCCTCTACACAACCAAACTGGTGGGATCATGATCACCTCCATGCAGCAGCTGCAGCTGCCGCTGCCGGCTCTCATCTCTCGGCTTCTTCGTGGCCGTGGCACCAGCACCAGCACCAGCAGCCAAACCCTAACTCCAACTCTTCTTGCGATGAGGATGTTTCAATGTCCAGTACTTCCTTTACCAATGCCTCCAACCATTCCAGCCTCAGCGTTGATTCCTCTCGCAGACTAGTTGATCAGCGTTCTGCTTCGCCCAACGACGACATGAATAATATTGGAGAACAGGTTTCTGATAATCAAATATGGAGACAAGTTCTATTAAGCGTCGGAAACAATGATTTGAACAGCAGTATGACTCATGATGTAGGAGAGAACTTCCTTGATGCACTATCATCCAAGAACTTGTCAAATACTGCTATGTACGAACCTGCTTGTGATTACTTGAAGAAATTGGACAACGACAGTAGCAATTGGGAGTTCACAAACTCATCATCAGCTGCAGCTACTATGCATGCATCTAATCTCAACAATTTCGAAAGGCAAATCAACATTAATGGATCGTTTAGCAGCGAGAACTTGTCTAATCTAGTCAGCACCTGGTCCATTGCGCCACCTGAACCACAAGTAGCCAATAGCCCTTTCTTCAATCTTCCTCAAGTGTCATGTTACGGTGCTAATAATAATTTGATGAAAGTTGAAAGTGCTGCACAATTAGCTGGAGCAAACTTGCATGGAAGGCCATTTAGTTCTGATAATGGGAGCAATATTGACTATCAGATTGGCCACAACAACACAATGGCTGCAGATAATAGCTACTATGGATCCGGAAATGGTTTAGTGATGCCCGATTCGTACTCTTCATCCAACAGTGCTAGAAATTTCACAGATGTCATATCTTTTAACAGTCGATTAGGCAAGCCGTTGATGGATCATAGTCACCATGCACAAAAGCCGAGTAACTTCAAATCTTTGATCAACTTATCTGATAACATTTCAAAGAAGCAAGGCCTCCAAACTTCTTCGCCGACAAGAATGAGTGGAAGAGGACAAGGAACTGCAAATGAATCCGCAGGGAAGAAGAAACGAACAGATGAGAGTAGTACATCATCAGAAATAGTTTTGAAAAAGCCTAAGCAAGAAACTTCAGCAGTTAATTCATCATCATCTGTAAAGATGCAGGCACCAAAAGTCAAGGTTGCTGATAAGATCACGGCCCTTCAACAAATCGTGTCTCCATTTGGAAAGACTGATACAGCTTCAGTACTATATGAAGCGATTCAGTACATTAAGTTCCTCCAAGACCAAGTACAGGTGCTATTGAGTAGCCCTTATTTGAAGACAAATCCGCATAAGGATCCATGGGGAAAATTGGATCAAATTAGGGGAGATCATCACCCAAAGGTGGATCTGAAGAGCAGAGGCCTATGCTTGGTGCCTACGTCATGTACGCCCCCGGTTTATCGTGAAAATACAGGATCAGACTACTGGACACCAACATACAGAGGCTGTTTGTATAGATAA

Protein Analysis

525

Amino Acids

57.28

Weight (kDa)

6.4

Isoelectric Point (pI)

40.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 493
AccB1I GGYRCC 3 cut(s) 156, 1237, 1489
AccIII TCCGGA 1 cut(s) 881
AciI CCGC 3 cut(s) 117, 1125, 1403
AcoI YGGCCR 2 cut(s) 149, 838
AcsI RAATTY 1 cut(s) 934
AcuI CTGAAG 3 cut(s) 1185, 1299, 1487
AfaI GTAC 8 cut(s) 229, 479, 911, 1159, 1320, 1340, 1365, 1504
AfiI CCNNNNNNNGG 3 cut(s) 1366, 1459, 1486
AhlI ACTAGT 1 cut(s) 286
AjnI CCWGG 1 cut(s) 653
AjuI GAANNNNNNNTTGG 2 cut(s) 680, 712
AluBI AGCT 8 cut(s) 8, 107, 113, 554, 560, 773, 870, 1313
AluI AGCT 8 cut(s) 8, 107, 113, 554, 560, 773, 870, 1313
Alw26I GTCTC 2 cut(s) 358, 1293
