pycom06g01420

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Forward (+)
1439756 .. 1440901
1146 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g01420.1

Sequence Viewer

Length: 1146 bp
ATGGCAATGGCGGAGGCAGAGACTTCCAGATCTCCCTCAAAACGCACAAAACCGAGCCGAAAAGACGACCAACATCAGCCCCTCCTGCCTGGTCTGCCGGACCATATAGCTCAGGTATGCCTCTCCCTCGTCCACCCTTCCGTTTTGTTCTCCGTTTGCACCTCATGGCGCCGCCTTATCTGCTCCTCCTCTTTCCCTCCTTTTCTCTCTCTATACGCCCTCTTCTCCTCCTCCTCCTCCACCTCCGCCTCCTCTTCCTCTAATTCCATTCATTTCTACAACTTTGACCCGATCTCCTCCAACTGGCATCCCCTCCCCTCAACCCCTCCCGACCCGCCTCTCCGCCTCTTCCGAAGCCACCCCTCTTTCATCTCCCGCAACCTACCCATCCAATCCGTCTCCGAGTCCGGAAACCTAATCCTCCTCGCCGCCACTACCCACAACTTTTTCCCCGCTCTCTCTCGCCCTCTGGTCTTCGACCCAGCTGCCAGAGACTGGGCCTTCGGTCCTCCACTCACCACCCCACGCCGCTGGTGTGCAGTCGGAGCGCTGAGCGGCGTTGTCTATGTGGCGAGTGGGATGGGGTCCCACTTCTCGATCGATGTTGCGCGTTCAGTTGAGAAGTGGGACTTAAGCAAATGGAAAAAGTATCAAGTTAATTCGGATGGTTGGGAAAAAGTGAGCGGGCTTCGAGATGGAAGATTCAGCAGAGATGCGATCGACGCAGTGGGATGGAGAGGAATGCTCTGCATGGTCAATGTTAAGGGAGACACTGCAAAAGAGGGAGCTGTCTACGATGTGGAGAAGGACACGTGGCAAGACATGCCGGAAGGGATGATTGCAGGGTGGAGAGGACCGGTGGCAGCCATGGATGAGGACGTGATGTACGTGGTGGACGAGGCCAAGGGTGCCTTGAGAAGATACGATCCCAACAAGGATGTGTGGGAAGGCGTTTTCGAGTCCGAGAGGCTGAGAGGAGCTGATCAGATCGCTGCCGGAGGCGGAAGAGTATGTGTTGTTTGTGGTGGTGGGATATTTGTGGTTGACGTGTCGGCGGCGACGCCGAGGCTTTGGGCTGTGGAAACGCCTCCGGGACTAGAGGCGGTGGCGATCCATATCTTGCCCAGAATGAGCCACGCGGATTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

382

Amino Acids

41.7

Weight (kDa)

6.56

Isoelectric Point (pI)

54.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kelch_FKB95 PF25210 153 - 346 1.5e-09 FKB95, Kelch-repeats domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0011373)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 168, 908
AccB7I CCANNNNNTGG 1 cut(s) 495
AccBSI CCGCTC 3 cut(s) 455, 555, 684
AccI GTMKAC 1 cut(s) 792
AccII CGCG 2 cut(s) 610, 1139
AccIII TCCGGA 1 cut(s) 407
AclWI GGATC 2 cut(s) 920, 1105
AcvI CACGTG 1 cut(s) 813
AcyI GRCGYC 2 cut(s) 169, 1061
AfaI GTAC 1 cut(s) 887
AfeI AGCGCT 1 cut(s) 549
AfiI CCNNNNNNNGG 2 cut(s) 303, 495
AflII CTTAAG 1 cut(s) 631
AflIII ACRYGT 2 cut(s) 810, 1047
AgeI ACCGGT 1 cut(s) 856
AjiI CACGTC 2 cut(s) 880, 1048
AjnI CCWGG 1 cut(s) 88
