AT1G31350

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011373
Physical Location & Seq
Reverse (-)
11221267 .. 11222827
1561 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G31350.2

Sequence Viewer

Length: 1188 bp
ATGGAAAAAAAACTGAAACGGCGTGAATCAATGTCAACCACCGCCGCAGAATCACCGCCGGCGAAACGAAGAAGAACAGTCACCGGAAATGAAAACTCCGCTTTAATCGAAGGACTTCCCGATCACATCTCAGAGATCTGTCTGTCTCTCGTTCACCGTCCGTCGTTACTCTCCGCCGTGTGTACACGGTGGCGCCGTCTTCTTTACTCGCCGGAATTTCCTTCGTTTCCGTCACTCTACGCTCTTTTCGTCGATTCAACATCGGATACGGGTCGGGTCAACCCGTCAGTCCGGTTTATGTGTTTCAACCCGGTTTCTTCAAAATGGTATCCGCTTCCTCCTCCACCACCTGACCCGCCTCTTCACCGGATTCTTTACCGTCATCCGTCGTTTATCTCCTTTAATTTACCGATTCAATGCGTCTCCGCCGCCGGAAAACTCATTCTCATCGCCGGAAGTAACCAACAACTCTCTCCGGCGATCTCTCACCCGTTAATTTTCGATCCAATTTCGTCATCCTGGAGCTCCGGTCCTCGAATCGGATCTCCAAGACGGTGGTGCGCCACCGGAGCTTGCGACGGAGCTATCTACATCGCAAGCGGAATTAGTTCTCAGTTCTCATCAACCGTCGCGAAATCTGTCGAGAAATTAGATCTAACCGAACAAAACCGGAATAACCACCGGTTTAATTGGGAGAAATTGAGAGATATGAGAGATTTACGGTTTAGTCGAGAAGCTATAGACGCTGTTGGATATAGAAGAAAGCTTTTAATGGTAAATGTTAAAGGAGACGCGGTTAAAGAAGGAGCTATATACGACGTCGTTAAAGATGATTGGGAACCTATGCCGGAGGAGATGTTGGTTGGATGGAGAGGCCCGGTTGCGGCGATGGAGGAGGAGATTCTTTATTCGGTGGATGAGAGGAGAGGGACAGTGAGAAAGTACGATGATGAGAAGAGAGAGTGGAGAGAAGTGGTTGTGGTTGAAGGTGGAGAAGAGATGCTTAAAGGAGCTACGCAAGTAACGGCGGATTCCGGTAAACTTTGTGTTGTTACTGGTGATGGGAAAATTGTTGTGGTGGATGTTGCGGCGGAGCCGGCGAAGATTTGGAATGTTGAGATTCCTGATGGACTTGAACCGGTTTCGGTTCATGTTTTACCAAGAATGAGTCAACCGAATTTTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0008150 GO:0009628 GO:0031461 GO:0031463 GO:0032991 GO:0044424 GO:0044464 GO:0050896 GO:0080167 GO:1902494 GO:1990234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Kelch_6

Protein Analysis

395

Amino Acids

44.15

Weight (kDa)

7.58

Isoelectric Point (pI)

