Prupe.5G018500_v2.0.a1

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0011373
Physical Location & Seq
Reverse (-)
1998002 .. 1999723
1722 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G018500.1

Sequence Viewer

Length: 1131 bp
ATGGCAGACAGCTCCAGATCTCCCACAAAACGCCCAAGACTGAGTCAAAACGACGTCGTCGGTCACGGCCATCAGCCCCTCCTTCCTGGGCTGCCCGACGACATAGCCCAAGTTTGCCTCTCCCTTGTCCACCCTTCCGTTTTGTTCTCCGTTTGCACCTCATGGCGTCGCCTTATTTACTCCTCCTCCTTCCCTCCTTTCCTCTCTTTGTATGCTCTCTTGACCTCCTCATCTTCCCCCAATTCCATCCAATTCTACAGCTTTGACCCGCTCTCATCCAACTGGCACGCCCTTCCCGCCACTCCCCCGGATCCACCTCTCCGCCTCTTCCTCCGCCACCCTTCTTTCATCTCCCGCAACCTCCCCATCCAATCCGTCTCCGTCTCCGGCAACCTCGTCCTCGTCGCCGCCACCACTAGCAATCTTCTCCCGGCTCTCCCTCGCCCTCTGGTTTTCGACCCAGTTGCTAAAAAATGGGCTTTTGGTCCACCACTCGCCACGCCGCGTCGCTGGTGCTCGGCTGGAGCGCTAGGCGGCGCAGTCTATGTGGCCAGTGGGATTGGGTCCCACTTCTCCATCGACGTTGCGCGTTCTGTGGAGAAGTGGGACTTAACCAAAAACAAAAAGCATCCGAATGATCACTTGGGATGGGAGTGGGAGAAAGCTAGAGGGCTTAGAGATGGGAGATTCAGCAGAGACGCGATCGAGGCAGTGGGATGGAGAGGGAAGCTCTGCATGGTGAATCTCAAAGGGGACGCCGTGAAAGAGGGACTTATGTACGATGTGGAGAAGGACACGTGGCAAGACATGCCGGAAGGGATGATTGGAGGGTGGAAGGGGCCGGTGGCAGCCATGGATGAGGAAGTTATGTACGTGGTGGATGAGGCCAAGGGTGCCTTGAGAAGATACAATCCTGAGAAGGATGTGTGGGTGGAGATTTTGGAGTCGGAGAGGCTGATAGGGGCCGATCAGATCGCCGGCGGAGGTGGAAGAGTGTGCGTTGTTTGTCGTGGCAAGATTTTAGTGGTGGATGTTACGGCAGCGCCGCCGAGCTTTCGGGATGTGAAAACGCCGTTGGGACTGGAAGCGGTGGCGATTCATATCTTGCCCAGAATGAGCCACGCTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0008150 GO:0009628 GO:0031461 GO:0031463 GO:0032991 GO:0044424 GO:0044464 GO:0050896 GO:0080167 GO:1902494 GO:1990234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Kelch_6

Protein Analysis

377

Amino Acids

41.15

Weight (kDa)

8.68

Isoelectric Point (pI)