AluBI AGCT 4 cut(s) 110, 485, 788, 980
AluI AGCT 4 cut(s) 110, 485, 788, 980
Alw26I GTCTC 4 cut(s) 14, 403, 486, 762
AlwI GGATC 2 cut(s) 920, 1105
AlwNI CAGNNNCTG 1 cut(s) 495
Aor13HI TCCGGA 1 cut(s) 407
Aor51HI AGCGCT 1 cut(s) 549
AoxI GGCC 2 cut(s) 498, 900
ApeKI GCWGC 3 cut(s) 485, 863, 992
ArsI GACNNNNNNTTYG 2 cut(s) 485, 517
AsiGI ACCGGT 1 cut(s) 856
AspLEI GCGC 3 cut(s) 171, 550, 610
AspS9I GGNCC 5 cut(s) 100, 498, 506, 585, 854
AsuC2I CCSGG 1 cut(s) 1092
AsuHPI GGTGA 1 cut(s) 508
AvaII GGWCC 4 cut(s) 100, 506, 585, 854
BanI GGYRCC 2 cut(s) 168, 908
BbrPI CACGTG 1 cut(s) 813
BbsI GAAGAC 1 cut(s) 466
BbvI GCAGC 3 cut(s) 472, 875, 979
BccI CCATC 5 cut(s) 395, 574, 659, 689, 726
BcgI CGANNNNNNTGC 2 cut(s) 467, 501
BciT130I CCWGG 1 cut(s) 90
BclI TGATCA 1 cut(s) 982
BcnI CCSGG 1 cut(s) 1092
BcoDI GTCTC 4 cut(s) 14, 403, 486, 762
BfaI CTAG 1 cut(s) 1097
BfoI RGCGCY 2 cut(s) 172, 551
BfrI CTTAAG 1 cut(s) 631
BglII AGATCT 1 cut(s) 29
BisI GCNGC 8 cut(s) 172, 429, 486, 529, 556, 864, 993, 1056
BlpI GCTNAGC 1 cut(s) 551
BlsI GCNGC 8 cut(s) 173, 430, 487, 530, 557, 865, 994, 1057
Bme1390I CCNGG 2 cut(s) 90, 1092
Bme18I GGWCC 4 cut(s) 100, 506, 585, 854
BmgBI CACGTC 2 cut(s) 880, 1048
BmgT120I GGNCC 5 cut(s) 100, 498, 506, 585, 854
BmiI GGNNCC 4 cut(s) 170, 586, 587, 910
BmrFI CCNGG 2 cut(s) 90, 1092
BmrI ACTGGG 1 cut(s) 505
BmsI GCATC 2 cut(s) 316, 703
BmuI ACTGGG 1 cut(s) 505
BpiI GAAGAC 1 cut(s) 466
BplI GAGNNNNNCTC 2 cut(s) 729, 761
Bpu10I CCTNAGC 1 cut(s) 111
Bpu1102I GCTNAGC 1 cut(s) 551
BpuEI CTTGAG 1 cut(s) 934
BpuMI CCSGG 1 cut(s) 1092
Bsa29I ATCGAT 1 cut(s) 600
BsaAI YACGTR 2 cut(s) 813, 889
BsaBI GATNNNNATC 1 cut(s) 1115
BsaHI GRCGYC 2 cut(s) 169, 1061
BsaJI CCNNGG 3 cut(s) 867, 903, 1064
BsaWI WCCGGW 2 cut(s) 407, 856
BsaXI ACNNNNNCTCC 2 cut(s) 278, 308
Bsc4I CCNNNNNNNGG 2 cut(s) 303, 495
Bse118I RCCGGY 1 cut(s) 856
Bse1I ACTGG 2 cut(s) 308, 500
Bse3DI GCAATG 1 cut(s) 12
Bse8I GATNNNNATC 1 cut(s) 1115
BseAI TCCGGA 1 cut(s) 407
BseBI CCWGG 1 cut(s) 90
BseCI ATCGAT 1 cut(s) 600
BseDI CCNNGG 3 cut(s) 867, 903, 1064
BseGI GGATG 8 cut(s) 307, 387, 585, 670, 737, 840, 877, 943
BseJI GATNNNNATC 1 cut(s) 1115