AlwNI CAGNNNCTG 4 cut(s) 11, 107, 654, 1563
Aor13HI TCCGGA 1 cut(s) 881
AoxI GGCC 6 cut(s) 149, 794, 838, 1063, 1269, 1477
ApoI RAATTY 1 cut(s) 934
AseI ATTAAT 1 cut(s) 609
Asp700I GAANNNNTTC 1 cut(s) 1332
AspLEI GCGC 1 cut(s) 667
AspS9I GGNCC 2 cut(s) 657, 1270
AsuC2I CCSGG 1 cut(s) 1511
AsuHPI GGTGA 3 cut(s) 83, 986, 1442
AsuII TTCGAA 1 cut(s) 591
AvaII GGWCC 1 cut(s) 657
BalI TGGCCA 1 cut(s) 840
BamHI GGATCC 2 cut(s) 878, 1411
BanI GGYRCC 3 cut(s) 156, 1237, 1489
BbsI GAAGAC 1 cut(s) 1400
BbvCI CCTCAGC 1 cut(s) 263
BccI CCATC 2 cut(s) 59, 976
BceAI ACGGC 3 cut(s) 136, 961, 1284
BciT130I CCWGG 1 cut(s) 655
BclI TGATCA 3 cut(s) 88, 292, 1029
BcnI CCSGG 1 cut(s) 1511
BcoDI GTCTC 2 cut(s) 358, 1293
BcuI ACTAGT 1 cut(s) 286
BfaI CTAG 3 cut(s) 287, 644, 930
BfmI CTRYAG 3 cut(s) 108, 555, 858
BfuAI ACCTGC 1 cut(s) 493
BmcAI AGTACT 2 cut(s) 229, 1320
Bme1390I CCNGG 2 cut(s) 655, 1511
Bme18I GGWCC 1 cut(s) 657
BmgT120I GGNCC 2 cut(s) 657, 1270
BmiI GGNNCC 5 cut(s) 158, 880, 1239, 1413, 1491
BmrFI CCNGG 2 cut(s) 655, 1511
BmsI GCATC 4 cut(s) 430, 581, 888, 1221
BpiI GAAGAC 1 cut(s) 1400
BpmI CTGGAG 1 cut(s) 795
Bpu10I CCTNAGC 2 cut(s) 263, 1188
Bpu14I TTCGAA 1 cut(s) 591
BpuEI CTTGAG 1 cut(s) 696
BpuMI CCSGG 1 cut(s) 1511
BsaBI GATNNNNATC 1 cut(s) 87
BsaJI CCNNGG 3 cut(s) 152, 1415, 1509
BsaWI WCCGGW 1 cut(s) 881
BsaXI ACNNNNNCTCC 4 cut(s) 173, 203, 327, 357
Bsc4I CCNNNNNNNGG 3 cut(s) 1366, 1459, 1486
Bse118I RCCGGY 1 cut(s) 122
Bse1I ACTGG 4 cut(s) 40, 80, 225, 1547
Bse3DI GCAATG 1 cut(s) 660
Bse8I GATNNNNATC 1 cut(s) 87
BseAI TCCGGA 1 cut(s) 881
BseBI CCWGG 1 cut(s) 655
BseDI CCNNGG 3 cut(s) 152, 1415, 1509
BseGI GGATG 3 cut(s) 217, 449, 917
BseJI GATNNNNATC 1 cut(s) 87
BseLI CCNNNNNNNGG 3 cut(s) 1366, 1459, 1486
BseMI GCAATG 1 cut(s) 660
BseMII CTCAG 1 cut(s) 277
BseNI ACTGG 4 cut(s) 40, 80, 225, 1547
BsgI GTGCAG 1 cut(s) 747
BshFI GGCC 6 cut(s) 151, 796, 840, 1065, 1271, 1479
BshNI GGYRCC 3 cut(s) 156, 1237, 1489
BsiSI CCGG 3 cut(s) 123, 882, 1511
BslI CCNNNNNNNGG 3 cut(s) 1366, 1459, 1486
BsmAI GTCTC 2 cut(s) 358, 1293
BsnI GGCC 6 cut(s) 151, 796, 840, 1065, 1271, 1479
Bsp119I TTCGAA 1 cut(s) 591
Bsp13I TCCGGA 1 cut(s) 881
Bsp19I CCATGG 1 cut(s) 1415
BspACI CCGC 3 cut(s) 117, 1125, 1403