57.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kelch_FKB95 PF25210 160 - 410 4.2e-19 FKB95, Kelch-repeats domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011373)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31350 AT1G31350
fragaria_vesca FvH4_5g24190
malus_domestica MD06G1017400.v1.1 MD06G1017500.v1.1 MD07G1079500.v1.1
prunus_persica Prupe.2G102300_v2.0.a1 Prupe.2G102400_v2.0.a1 Prupe.5G018500_v2.0.a1
pyrus_communis pycom06g01420
rosa_chinensis RchiOBHm_Chr7g0213971
rosa_laevigata RLG00000002765
rosa_multiflora Rmu_sc0000328.1_g000002
rosa_roxburghii Rroxscaffold_3G00245610
rosa_rugosa Rorug07G0145100
rosa_samantha Rh7AG278400 Rh7BG271900 Rh7CG297400 Rh7DG283900
rosa_wichuraiana Rw7G023950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 822
AccB1I GGYRCC 1 cut(s) 192
AccII CGCG 2 cut(s) 632, 794
AclWI GGATC 2 cut(s) 497, 550
AcsI RAATTY 2 cut(s) 215, 1177
AcyI GRCGYC 2 cut(s) 193, 819
AfaI GTAC 2 cut(s) 184, 944
AfiI CCNNNNNNNGG 2 cut(s) 539, 883
AgeI ACCGGT 2 cut(s) 681, 1138
AgsI TTSAA 6 cut(s) 258, 307, 321, 416, 986, 1136
AjnI CCWGG 1 cut(s) 518
AluBI AGCT 7 cut(s) 525, 572, 584, 737, 766, 809, 1013
AluI AGCT 7 cut(s) 525, 572, 584, 737, 766, 809, 1013
Alw21I GWGCWC 1 cut(s) 527
Alw26I GTCTC 3 cut(s) 150, 427, 783
AlwI GGATC 2 cut(s) 497, 550
AoxI GGCC 1 cut(s) 874
ApoI RAATTY 2 cut(s) 215, 1177
AsiGI ACCGGT 2 cut(s) 681, 1138
Asp700I GAANNNNTTC 2 cut(s) 114, 607
AspLEI GCGC 2 cut(s) 195, 563
AspS9I GGNCC 2 cut(s) 530, 875
AsuC2I CCSGG 2 cut(s) 311, 878
AsuHPI GGTGA 6 cut(s) 45, 73, 146, 356, 479, 1070
AvaII GGWCC 1 cut(s) 530
BanI GGYRCC 1 cut(s) 192
BanII GRGCYC 1 cut(s) 527
BbsI GAAGAC 1 cut(s) 191
Bbv12I GWGCWC 1 cut(s) 527
BccI CCATC 4 cut(s) 861, 883, 1055, 1121
BceAI ACGGC 4 cut(s) 35, 161, 180, 1041
BciT130I CCWGG 1 cut(s) 520
BciVI GTATCC 2 cut(s) 259, 339
BcnI CCSGG 2 cut(s) 311, 878
BcoDI GTCTC 3 cut(s) 150, 427, 783
BfmI CTRYAG 1 cut(s) 738
BfoI RGCGCY 1 cut(s) 196
BfuI GTATCC 2 cut(s) 259, 339
BglII AGATCT 2 cut(s) 135, 652
BisI GCNGC 4 cut(s) 45, 429, 885, 1089
BlsI GCNGC 4 cut(s) 46, 430, 886, 1090
Bme1390I CCNGG 3 cut(s) 311, 520, 878
Bme18I GGWCC 1 cut(s) 530
BmgT120I GGNCC 2 cut(s) 530, 875
BmiI GGNNCC 3 cut(s) 194, 840, 1095
BmrFI CCNGG 3 cut(s) 311, 520, 878
BmsI GCATC 1 cut(s) 990
BpiI GAAGAC 1 cut(s) 191
BpmI CTGGAG 1 cut(s) 541
BpuMI CCSGG 2 cut(s) 311, 878
BsaHI GRCGYC 2 cut(s) 193, 819
BsaWI WCCGGW 9 cut(s) 83, 291, 366, 527, 566, 669, 681, 1034, 1138
BsaXI ACNNNNNCTCC 6 cut(s) 514, 544, 780, 810, 842, 872