BseLI CCNNNNNNNGG 2 cut(s) 303, 495
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 3 cut(s) 125, 542, 962
BseNI ACTGG 2 cut(s) 308, 500
BseXI GCAGC 3 cut(s) 472, 875, 979
BseYI CCCAGC 1 cut(s) 481
BsgI GTGCAG 1 cut(s) 558
Bsh1236I CGCG 2 cut(s) 610, 1139
Bsh1285I CGRYCG 2 cut(s) 600, 720
BshFI GGCC 2 cut(s) 500, 902
BshNI GGYRCC 2 cut(s) 168, 908
BshTI ACCGGT 1 cut(s) 856
BshVI ATCGAT 1 cut(s) 600
BsiEI CGRYCG 2 cut(s) 600, 720
BsiSI CCGG 6 cut(s) 98, 408, 827, 857, 996, 1091
BslFI GGGAC 3 cut(s) 571, 641, 1107
BslI CCNNNNNNNGG 2 cut(s) 303, 495
BsmAI GTCTC 4 cut(s) 14, 403, 486, 762
BsmBI CGTCTC 1 cut(s) 403
BsmFI GGGAC 3 cut(s) 571, 641, 1107
BsmI GAATGC 1 cut(s) 747
BsnI GGCC 2 cut(s) 500, 902
Bsp13I TCCGGA 1 cut(s) 407
Bsp143I GATC 8 cut(s) 29, 291, 597, 717, 925, 982, 987, 1110
Bsp1720I GCTNAGC 1 cut(s) 551
Bsp19I CCATGG 1 cut(s) 867
BspANI GGCC 2 cut(s) 500, 902
BspCNI CTCAG 3 cut(s) 124, 543, 963
BspDI ATCGAT 1 cut(s) 600
BspEI TCCGGA 1 cut(s) 407
BspFNI CGCG 2 cut(s) 610, 1139
BspLI GGNNCC 4 cut(s) 170, 586, 587, 910
BspPI GGATC 2 cut(s) 920, 1105
BspT107I GGYRCC 2 cut(s) 168, 908
BspTI CTTAAG 1 cut(s) 631
BsrBI CCGCTC 3 cut(s) 455, 555, 684
BsrDI GCAATG 1 cut(s) 12
BsrFI RCCGGY 1 cut(s) 856
BsrI ACTGG 2 cut(s) 308, 500
BssAI RCCGGY 1 cut(s) 856
BssECI CCNNGG 3 cut(s) 867, 903, 1064
BssMI GATC 8 cut(s) 29, 291, 597, 717, 925, 982, 987, 1110
BssNI GRCGYC 2 cut(s) 169, 1061
BssT1I CCWWGG 2 cut(s) 867, 903
Bst2UI CCWGG 1 cut(s) 90
Bst6I CTCTTC 4 cut(s) 227, 259, 353, 1000
BstACI GRCGYC 2 cut(s) 169, 1061
BstAFI CTTAAG 1 cut(s) 631
BstAPI GCANNNNNTGC 1 cut(s) 823
BstBAI YACGTR 2 cut(s) 813, 889
BstC8I GCNNGC 1 cut(s) 686
BstDEI CTNAG 3 cut(s) 111, 551, 971
BstDSI CCRYGG 1 cut(s) 867
BstF5I GGATG 8 cut(s) 307, 387, 585, 670, 737, 840, 877, 943
BstFNI CGCG 2 cut(s) 610, 1139
BstH2I RGCGCY 2 cut(s) 172, 551
BstHHI GCGC 3 cut(s) 171, 550, 610
BstKTI GATC 8 cut(s) 32, 294, 600, 720, 928, 985, 990, 1113
BstMAI GTCTC 4 cut(s) 14, 403, 486, 762
BstMBI GATC 8 cut(s) 29, 291, 597, 717, 925, 982, 987, 1110
BstMCI CGRYCG 2 cut(s) 600, 720
BstMWI GCNNNNNNNGC 7 cut(s) 85, 94, 180, 545, 722, 823, 908
BstNI CCWGG 1 cut(s) 90