BspANI GGCC 6 cut(s) 151, 796, 840, 1065, 1271, 1479
BspCNI CTCAG 1 cut(s) 276
BspEI TCCGGA 1 cut(s) 881
BspHI TCATGA 2 cut(s) 85, 415
BspLI GGNNCC 5 cut(s) 158, 880, 1239, 1413, 1491
BspMAI CTGCAG 3 cut(s) 112, 559, 862
BspMI ACCTGC 1 cut(s) 493
BspQI GCTCTTC 1 cut(s) 1463
BspT104I TTCGAA 1 cut(s) 591
BspT107I GGYRCC 3 cut(s) 156, 1237, 1489
BsrDI GCAATG 1 cut(s) 660
BsrFI RCCGGY 1 cut(s) 122
BsrI ACTGG 4 cut(s) 40, 80, 225, 1547
BssAI RCCGGY 1 cut(s) 122
BssECI CCNNGG 3 cut(s) 152, 1415, 1509
BssT1I CCWWGG 1 cut(s) 1415
Bst2UI CCWGG 1 cut(s) 655
Bst4CI ACNGT 4 cut(s) 521, 728, 926, 962
Bst6I CTCTTC 5 cut(s) 61, 202, 919, 1093, 1463
BstAPI GCANNNNNTGC 1 cut(s) 107
BstBI TTCGAA 1 cut(s) 591
BstC8I GCNNGC 4 cut(s) 124, 570, 974, 1236
BstDEI CTNAG 2 cut(s) 263, 1188
BstDSI CCRYGG 2 cut(s) 152, 1415
BstF5I GGATG 3 cut(s) 217, 449, 917
BstHHI GCGC 1 cut(s) 667
BstMAI GTCTC 2 cut(s) 358, 1293
BstMWI GCNNNNNNNGC 8 cut(s) 107, 110, 113, 116, 119, 175, 770, 793
BstNI CCWGG 1 cut(s) 655
BstNSI RCATGY 1 cut(s) 572
BstSCI CCNGG 2 cut(s) 653, 1509
BstSFI CTRYAG 3 cut(s) 108, 555, 858
BstV2I GAAGAC 1 cut(s) 1400
BstX2I RGATCY 3 cut(s) 878, 1411, 1462
BstXI CCANNNNNNTGG 1 cut(s) 78
BstYI RGATCY 3 cut(s) 878, 1411, 1462
BsuRI GGCC 6 cut(s) 151, 796, 840, 1065, 1271, 1479
BtgI CCRYGG 2 cut(s) 152, 1415
BtgZI GCGATG 1 cut(s) 219
BtsCI GGATG 3 cut(s) 217, 449, 917
BtsIMutI CAGTG 1 cut(s) 931
BveI ACCTGC 1 cut(s) 493
Cac8I GCNNGC 4 cut(s) 124, 570, 974, 1236
CaiI CAGNNNCTG 4 cut(s) 11, 107, 654, 1563
CciI TCATGA 2 cut(s) 85, 415
CfoI GCGC 1 cut(s) 667
Cfr10I RCCGGY 1 cut(s) 122
Cfr13I GGNCC 2 cut(s) 657, 1270
CseI GACGC 1 cut(s) 370
CsiI ACCWGGT 1 cut(s) 653
Csp6I GTAC 8 cut(s) 228, 478, 910, 1158, 1319, 1339, 1364, 1503
CviQI GTAC 8 cut(s) 228, 478, 910, 1158, 1319, 1339, 1364, 1503
DdeI CTNAG 2 cut(s) 263, 1188
EaeI YGGCCR 2 cut(s) 149, 838
Eam1104I CTCTTC 5 cut(s) 61, 202, 919, 1093, 1463
EarI CTCTTC 5 cut(s) 61, 202, 919, 1093, 1463
Eco130I CCWWGG 1 cut(s) 1415
Eco147I AGGCCT 2 cut(s) 1065, 1479
Eco47I GGWCC 1 cut(s) 657
Eco57I CTGAAG 3 cut(s) 1185, 1299, 1487
EcoRII CCWGG 1 cut(s) 653
EcoT14I CCWWGG 1 cut(s) 1415
EcoT22I ATGCAT 2 cut(s) 570, 574
ErhI CCWWGG 1 cut(s) 1415
FbaI TGATCA 3 cut(s) 88, 292, 1029