54.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011373)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31350 AT1G31350
fragaria_vesca FvH4_5g24190
malus_domestica MD06G1017400.v1.1 MD06G1017500.v1.1 MD07G1079500.v1.1
prunus_persica Prupe.2G102300_v2.0.a1 Prupe.2G102400_v2.0.a1 Prupe.5G018500_v2.0.a1
pyrus_communis pycom06g01420
rosa_chinensis RchiOBHm_Chr7g0213971
rosa_laevigata RLG00000002765
rosa_multiflora Rmu_sc0000328.1_g000002
rosa_roxburghii Rroxscaffold_3G00245610
rosa_rugosa Rorug07G0145100
rosa_samantha Rh7AG278400 Rh7BG271900 Rh7CG297400 Rh7DG283900
rosa_wichuraiana Rw7G023950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 57
AccB1I GGYRCC 1 cut(s) 893
AccBSI CCGCTC 1 cut(s) 271
AccII CGCG 3 cut(s) 505, 589, 701
AclWI GGATC 2 cut(s) 305, 318
AcoI YGGCCR 2 cut(s) 67, 549
AcvI CACGTG 1 cut(s) 798
AcyI GRCGYC 3 cut(s) 54, 166, 756
AfaI GTAC 2 cut(s) 779, 872
AfeI AGCGCT 1 cut(s) 528
AflIII ACRYGT 1 cut(s) 795
AjnI CCWGG 1 cut(s) 85
AjuI GAANNNNNNNTTGG 6 cut(s) 626, 658, 807, 839, 1058, 1090
AluBI AGCT 5 cut(s) 12, 261, 665, 730, 1053
AluI AGCT 5 cut(s) 12, 261, 665, 730, 1053
Alw21I GWGCWC 1 cut(s) 518
Alw26I GTCTC 3 cut(s) 382, 388, 690
AlwI GGATC 2 cut(s) 305, 318
Aor51HI AGCGCT 1 cut(s) 528
AoxI GGCC 5 cut(s) 67, 549, 839, 885, 963
ApeKI GCWGC 3 cut(s) 91, 848, 1040
AspLEI GCGC 4 cut(s) 529, 539, 589, 1045
AspS9I GGNCC 4 cut(s) 485, 564, 839, 963
AsuC2I CCSGG 2 cut(s) 308, 431
AsuHPI GGTGA 1 cut(s) 751
AvaII GGWCC 2 cut(s) 485, 564
BalI TGGCCA 1 cut(s) 551
BamHI GGATCC 1 cut(s) 310
BanI GGYRCC 1 cut(s) 893
BbrPI CACGTG 1 cut(s) 798
Bbv12I GWGCWC 1 cut(s) 518
BbvI GCAGC 3 cut(s) 78, 860, 1052
BccI CCATC 7 cut(s) 78, 254, 374, 584, 642, 674, 711
BceAI ACGGC 4 cut(s) 82, 743, 1053, 1057
BcgI CGANNNNNNTGC 2 cut(s) 446, 480
BciT130I CCWGG 1 cut(s) 87
BclI TGATCA 1 cut(s) 637
BcnI CCSGG 2 cut(s) 308, 431
BcoDI GTCTC 3 cut(s) 382, 388, 690
BfaI CTAG 3 cut(s) 417, 530, 666
BfmI CTRYAG 1 cut(s) 256
BfoI RGCGCY 2 cut(s) 530, 1046
BglII AGATCT 1 cut(s) 17
BisI GCNGC 7 cut(s) 92, 408, 503, 535, 849, 1041, 1046
BlsI GCNGC 7 cut(s) 93, 409, 504, 536, 850, 1042, 1047
Bme1390I CCNGG 3 cut(s) 87, 308, 431