BstNSI RCATGY 1 cut(s) 826
BstSCI CCNGG 2 cut(s) 88, 1090
BstUI CGCG 2 cut(s) 610, 1139
BstV1I GCAGC 3 cut(s) 472, 875, 979
BstV2I GAAGAC 1 cut(s) 466
BstX2I RGATCY 1 cut(s) 29
BstXI CCANNNNNNTGG 1 cut(s) 531
BstYI RGATCY 1 cut(s) 29
Bsu15I ATCGAT 1 cut(s) 600
BsuRI GGCC 2 cut(s) 500, 902
BsuTUI ATCGAT 1 cut(s) 600
BtgI CCRYGG 1 cut(s) 867
BtrI CACGTC 2 cut(s) 880, 1048
BtsCI GGATG 8 cut(s) 307, 387, 585, 670, 737, 840, 877, 943
BtsI GCAGTG 2 cut(s) 732, 771
BtsIMutI CAGTG 2 cut(s) 732, 771
Cac8I GCNNGC 1 cut(s) 686
CaiI CAGNNNCTG 1 cut(s) 495
CfoI GCGC 3 cut(s) 171, 550, 610
Cfr10I RCCGGY 1 cut(s) 856
Cfr13I GGNCC 5 cut(s) 100, 498, 506, 585, 854
ClaI ATCGAT 1 cut(s) 600
CseI GACGC 2 cut(s) 731, 1069
Csp6I GTAC 1 cut(s) 886
CspAI ACCGGT 1 cut(s) 856
CspCI CAANNNNNGTGG 1 cut(s) 1124
CviAII CATG 4 cut(s) 165, 751, 823, 868
CviQI GTAC 1 cut(s) 886
DdeI CTNAG 3 cut(s) 111, 551, 971
DinI GGCGCC 1 cut(s) 170
DpnI GATC 8 cut(s) 31, 293, 599, 719, 927, 984, 989, 1112
DpnII GATC 8 cut(s) 29, 291, 597, 717, 925, 982, 987, 1110
Eam1104I CTCTTC 4 cut(s) 227, 259, 353, 1000
EarI CTCTTC 4 cut(s) 227, 259, 353, 1000
EciI GGCGGA 4 cut(s) 26, 235, 332, 1017
Eco130I CCWWGG 2 cut(s) 867, 903
Eco47I GGWCC 4 cut(s) 100, 506, 585, 854
Eco47III AGCGCT 1 cut(s) 549
Eco72I CACGTG 1 cut(s) 813
EcoO109I RGGNCCY 1 cut(s) 585
EcoRII CCWGG 1 cut(s) 88
EcoT14I CCWWGG 2 cut(s) 867, 903
EgeI GGCGCC 1 cut(s) 170
EheI GGCGCC 1 cut(s) 170
ErhI CCWWGG 2 cut(s) 867, 903
Esp3I CGTCTC 1 cut(s) 403
FaeI CATG 4 cut(s) 168, 754, 826, 871
FalI AAGNNNNNCTT 4 cut(s) 614, 646, 896, 928
FaqI GGGAC 3 cut(s) 571, 641, 1107
FatI CATG 4 cut(s) 164, 750, 822, 867
FauI CCCGC 4 cut(s) 342, 383, 460, 677
FbaI TGATCA 1 cut(s) 982
FblI GTMKAC 1 cut(s) 792
Fnu4HI GCNGC 8 cut(s) 172, 429, 486, 529, 556, 864, 993, 1056
FokI GGATG 8 cut(s) 294, 374, 592, 677, 744, 847, 884, 950
Fsp4HI GCNGC 8 cut(s) 172, 429, 486, 529, 556, 864, 993, 1056
FspBI CTAG 1 cut(s) 1097
GlaI GCGC 3 cut(s) 170, 549, 609
GluI GCNGC 8 cut(s) 172, 429, 486, 529, 556, 864, 993, 1056
GsaI CCCAGC 1 cut(s) 485
HaeII RGCGCY 2 cut(s) 172, 551
HaeIII GGCC 2 cut(s) 500, 902
HapII CCGG 6 cut(s) 98, 408, 827, 857, 996, 1091