Bsc4I CCNNNNNNNGG 2 cut(s) 539, 883
Bse118I RCCGGY 4 cut(s) 58, 681, 1096, 1138
Bse1I ACTGG 1 cut(s) 1060
BseBI CCWGG 1 cut(s) 520
BseGI GGATG 5 cut(s) 382, 515, 872, 922, 1087
BseLI CCNNNNNNNGG 2 cut(s) 539, 883
BseMII CTCAG 2 cut(s) 144, 626
BseNI ACTGG 1 cut(s) 1060
BseRI GAGGAG 5 cut(s) 330, 866, 908, 911, 937
Bsh1236I CGCG 2 cut(s) 632, 794
BshFI GGCC 1 cut(s) 876
BshNI GGYRCC 1 cut(s) 192
BshTI ACCGGT 2 cut(s) 681, 1138
BsiHKAI GWGCWC 1 cut(s) 527
BslFI GGGAC 1 cut(s) 943
BslI CCNNNNNNNGG 2 cut(s) 539, 883
BsmAI GTCTC 3 cut(s) 150, 427, 783
BsmBI CGTCTC 2 cut(s) 427, 783
BsmFI GGGAC 1 cut(s) 943
BsnI GGCC 1 cut(s) 876
Bsp1286I GDGCHC 1 cut(s) 527
Bsp1407I TGTACA 1 cut(s) 182
Bsp143I GATC 6 cut(s) 121, 135, 480, 502, 542, 652
Bsp68I TCGCGA 1 cut(s) 632
BspANI GGCC 1 cut(s) 876
BspCNI CTCAG 2 cut(s) 143, 625
BspFNI CGCG 2 cut(s) 632, 794
BspLI GGNNCC 3 cut(s) 194, 840, 1095
BspPI GGATC 2 cut(s) 497, 550
BspT107I GGYRCC 1 cut(s) 192
BsrFI RCCGGY 4 cut(s) 58, 681, 1096, 1138
BsrGI TGTACA 1 cut(s) 182
BsrI ACTGG 1 cut(s) 1060
BssAI RCCGGY 4 cut(s) 58, 681, 1096, 1138
BssMI GATC 6 cut(s) 121, 135, 480, 502, 542, 652
BssNI GRCGYC 2 cut(s) 193, 819
Bst2UI CCWGG 1 cut(s) 520
Bst4CI ACNGT 8 cut(s) 79, 158, 189, 380, 555, 628, 723, 934
Bst6I CTCTTC 3 cut(s) 366, 950, 990
BstACI GRCGYC 2 cut(s) 193, 819
BstAUI TGTACA 1 cut(s) 182
BstC8I GCNNGC 4 cut(s) 60, 574, 598, 1098
BstDEI CTNAG 2 cut(s) 130, 612
BstF5I GGATG 5 cut(s) 382, 515, 872, 922, 1087
BstFNI CGCG 2 cut(s) 632, 794
BstH2I RGCGCY 1 cut(s) 196
BstHHI GCGC 2 cut(s) 195, 563
BstKTI GATC 6 cut(s) 124, 138, 483, 505, 545, 655
BstMAI GTCTC 3 cut(s) 150, 427, 783
BstMBI GATC 6 cut(s) 121, 135, 480, 502, 542, 652
BstMWI GCNNNNNNNGC 3 cut(s) 569, 743, 1097
BstNI CCWGG 1 cut(s) 520
BstSCI CCNGG 3 cut(s) 309, 518, 876
BstSFI CTRYAG 1 cut(s) 738
BstUI CGCG 2 cut(s) 632, 794
BstV2I GAAGAC 1 cut(s) 191
BstX2I RGATCY 3 cut(s) 135, 542, 652
BstXI CCANNNNNNTGG 1 cut(s) 555
BstYI RGATCY 3 cut(s) 135, 542, 652
BsuI GTATCC 2 cut(s) 259, 339
BsuRI GGCC 1 cut(s) 876
BtgZI GCGATG 3 cut(s) 433, 577, 902
BtsCI GGATG 5 cut(s) 382, 515, 872, 922, 1087
BtsIMutI CAGTG 1 cut(s) 939
BtuMI TCGCGA 1 cut(s) 632
Cac8I GCNNGC 4 cut(s) 60, 574, 598, 1098
CfoI GCGC 2 cut(s) 195, 563
Cfr10I RCCGGY 4 cut(s) 58, 681, 1096, 1138
Cfr13I GGNCC 2 cut(s) 530, 875
CseI GACGC 3 cut(s) 409, 752, 800
Csp6I GTAC 2 cut(s) 183, 943
CspAI ACCGGT 2 cut(s) 681, 1138
CviAII CATG 1 cut(s) 1151
CviJI RGCY 9 cut(s) 525, 572, 584, 737, 766, 809, 876, 1013, 1096
