Prupe.2G102400_v2.0.a1

F-box kelch-repeat protein SKIP25-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0011373
Physical Location & Seq
Forward (+)
15824747 .. 15826116
1370 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G102400.1

Sequence Viewer

Length: 1149 bp
ATGGATCAAGAAGCCATACCAAAACCAAAACACGAAAAACACAATCAAACTCAAGCCTCTTCCAATGAGACTTCGCTGTTGTCAGGCTTACCAAACCACCTTGCACAGCTCTGCCTTGCAAAAATCAACCCTTCCATTCTCTTCTCTGTTTGCCACTCATGGAGGCGCCTAATCTACTCTCCTTCCTTCACTCCTTTTTTCTCTCTCTACGCTCTTCTCTCTCCTCCACCTGATCACAGCCCCAATTCCCCCATTCAGTTCTCCTCACTAGACCCAATATCAAACACGTGGACATCTCTCCCTTCTCCTCCCTCCGACCCTCCTCTCCACCTCCTCCACCGCCACCCGGCCTTCCTCTCTCGAAAACTCCCCATCCAGACGTTGTCCGTCTCCGGCTGCCTTGTCCTCGTCGCCGCCACCACCCACCAATTCACACCCGCGCTGCCTCGTCCTCTTGTGTTCCAACCACTGTCCAAGCAGTGGTCCTTCGGCCCCGCGCTGCCCAAGCCGCGCCGTTTTTGTGCTGCCGGAACTGTGGGGGGCAAAGTGTATGTGGCGAGTGGGATGGGGACAACTTACAGAGGGGACGTTGCGAGGTCGATGGAAGAGTGGGACATGAAGGGGAAGGAGGTTTCTGCATCATGGGTTAAGAAGGCAGGGCTTAAAGATGGGAGGTTTAGCAGGGAGGCTGTGGAGGCAATTGGGTATAGAGGGAAGCTTTGGATGGTGAATGTGAAGGGCAATGCTATCAAGGAAGGGGCTGTTTATGATGTCGAAACGGACACGTGGCAAGACATGCCTCAAGGCATGCTTGGTGGATGGAATGGACCAACTGCTACATCCATCAATGATGATGATCATCATCATGACCATGATGCGATGTATGTGGTGGATGAGAGTAAAGGAGTGTTGAGCAAATATGTTGATGAAAATGATTGTTGGGAAGTGGTGATGGACTCGGTAGTGTTGAAAGAGGCTGAGCAAGTTTGTGCCGGGAGGGGGAGAGTTTGTGTGGTTTGTGCTAACGGGACTAGGATTGTGGTGGTGGATGTCGTGGCGCCGCTGCCAAGGATTTGGGTGGCGGAGCCGCCGCCGATGTTGGAAGTTGTGGCGGTACACATATTACCTAGGATGTGTAGGCTGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Kelch_6

Protein Analysis

383

Amino Acids

42.1

Weight (kDa)

6.92

Isoelectric Point (pI)