HgaI GACGC 2 cut(s) 731, 1069
HhaI GCGC 3 cut(s) 171, 550, 610
Hin1I GRCGYC 2 cut(s) 169, 1061
Hin1II CATG 4 cut(s) 168, 754, 826, 871
Hin6I GCGC 3 cut(s) 169, 548, 608
HinP1I GCGC 3 cut(s) 169, 548, 608
HincII GTYRAC 1 cut(s) 1045
HindII GTYRAC 1 cut(s) 1045
HinfI GANTC 3 cut(s) 404, 702, 959
HpaII CCGG 6 cut(s) 98, 408, 827, 857, 996, 1091
HphI GGTGA 1 cut(s) 508
Hpy166II GTNNAC 4 cut(s) 133, 793, 895, 1045
Hpy188I TCNGA 6 cut(s) 353, 403, 545, 664, 964, 987
Hpy188III TCNNGA 5 cut(s) 27, 329, 408, 595, 692
Hpy8I GTNNAC 4 cut(s) 133, 793, 895, 1045
Hpy99I CGWCG 2 cut(s) 725, 1063
HpyAV CCTTC 5 cut(s) 147, 511, 799, 824, 941
HpyCH4IV ACGT 4 cut(s) 812, 879, 888, 1047
HpyCH4V TGCA 5 cut(s) 159, 539, 750, 776, 842
HpyF10VI GCNNNNNNNGC 7 cut(s) 85, 94, 180, 545, 722, 823, 908
HpyF3I CTNAG 3 cut(s) 111, 551, 971
HpySE526I ACGT 4 cut(s) 812, 879, 888, 1047
Hsp92I GRCGYC 2 cut(s) 169, 1061
Hsp92II CATG 4 cut(s) 168, 754, 826, 871
HspAI GCGC 3 cut(s) 169, 548, 608
KasI GGCGCC 1 cut(s) 168
KflI GGGWCCC 1 cut(s) 585
Kpn2I TCCGGA 1 cut(s) 407
Ksp22I TGATCA 1 cut(s) 982
Kzo9I GATC 8 cut(s) 29, 291, 597, 717, 925, 982, 987, 1110
LmnI GCTCC 4 cut(s) 188, 545, 785, 977
Lsp1109I GCAGC 3 cut(s) 472, 875, 979
LweI GCATC 2 cut(s) 316, 703
MaeI CTAG 1 cut(s) 1097
MaeII ACGT 4 cut(s) 812, 879, 888, 1047
MalI GATC 8 cut(s) 31, 293, 599, 719, 927, 984, 989, 1112
MbiI CCGCTC 3 cut(s) 455, 555, 684
MboI GATC 8 cut(s) 29, 291, 597, 717, 925, 982, 987, 1110
MboII GAAGA 7 cut(s) 214, 246, 340, 466, 711, 930, 1017
MflI RGATCY 1 cut(s) 29
MluCI AATT 2 cut(s) 262, 658
Mly113I GGCGCC 1 cut(s) 169
MlyI GAGTC 2 cut(s) 413, 968
MmeI TCCRAC 2 cut(s) 324, 523
MroI TCCGGA 1 cut(s) 407
MseI TTAA 3 cut(s) 632, 657, 762
MspA1I CMGCKG 2 cut(s) 485, 531
MspCI CTTAAG 1 cut(s) 631
MspI CCGG 6 cut(s) 98, 408, 827, 857, 996, 1091
MspR9I CCNGG 2 cut(s) 90, 1092
Mva1269I GAATGC 1 cut(s) 747
MvaI CCWGG 1 cut(s) 90
MvnI CGCG 2 cut(s) 610, 1139
MwoI GCNNNNNNNGC 7 cut(s) 85, 94, 180, 545, 722, 823, 908
NarI GGCGCC 1 cut(s) 169
NciI CCSGG 1 cut(s) 1092
NcoI CCATGG 1 cut(s) 867
NdeII GATC 8 cut(s) 29, 291, 597, 717, 925, 982, 987, 1110
NlaIII CATG 4 cut(s) 168, 754, 826, 871