Bme18I GGWCC 2 cut(s) 485, 564
BmgT120I GGNCC 4 cut(s) 485, 564, 839, 963
BmiI GGNNCC 6 cut(s) 312, 565, 566, 840, 895, 964
BmrFI CCNGG 3 cut(s) 87, 308, 431
BmrI ACTGGG 1 cut(s) 455
BmsI GCATC 1 cut(s) 637
BmuI ACTGGG 1 cut(s) 455
BplI GAGNNNNNCTC 2 cut(s) 714, 746
BpmI CTGGAG 1 cut(s) 543
BpuEI CTTGAG 1 cut(s) 919
BpuMI CCSGG 2 cut(s) 308, 431
BsaAI YACGTR 2 cut(s) 798, 874
BsaBI GATNNNNATC 1 cut(s) 1100
BsaHI GRCGYC 3 cut(s) 54, 166, 756
BsaJI CCNNGG 4 cut(s) 86, 306, 852, 888
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bse118I RCCGGY 2 cut(s) 841, 977
Bse1I ACTGG 4 cut(s) 287, 461, 552, 1086
Bse8I GATNNNNATC 1 cut(s) 1100
BseBI CCWGG 1 cut(s) 87
BseDI CCNNGG 4 cut(s) 86, 306, 852, 888
BseJI GATNNNNATC 1 cut(s) 1100
BseMII CTCAG 2 cut(s) 32, 906
BseNI ACTGG 4 cut(s) 287, 461, 552, 1086
BseRI GAGGAG 3 cut(s) 172, 175, 217
BseXI GCAGC 3 cut(s) 78, 860, 1052
Bsh1236I CGCG 3 cut(s) 505, 589, 701
Bsh1285I CGRYCG 1 cut(s) 705
BshFI GGCC 5 cut(s) 69, 551, 841, 887, 965
BshNI GGYRCC 1 cut(s) 893
BsiEI CGRYCG 1 cut(s) 705
BsiHKAI GWGCWC 1 cut(s) 518
BsiSI CCGG 6 cut(s) 308, 387, 431, 812, 842, 978
BslFI GGGAC 5 cut(s) 550, 620, 767, 783, 1092
BsmAI GTCTC 3 cut(s) 382, 388, 690
BsmBI CGTCTC 3 cut(s) 382, 388, 690
BsmFI GGGAC 5 cut(s) 550, 620, 767, 783, 1092
BsnI GGCC 5 cut(s) 69, 551, 841, 887, 965
Bsp1286I GDGCHC 1 cut(s) 518
Bsp143I GATC 6 cut(s) 17, 310, 637, 702, 967, 972
Bsp19I CCATGG 1 cut(s) 852
BspANI GGCC 5 cut(s) 69, 551, 841, 887, 965
BspCNI CTCAG 2 cut(s) 33, 907
BspFNI CGCG 3 cut(s) 505, 589, 701
BspLI GGNNCC 6 cut(s) 312, 565, 566, 840, 895, 964
BspPI GGATC 2 cut(s) 305, 318
BspT107I GGYRCC 1 cut(s) 893
BsrBI CCGCTC 1 cut(s) 271
BsrFI RCCGGY 2 cut(s) 841, 977
BsrI ACTGG 4 cut(s) 287, 461, 552, 1086
BssAI RCCGGY 2 cut(s) 841, 977
BssECI CCNNGG 4 cut(s) 86, 306, 852, 888
BssMI GATC 6 cut(s) 17, 310, 637, 702, 967, 972
BssNI GRCGYC 3 cut(s) 54, 166, 756
BssT1I CCWWGG 2 cut(s) 852, 888
Bst2UI CCWGG 1 cut(s) 87
Bst6I CTCTTC 2 cut(s) 332, 985
BstACI GRCGYC 3 cut(s) 54, 166, 756
BstAPI GCANNNNNTGC 1 cut(s) 808
BstBAI YACGTR 2 cut(s) 798, 874
BstC8I GCNNGC 2 cut(s) 288, 979
BstDEI CTNAG 3 cut(s) 41, 674, 915