CviKI_1 RGCY 9 cut(s) 525, 572, 584, 737, 766, 809, 876, 1013, 1096
CviQI GTAC 2 cut(s) 183, 943
DdeI CTNAG 2 cut(s) 130, 612
DinI GGCGCC 1 cut(s) 194
DpnI GATC 6 cut(s) 123, 137, 482, 504, 544, 654
DpnII GATC 6 cut(s) 121, 135, 480, 502, 542, 652
Eam1104I CTCTTC 3 cut(s) 366, 950, 990
EarI CTCTTC 3 cut(s) 366, 950, 990
EciI GGCGGA 4 cut(s) 163, 415, 1043, 1106
Ecl136II GAGCTC 1 cut(s) 525
Eco24I GRGCYC 1 cut(s) 527
Eco47I GGWCC 1 cut(s) 530
Eco53kI GAGCTC 1 cut(s) 525
EcoICRI GAGCTC 1 cut(s) 525
EcoRII CCWGG 1 cut(s) 518
EcoT38I GRGCYC 1 cut(s) 527
EgeI GGCGCC 1 cut(s) 194
EheI GGCGCC 1 cut(s) 194
Esp3I CGTCTC 2 cut(s) 427, 783
FaeI CATG 1 cut(s) 1154
FaiI YATR 8 cut(s) 299, 710, 740, 756, 812, 814, 845, 1152
FalI AAGNNNNNCTT 2 cut(s) 987, 1019
FaqI GGGAC 1 cut(s) 943
FatI CATG 1 cut(s) 1150
FauI CCCGC 1 cut(s) 363
Fnu4HI GCNGC 4 cut(s) 45, 429, 885, 1089
FokI GGATG 5 cut(s) 369, 502, 879, 929, 1094
FriOI GRGCYC 1 cut(s) 527
Fsp4HI GCNGC 4 cut(s) 45, 429, 885, 1089
GlaI GCGC 2 cut(s) 194, 562
GluI GCNGC 4 cut(s) 45, 429, 885, 1089
GsuI CTGGAG 1 cut(s) 541
HaeII RGCGCY 1 cut(s) 196
HaeIII GGCC 1 cut(s) 876
HgaI GACGC 3 cut(s) 409, 752, 800
HhaI GCGC 2 cut(s) 195, 563
Hin1I GRCGYC 2 cut(s) 193, 819
Hin1II CATG 1 cut(s) 1154
Hin6I GCGC 2 cut(s) 193, 561
HinP1I GCGC 2 cut(s) 193, 561
HincII GTYRAC 3 cut(s) 36, 280, 1172
HindII GTYRAC 3 cut(s) 36, 280, 1172
HindIII AAGCTT 1 cut(s) 764
HphI GGTGA 6 cut(s) 45, 73, 146, 356, 479, 1070
Hpy166II GTNNAC 7 cut(s) 36, 154, 183, 185, 280, 1040, 1172
Hpy188I TCNGA 3 cut(s) 133, 265, 542
Hpy188III TCNNGA 5 cut(s) 119, 631, 643, 731, 1124
Hpy8I GTNNAC 7 cut(s) 36, 154, 183, 185, 280, 1040, 1172
Hpy99I CGWCG 7 cut(s) 166, 254, 391, 581, 632, 821, 824
HpyAV CCTTC 4 cut(s) 104, 231, 797, 980
HpyCH4III ACNGT 8 cut(s) 79, 158, 189, 380, 555, 628, 723, 934
HpyCH4IV ACGT 1 cut(s) 819
HpyF10VI GCNNNNNNNGC 3 cut(s) 569, 743, 1097
HpyF3I CTNAG 2 cut(s) 130, 612
HpySE526I ACGT 1 cut(s) 819
Hsp92I GRCGYC 2 cut(s) 193, 819
Hsp92II CATG 1 cut(s) 1154
HspAI GCGC 2 cut(s) 193, 561
KasI GGCGCC 1 cut(s) 192
KroI GCCGGC 2 cut(s) 58, 1096
KroNI GCCGGC 2 cut(s) 60, 1098
Kzo9I GATC 6 cut(s) 121, 135, 480, 502, 542, 652
LmnI GCTCC 7 cut(s) 522, 530, 569, 581, 806, 1010, 1093
LweI GCATC 1 cut(s) 990
MaeII ACGT 1 cut(s) 819
MaeIII GTNAC 6 cut(s) 79, 165, 231, 458, 1021, 1051
MalI GATC 6 cut(s) 123, 137, 482, 504, 544, 654
MboI GATC 6 cut(s) 121, 135, 480, 502, 542, 652
MboII GAAGA 9 cut(s) 81, 84, 191, 309, 353, 771, 967, 1007, 1114
MflI RGATCY 3 cut(s) 135, 542, 652
MhlI GDGCHC 1 cut(s) 527