FokI GGATG 3 cut(s) 224, 436, 904
FspBI CTAG 3 cut(s) 287, 644, 930
GlaI GCGC 1 cut(s) 666
GsuI CTGGAG 1 cut(s) 795
HaeIII GGCC 6 cut(s) 151, 796, 840, 1065, 1271, 1479
HapII CCGG 3 cut(s) 123, 882, 1511
HgaI GACGC 1 cut(s) 370
HhaI GCGC 1 cut(s) 667
Hin6I GCGC 1 cut(s) 665
HinP1I GCGC 1 cut(s) 665
HinfI GANTC 6 cut(s) 24, 272, 412, 905, 1121, 1333
HpaII CCGG 3 cut(s) 123, 882, 1511
HphI GGTGA 3 cut(s) 83, 986, 1442
Hpy166II GTNNAC 1 cut(s) 537
Hpy188I TCNGA 8 cut(s) 349, 386, 808, 834, 1042, 1168, 1467, 1537
Hpy188III TCNNGA 4 cut(s) 86, 416, 882, 1520
Hpy8I GTNNAC 1 cut(s) 537
Hpy99I CGWCG 2 cut(s) 320, 386
HpyAV CCTTC 2 cut(s) 786, 1283
HpyCH4III ACNGT 4 cut(s) 521, 728, 926, 962
HpyCH4IV ACGT 1 cut(s) 1496
HpyF10VI GCNNNNNNNGC 8 cut(s) 107, 110, 113, 116, 119, 175, 770, 793
HpyF3I CTNAG 2 cut(s) 263, 1188
HpySE526I ACGT 1 cut(s) 1496
HspAI GCGC 1 cut(s) 665
Kpn2I TCCGGA 1 cut(s) 881
KroI GCCGGC 1 cut(s) 122
KroNI GCCGGC 1 cut(s) 124
Ksp22I TGATCA 3 cut(s) 88, 292, 1029
LguI GCTCTTC 1 cut(s) 1463
LmnI GCTCC 2 cut(s) 776, 816
LweI GCATC 4 cut(s) 430, 581, 888, 1221
MabI ACCWGGT 1 cut(s) 653
MaeI CTAG 3 cut(s) 287, 644, 930
MaeII ACGT 1 cut(s) 1496
MaeIII GTNAC 3 cut(s) 722, 992, 1013
MfeI CAATTG 1 cut(s) 526
MflI RGATCY 3 cut(s) 878, 1411, 1462
MlsI TGGCCA 1 cut(s) 840
MluNI TGGCCA 1 cut(s) 840
MlyI GAGTC 2 cut(s) 18, 406
MmeI TCCRAC 4 cut(s) 216, 273, 364, 945
Mox20I TGGCCA 1 cut(s) 840
Mph1103I ATGCAT 2 cut(s) 570, 574
MroI TCCGGA 1 cut(s) 881
MroNI GCCGGC 1 cut(s) 122
MroXI GAANNNNTTC 1 cut(s) 1332
MscI TGGCCA 1 cut(s) 840
MseI TTAA 5 cut(s) 377, 609, 957, 1209, 1344
MslI CAYNNNNRTG 1 cut(s) 96
Msp20I TGGCCA 1 cut(s) 840
MspA1I CMGCKG 5 cut(s) 8, 107, 113, 119, 554
MspI CCGG 3 cut(s) 123, 882, 1511
MspR9I CCNGG 2 cut(s) 655, 1511
MunI CAATTG 1 cut(s) 526
MvaI CCWGG 1 cut(s) 655
MwoI GCNNNNNNNGC 8 cut(s) 107, 110, 113, 116, 119, 175, 770, 793
NaeI GCCGGC 1 cut(s) 124
NciI CCSGG 1 cut(s) 1511
NcoI CCATGG 1 cut(s) 1415
NgoMIV GCCGGC 1 cut(s) 122
NlaIV GGNNCC 5 cut(s) 158, 880, 1239, 1413, 1491
NmeAIII GCCGAG 2 cut(s) 116, 1035
NmuCI GTSAC 1 cut(s) 992
NsiI ATGCAT 2 cut(s) 570, 574
NspI RCATGY 1 cut(s) 572
NspV TTCGAA 1 cut(s) 591
PaeI GCATGC 1 cut(s) 572