BstDSI CCRYGG 1 cut(s) 852
BstFNI CGCG 3 cut(s) 505, 589, 701
BstH2I RGCGCY 2 cut(s) 530, 1046
BstHHI GCGC 4 cut(s) 529, 539, 589, 1045
BstKTI GATC 6 cut(s) 20, 313, 640, 705, 970, 975
BstMAI GTCTC 3 cut(s) 382, 388, 690
BstMBI GATC 6 cut(s) 17, 310, 637, 702, 967, 972
BstMCI CGRYCG 1 cut(s) 705
BstMWI GCNNNNNNNGC 4 cut(s) 296, 707, 808, 893
BstNI CCWGG 1 cut(s) 87
BstNSI RCATGY 1 cut(s) 811
BstSCI CCNGG 3 cut(s) 85, 306, 429
BstSFI CTRYAG 1 cut(s) 256
BstUI CGCG 3 cut(s) 505, 589, 701
BstV1I GCAGC 3 cut(s) 78, 860, 1052
BstX2I RGATCY 2 cut(s) 17, 310
BstYI RGATCY 2 cut(s) 17, 310
BsuRI GGCC 5 cut(s) 69, 551, 841, 887, 965
BtgI CCRYGG 1 cut(s) 852
BtsI GCAGTG 1 cut(s) 717
BtsIMutI CAGTG 2 cut(s) 559, 717
Cac8I GCNNGC 2 cut(s) 288, 979
CfoI GCGC 4 cut(s) 529, 539, 589, 1045
Cfr10I RCCGGY 2 cut(s) 841, 977
Cfr13I GGNCC 4 cut(s) 485, 564, 839, 963
CseI GACGC 4 cut(s) 155, 494, 707, 764
Csp6I GTAC 2 cut(s) 778, 871
CspCI CAANNNNNGTGG 1 cut(s) 1109
CviAII CATG 4 cut(s) 162, 736, 808, 853
CviQI GTAC 2 cut(s) 778, 871
DdeI CTNAG 3 cut(s) 41, 674, 915
DpnI GATC 6 cut(s) 19, 312, 639, 704, 969, 974
DpnII GATC 6 cut(s) 17, 310, 637, 702, 967, 972
EaeI YGGCCR 2 cut(s) 67, 549
Eam1104I CTCTTC 2 cut(s) 332, 985
EarI CTCTTC 2 cut(s) 332, 985
EciI GGCGGA 3 cut(s) 311, 323, 996
Eco130I CCWWGG 2 cut(s) 852, 888
Eco47I GGWCC 2 cut(s) 485, 564
Eco47III AGCGCT 1 cut(s) 528
Eco72I CACGTG 1 cut(s) 798
EcoO109I RGGNCCY 1 cut(s) 564
EcoRII CCWGG 1 cut(s) 85
EcoT14I CCWWGG 2 cut(s) 852, 888
ErhI CCWWGG 2 cut(s) 852, 888
Esp3I CGTCTC 3 cut(s) 382, 388, 690
FaeI CATG 4 cut(s) 165, 739, 811, 856
FalI AAGNNNNNCTT 6 cut(s) 593, 625, 756, 788, 881, 913
FaqI GGGAC 5 cut(s) 550, 620, 767, 783, 1092
FatI CATG 4 cut(s) 161, 735, 807, 852
FauI CCCGC 3 cut(s) 276, 304, 362
FbaI TGATCA 1 cut(s) 637
Fnu4HI GCNGC 7 cut(s) 92, 408, 503, 535, 849, 1041, 1046
Fsp4HI GCNGC 7 cut(s) 92, 408, 503, 535, 849, 1041, 1046
FspBI CTAG 3 cut(s) 417, 530, 666
GlaI GCGC 4 cut(s) 528, 538, 588, 1044
GluI GCNGC 7 cut(s) 92, 408, 503, 535, 849, 1041, 1046
GsuI CTGGAG 1 cut(s) 543
HaeII RGCGCY 2 cut(s) 530, 1046
HaeIII GGCC 5 cut(s) 69, 551, 841, 887, 965
HapII CCGG 6 cut(s) 308, 387, 431, 812, 842, 978