NlaIV GGNNCC 4 cut(s) 170, 586, 587, 910
NmeAIII GCCGAG 1 cut(s) 1089
NspI RCATGY 1 cut(s) 826
PcsI WCGNNNNNNNCGW 2 cut(s) 885, 894
PctI GAATGC 1 cut(s) 747
PfeI GAWTC 1 cut(s) 702
PflMI CCANNNNNTGG 1 cut(s) 495
PfoI TCCNGGA 1 cut(s) 1090
PinAI ACCGGT 1 cut(s) 856
PkrI GCNGC 8 cut(s) 173, 430, 487, 530, 557, 865, 994, 1057
Ple19I CGATCG 2 cut(s) 600, 720
PleI GAGTC 2 cut(s) 412, 967
PluTI GGCGCC 1 cut(s) 172
PmaCI CACGTG 1 cut(s) 813
PmlI CACGTG 1 cut(s) 813
PpsI GAGTC 2 cut(s) 412, 967
Ppu21I YACGTR 2 cut(s) 813, 889
PpuMI RGGWCCY 1 cut(s) 585
Psp5II RGGWCCY 1 cut(s) 585
Psp6I CCWGG 1 cut(s) 88
PspCI CACGTG 1 cut(s) 813
PspFI CCCAGC 1 cut(s) 481
PspGI CCWGG 1 cut(s) 88
PspN4I GGNNCC 4 cut(s) 170, 586, 587, 910
PspPI GGNCC 5 cut(s) 100, 498, 506, 585, 854
PspPPI RGGWCCY 1 cut(s) 585
PstNI CAGNNNCTG 1 cut(s) 495
PsuI RGATCY 1 cut(s) 29
PvuI CGATCG 2 cut(s) 600, 720
PvuII CAGCTG 1 cut(s) 485
RsaI GTAC 1 cut(s) 887
RsaNI GTAC 1 cut(s) 886
SaqAI TTAA 3 cut(s) 632, 657, 762
SatI GCNGC 8 cut(s) 172, 429, 486, 529, 556, 864, 993, 1056
Sau3AI GATC 8 cut(s) 29, 291, 597, 717, 925, 982, 987, 1110
Sau96I GGNCC 5 cut(s) 100, 498, 506, 585, 854
SchI GAGTC 2 cut(s) 413, 968
ScrFI CCNGG 2 cut(s) 90, 1092
SfaNI GCATC 2 cut(s) 316, 703
SfoI GGCGCC 1 cut(s) 170
SinI GGWCC 4 cut(s) 100, 506, 585, 854
SmlI CTYRAG 2 cut(s) 631, 913
SmoI CTYRAG 2 cut(s) 631, 913
Sse9I AATT 2 cut(s) 262, 658
SspDI GGCGCC 1 cut(s) 168
SspMI CTAG 1 cut(s) 1097
StyD4I CCNGG 2 cut(s) 88, 1090
StyI CCWWGG 2 cut(s) 867, 903
TaiI ACGT 4 cut(s) 815, 882, 891, 1050
TaqI TCGA 6 cut(s) 477, 596, 600, 691, 720, 957
TaqII GACCGA 1 cut(s) 494
TasI AATT 2 cut(s) 262, 658
TauI GCSGC 5 cut(s) 174, 431, 531, 558, 1058
TfiI GAWTC 1 cut(s) 702
Tru1I TTAA 3 cut(s) 632, 657, 762
Tru9I TTAA 3 cut(s) 632, 657, 762
TscAI CASTG 2 cut(s) 732, 778
TseI GCWGC 3 cut(s) 485, 863, 992
TspDTI ATGAA 2 cut(s) 260, 358
TspGWI ACGGA 3 cut(s) 130, 142, 385
TspRI CASTG 2 cut(s) 732, 778
Van91I CCANNNNNTGG 1 cut(s) 495
Vha464I CTTAAG 1 cut(s) 631
VpaK11BI GGWCC 4 cut(s) 100, 506, 585, 854
XceI RCATGY 1 cut(s) 826
XmiI GTMKAC 1 cut(s) 792
XspI CTAG 1 cut(s) 1097
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.