PagI TCATGA 2 cut(s) 85, 415
PceI AGGCCT 2 cut(s) 1065, 1479
PciSI GCTCTTC 1 cut(s) 1463
PcsI WCGNNNNNNNCGW 1 cut(s) 143
PdiI GCCGGC 1 cut(s) 124
PdmI GAANNNNTTC 1 cut(s) 1332
PfeI GAWTC 4 cut(s) 272, 905, 1121, 1333
PleI GAGTC 2 cut(s) 18, 406
PpsI GAGTC 2 cut(s) 18, 406
PshBI ATTAAT 1 cut(s) 609
Psp6I CCWGG 1 cut(s) 653
PspGI CCWGG 1 cut(s) 653
PspN4I GGNNCC 5 cut(s) 158, 880, 1239, 1413, 1491
PspPI GGNCC 2 cut(s) 657, 1270
PsrI GAACNNNNNNTAC 2 cut(s) 1331, 1363
PstI CTGCAG 3 cut(s) 112, 559, 862
PstNI CAGNNNCTG 4 cut(s) 11, 107, 654, 1563
PsuI RGATCY 3 cut(s) 878, 1411, 1462
PvuII CAGCTG 4 cut(s) 8, 107, 113, 554
RsaI GTAC 8 cut(s) 229, 479, 911, 1159, 1320, 1340, 1365, 1504
RsaNI GTAC 8 cut(s) 228, 478, 910, 1158, 1319, 1339, 1364, 1503
RseI CAYNNNNRTG 1 cut(s) 96
SapI GCTCTTC 1 cut(s) 1463
SaqAI TTAA 5 cut(s) 377, 609, 957, 1209, 1344
Sau96I GGNCC 2 cut(s) 657, 1270
ScaI AGTACT 2 cut(s) 229, 1320
SchI GAGTC 2 cut(s) 18, 406
ScrFI CCNGG 2 cut(s) 655, 1511
SexAI ACCWGGT 1 cut(s) 653
SfaNI GCATC 4 cut(s) 430, 581, 888, 1221
SfcI CTRYAG 3 cut(s) 108, 555, 858
SfuI TTCGAA 1 cut(s) 591
SinI GGWCC 1 cut(s) 657
SmiMI CAYNNNNRTG 1 cut(s) 96
SmlI CTYRAG 1 cut(s) 711
SmoI CTYRAG 1 cut(s) 711
SpeI ACTAGT 1 cut(s) 286
SphI GCATGC 1 cut(s) 572
SseBI AGGCCT 2 cut(s) 1065, 1479
SsiI CCGC 3 cut(s) 117, 1125, 1403
SspI AATATT 2 cut(s) 331, 823
SspMI CTAG 3 cut(s) 287, 644, 930
StuI AGGCCT 2 cut(s) 1065, 1479
StyD4I CCNGG 2 cut(s) 653, 1509
StyI CCWWGG 1 cut(s) 1415
TaaI ACNGT 4 cut(s) 521, 728, 926, 962
TaiI ACGT 1 cut(s) 1499
TaqI TCGA 3 cut(s) 27, 591, 964
TatI WGTACW 5 cut(s) 227, 1157, 1318, 1338, 1363
TauI GCSGC 1 cut(s) 119
TfiI GAWTC 4 cut(s) 272, 905, 1121, 1333
Tru1I TTAA 5 cut(s) 377, 609, 957, 1209, 1344
Tru9I TTAA 5 cut(s) 377, 609, 957, 1209, 1344
TscAI CASTG 1 cut(s) 931
TseFI GTSAC 1 cut(s) 992
Tsp45I GTSAC 1 cut(s) 992
TspDTI ATGAA 6 cut(s) 338, 761, 906, 1134, 1203, 1341
TspRI CASTG 1 cut(s) 931
VpaK11BI GGWCC 1 cut(s) 657
VspI ATTAAT 1 cut(s) 609
XapI RAATTY 1 cut(s) 934
XceI RCATGY 1 cut(s) 572
XmnI GAANNNNTTC 1 cut(s) 1332
XspI CTAG 3 cut(s) 287, 644, 930
ZrmI AGTACT 2 cut(s) 229, 1320
Zsp2I ATGCAT 2 cut(s) 570, 574
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.