HgaI GACGC 4 cut(s) 155, 494, 707, 764
HhaI GCGC 4 cut(s) 529, 539, 589, 1045
Hin1I GRCGYC 3 cut(s) 54, 166, 756
Hin1II CATG 4 cut(s) 165, 739, 811, 856
Hin6I GCGC 4 cut(s) 527, 537, 587, 1043
HinP1I GCGC 4 cut(s) 527, 537, 587, 1043
HinfI GANTC 5 cut(s) 43, 687, 742, 944, 1096
HpaII CCGG 6 cut(s) 308, 387, 431, 812, 842, 978
HphI GGTGA 1 cut(s) 751
Hpy166II GTNNAC 2 cut(s) 130, 488
Hpy188I TCNGA 3 cut(s) 633, 949, 972
Hpy188III TCNNGA 4 cut(s) 15, 220, 914, 1058
Hpy8I GTNNAC 2 cut(s) 130, 488
Hpy99I CGWCG 8 cut(s) 56, 59, 62, 101, 171, 407, 510, 584
HpyAV CCTTC 9 cut(s) 92, 144, 199, 302, 351, 784, 809, 829, 913
HpyCH4IV ACGT 4 cut(s) 54, 582, 797, 873
HpyCH4V TGCA 2 cut(s) 156, 735
HpyF10VI GCNNNNNNNGC 4 cut(s) 296, 707, 808, 893
HpyF3I CTNAG 3 cut(s) 41, 674, 915
HpySE526I ACGT 4 cut(s) 54, 582, 797, 873
Hsp92I GRCGYC 3 cut(s) 54, 166, 756
Hsp92II CATG 4 cut(s) 165, 739, 811, 856
HspAI GCGC 4 cut(s) 527, 537, 587, 1043
KflI GGGWCCC 1 cut(s) 564
KroI GCCGGC 1 cut(s) 977
KroNI GCCGGC 1 cut(s) 979
Ksp22I TGATCA 1 cut(s) 637
Kzo9I GATC 6 cut(s) 17, 310, 637, 702, 967, 972
LmnI GCTCC 2 cut(s) 17, 524
Lsp1109I GCAGC 3 cut(s) 78, 860, 1052
LweI GCATC 1 cut(s) 637
MaeI CTAG 3 cut(s) 417, 530, 666
MaeII ACGT 4 cut(s) 54, 582, 797, 873
MaeIII GTNAC 2 cut(s) 62, 1033
MalI GATC 6 cut(s) 19, 312, 639, 704, 969, 974
MbiI CCGCTC 1 cut(s) 271
MboI GATC 6 cut(s) 17, 310, 637, 702, 967, 972
MboII GAAGA 5 cut(s) 225, 319, 416, 915, 1002
MflI RGATCY 2 cut(s) 17, 310
MhlI GDGCHC 1 cut(s) 518
MlsI TGGCCA 1 cut(s) 551
MluCI AATT 2 cut(s) 241, 251
MluNI TGGCCA 1 cut(s) 551
MlyI GAGTC 2 cut(s) 52, 953
MmeI TCCRAC 2 cut(s) 303, 927
Mox20I TGGCCA 1 cut(s) 551
MreI CGCCGGCG 1 cut(s) 977
MroNI GCCGGC 1 cut(s) 977
MscI TGGCCA 1 cut(s) 551
MseI TTAA 1 cut(s) 611
MslI CAYNNNNRTG 1 cut(s) 633
Msp20I TGGCCA 1 cut(s) 551
MspI CCGG 6 cut(s) 308, 387, 431, 812, 842, 978
MspR9I CCNGG 3 cut(s) 87, 308, 431
MvaI CCWGG 1 cut(s) 87
MvnI CGCG 3 cut(s) 505, 589, 701
MwoI GCNNNNNNNGC 4 cut(s) 296, 707, 808, 893
NaeI GCCGGC 1 cut(s) 979
NciI CCSGG 2 cut(s) 308, 431
NcoI CCATGG 1 cut(s) 852
NdeII GATC 6 cut(s) 17, 310, 637, 702, 967, 972