Mly113I GGCGCC 1 cut(s) 193
MlyI GAGTC 1 cut(s) 1177
MmeI TCCRAC 2 cut(s) 730, 844
MreI CGCCGGCG 1 cut(s) 58
MroNI GCCGGC 2 cut(s) 58, 1096
MroXI GAANNNNTTC 2 cut(s) 114, 607
MseI TTAA 9 cut(s) 104, 402, 494, 687, 770, 783, 798, 825, 1005
MspR9I CCNGG 3 cut(s) 311, 520, 878
MvaI CCWGG 1 cut(s) 520
MvnI CGCG 2 cut(s) 632, 794
MwoI GCNNNNNNNGC 3 cut(s) 569, 743, 1097
NaeI GCCGGC 2 cut(s) 60, 1098
NarI GGCGCC 1 cut(s) 193
NciI CCSGG 2 cut(s) 311, 878
NdeII GATC 6 cut(s) 121, 135, 480, 502, 542, 652
NgoMIV GCCGGC 2 cut(s) 58, 1096
NlaIII CATG 1 cut(s) 1154
NlaIV GGNNCC 3 cut(s) 194, 840, 1095
NmuCI GTSAC 2 cut(s) 79, 231
NruI TCGCGA 1 cut(s) 632
PcsI WCGNNNNNNNCGW 3 cut(s) 193, 246, 727
PdiI GCCGGC 2 cut(s) 60, 1098
PdmI GAANNNNTTC 2 cut(s) 114, 607
PfeI GAWTC 9 cut(s) 26, 50, 254, 370, 412, 537, 901, 1031, 1120
PfoI TCCNGGA 1 cut(s) 518
PinAI ACCGGT 2 cut(s) 681, 1138
PkrI GCNGC 4 cut(s) 46, 430, 886, 1090
PleI GAGTC 1 cut(s) 1176
PluTI GGCGCC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 1176
Psp124BI GAGCTC 1 cut(s) 527
Psp6I CCWGG 1 cut(s) 518
PspGI CCWGG 1 cut(s) 518
PspN4I GGNNCC 3 cut(s) 194, 840, 1095
PspPI GGNCC 2 cut(s) 530, 875
PsuI RGATCY 3 cut(s) 135, 542, 652
RruI TCGCGA 1 cut(s) 632
RsaI GTAC 2 cut(s) 184, 944
RsaNI GTAC 2 cut(s) 183, 943
SacI GAGCTC 1 cut(s) 527
SaqAI TTAA 9 cut(s) 104, 402, 494, 687, 770, 783, 798, 825, 1005
SatI GCNGC 4 cut(s) 45, 429, 885, 1089
Sau3AI GATC 6 cut(s) 121, 135, 480, 502, 542, 652
Sau96I GGNCC 2 cut(s) 530, 875
SchI GAGTC 1 cut(s) 1177
ScrFI CCNGG 3 cut(s) 311, 520, 878
SduI GDGCHC 1 cut(s) 527
SfaNI GCATC 1 cut(s) 990
SfcI CTRYAG 1 cut(s) 738
SfoI GGCGCC 1 cut(s) 194
SgrAI CRCCGGYG 1 cut(s) 58
SinI GGWCC 1 cut(s) 530
SspDI GGCGCC 1 cut(s) 192
SstI GAGCTC 1 cut(s) 527
StyD4I CCNGG 3 cut(s) 309, 518, 876
TaaI ACNGT 8 cut(s) 79, 158, 189, 380, 555, 628, 723, 934
TaiI ACGT 1 cut(s) 822
TaqI TCGA 6 cut(s) 108, 252, 501, 535, 642, 730
TatI WGTACW 1 cut(s) 182
TauI GCSGC 4 cut(s) 47, 431, 887, 1091
TfiI GAWTC 9 cut(s) 26, 50, 254, 370, 412, 537, 901, 1031, 1120
Tru1I TTAA 9 cut(s) 104, 402, 494, 687, 770, 783, 798, 825, 1005
Tru9I TTAA 9 cut(s) 104, 402, 494, 687, 770, 783, 798, 825, 1005
TscAI CASTG 1 cut(s) 939
TseFI GTSAC 2 cut(s) 79, 231
Tsp45I GTSAC 2 cut(s) 79, 231
TspDTI ATGAA 2 cut(s) 105, 1139
TspGWI ACGGA 4 cut(s) 150, 219, 375, 594
TspRI CASTG 1 cut(s) 939
VpaK11BI GGWCC 1 cut(s) 530
XapI RAATTY 2 cut(s) 215, 1177
XmnI GAANNNNTTC 2 cut(s) 114, 607
ZraI GACGTC 1 cut(s) 820
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.