NgoMIV GCCGGC 1 cut(s) 977
NlaIII CATG 4 cut(s) 165, 739, 811, 856
NlaIV GGNNCC 6 cut(s) 312, 565, 566, 840, 895, 964
NmeAIII GCCGAG 2 cut(s) 497, 1074
NmuCI GTSAC 1 cut(s) 62
NspI RCATGY 1 cut(s) 811
PdiI GCCGGC 1 cut(s) 979
PfeI GAWTC 3 cut(s) 687, 742, 1096
PflFI GACNNNGTC 2 cut(s) 42, 56
PkrI GCNGC 7 cut(s) 93, 409, 504, 536, 850, 1042, 1047
Ple19I CGATCG 1 cut(s) 705
PleI GAGTC 2 cut(s) 51, 952
PmaCI CACGTG 1 cut(s) 798
PmlI CACGTG 1 cut(s) 798
PpsI GAGTC 2 cut(s) 51, 952
Ppu21I YACGTR 2 cut(s) 798, 874
PpuMI RGGWCCY 1 cut(s) 564
Psp5II RGGWCCY 1 cut(s) 564
Psp6I CCWGG 1 cut(s) 85
PspCI CACGTG 1 cut(s) 798
PspGI CCWGG 1 cut(s) 85
PspN4I GGNNCC 6 cut(s) 312, 565, 566, 840, 895, 964
PspPI GGNCC 4 cut(s) 485, 564, 839, 963
PspPPI RGGWCCY 1 cut(s) 564
PsuI RGATCY 2 cut(s) 17, 310
PsyI GACNNNGTC 2 cut(s) 42, 56
PvuI CGATCG 1 cut(s) 705
RsaI GTAC 2 cut(s) 779, 872
RsaNI GTAC 2 cut(s) 778, 871
RseI CAYNNNNRTG 1 cut(s) 633
SaqAI TTAA 1 cut(s) 611
SatI GCNGC 7 cut(s) 92, 408, 503, 535, 849, 1041, 1046
Sau3AI GATC 6 cut(s) 17, 310, 637, 702, 967, 972
Sau96I GGNCC 4 cut(s) 485, 564, 839, 963
SchI GAGTC 2 cut(s) 52, 953
ScrFI CCNGG 3 cut(s) 87, 308, 431
SduI GDGCHC 1 cut(s) 518
SfaNI GCATC 1 cut(s) 637
SfcI CTRYAG 1 cut(s) 256
SgrAI CRCCGGYG 1 cut(s) 977
SinI GGWCC 2 cut(s) 485, 564
SmiMI CAYNNNNRTG 1 cut(s) 633
SmlI CTYRAG 1 cut(s) 898
SmoI CTYRAG 1 cut(s) 898
Sse9I AATT 2 cut(s) 241, 251
SspMI CTAG 3 cut(s) 417, 530, 666
StyD4I CCNGG 3 cut(s) 85, 306, 429
StyI CCWWGG 2 cut(s) 852, 888
TaiI ACGT 4 cut(s) 57, 585, 800, 876
TaqI TCGA 3 cut(s) 456, 579, 705
TaqII GACCGA 1 cut(s) 50
TasI AATT 2 cut(s) 241, 251
TauI GCSGC 4 cut(s) 410, 505, 537, 1048
TfiI GAWTC 3 cut(s) 687, 742, 1096
Tru1I TTAA 1 cut(s) 611
Tru9I TTAA 1 cut(s) 611
TscAI CASTG 2 cut(s) 559, 717
TseFI GTSAC 1 cut(s) 62
TseI GCWGC 3 cut(s) 91, 848, 1040
Tsp45I GTSAC 1 cut(s) 62
TspDTI ATGAA 2 cut(s) 337, 1088
TspGWI ACGGA 4 cut(s) 127, 139, 364, 370
TspRI CASTG 2 cut(s) 559, 717
Tth111I GACNNNGTC 2 cut(s) 42, 56
VpaK11BI GGWCC 2 cut(s) 485, 564
XceI RCATGY 1 cut(s) 811
XspI CTAG 3 cut(s) 417, 530, 666
ZraI GACGTC 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.