35.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011373)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31350 AT1G31350
fragaria_vesca FvH4_5g24190
malus_domestica MD06G1017400.v1.1 MD06G1017500.v1.1 MD07G1079500.v1.1
prunus_persica Prupe.2G102300_v2.0.a1 Prupe.2G102400_v2.0.a1 Prupe.5G018500_v2.0.a1
pyrus_communis pycom06g01420
rosa_chinensis RchiOBHm_Chr7g0213971
rosa_laevigata RLG00000002765
rosa_multiflora Rmu_sc0000328.1_g000002
rosa_roxburghii Rroxscaffold_3G00245610
rosa_rugosa Rorug07G0145100
rosa_samantha Rh7AG278400 Rh7BG271900 Rh7CG297400 Rh7DG283900
rosa_wichuraiana Rw7G023950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 165, 1057
AccB7I CCANNNNNTGG 1 cut(s) 480
AccII CGCG 3 cut(s) 440, 497, 511
AclWI GGATC 1 cut(s) 12
AcvI CACGTG 2 cut(s) 288, 786
AcyI GRCGYC 2 cut(s) 166, 1058
AfaI GTAC 1 cut(s) 1116
AfiI CCNNNNNNNGG 3 cut(s) 346, 480, 999
AflIII ACRYGT 2 cut(s) 285, 783
AgsI TTSAA 1 cut(s) 970
AluBI AGCT 2 cut(s) 109, 718
AluI AGCT 2 cut(s) 109, 718
Alw26I GTCTC 2 cut(s) 62, 394
AlwI GGATC 1 cut(s) 12
AoxI GGCC 2 cut(s) 348, 490
ApeKI GCWGC 5 cut(s) 396, 442, 499, 524, 1063
AspA2I CCTAGG 1 cut(s) 1127
AspLEI GCGC 5 cut(s) 168, 442, 499, 513, 1060
AspS9I GGNCC 3 cut(s) 483, 491, 827
AsuC2I CCSGG 2 cut(s) 347, 994
AsuHPI GGTGA 2 cut(s) 739, 961
AvaII GGWCC 2 cut(s) 483, 827
AvrII CCTAGG 1 cut(s) 1127
BanI GGYRCC 2 cut(s) 165, 1057
BbrPI CACGTG 2 cut(s) 288, 786
BbvI GCAGC 5 cut(s) 383, 429, 486, 511, 1050
BccI CCATC 8 cut(s) 380, 559, 595, 662, 718, 813, 851, 946
BceAI ACGGC 1 cut(s) 498
BclI TGATCA 2 cut(s) 232, 856
BcnI CCSGG 2 cut(s) 347, 994
BcoDI GTCTC 2 cut(s) 62, 394
BfaI CTAG 3 cut(s) 269, 1032, 1128
BfoI RGCGCY 2 cut(s) 169, 1061
BlnI CCTAGG 1 cut(s) 1127
BlpI GCTNAGC 1 cut(s) 978
Bme1390I CCNGG 2 cut(s) 347, 994
Bme18I GGWCC 2 cut(s) 483, 827
BmgT120I GGNCC 3 cut(s) 483, 491, 827
BmiI GGNNCC 4 cut(s) 167, 493, 1059, 1086
BmrFI CCNGG 2 cut(s) 347, 994
BmsI GCATC 2 cut(s) 647, 865
Bpu1102I GCTNAGC 1 cut(s) 978
BpuEI CTTGAG 2 cut(s) 36, 786
BpuMI CCSGG 2 cut(s) 347, 994
BsaAI YACGTR 2 cut(s) 288, 786
BsaBI GATNNNNATC 3 cut(s) 855, 858, 861
BsaHI GRCGYC 2 cut(s) 166, 1058
BsaJI CCNNGG 2 cut(s) 1067, 1127
BsaXI ACNNNNNCTCC 2 cut(s) 994, 1024
Bsc4I CCNNNNNNNGG 3 cut(s) 346, 480, 999
Bse3DI GCAATG 1 cut(s) 748
Bse8I GATNNNNATC 3 cut(s) 855, 858, 861
BseDI CCNNGG 2 cut(s) 1067, 1127
BseGI GGATG 8 cut(s) 372, 570, 729, 824, 839, 898, 1054, 1137
BseJI GATNNNNATC 3 cut(s) 855, 858, 861
BseLI CCNNNNNNNGG 3 cut(s) 346, 480, 999
BseMI GCAATG 1 cut(s) 748
BseMII CTCAG 1 cut(s) 969
BseRI GAGGAG 5 cut(s) 213, 253, 297, 312, 323
BseXI GCAGC 5 cut(s) 383, 429, 486, 511, 1050
Bsh1236I CGCG 3 cut(s) 440, 497, 511
BshFI GGCC 2 cut(s) 350, 492
BshNI GGYRCC 2 cut(s) 165, 1057
BsiSI CCGG 4 cut(s) 347, 393, 528, 993
BslFI GGGAC 4 cut(s) 583, 599, 626, 1042
BslI CCNNNNNNNGG 3 cut(s) 346, 480, 999
BsmAI GTCTC 2 cut(s) 62, 394
BsmBI CGTCTC 1 cut(s) 394
BsmFI GGGAC 4 cut(s) 583, 599, 626, 1042
BsnI GGCC 2 cut(s) 350, 492
Bsp143I GATC 3 cut(s) 4, 232, 856
Bsp1720I GCTNAGC 1 cut(s) 978
BspANI GGCC 2 cut(s) 350, 492
BspCNI CTCAG 1 cut(s) 970
BspFNI CGCG 3 cut(s) 440, 497, 511
BspHI TCATGA 1 cut(s) 865
BspLI GGNNCC 4 cut(s) 167, 493, 1059, 1086
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 219
BspT107I GGYRCC 2 cut(s) 165, 1057
BsrDI GCAATG 1 cut(s) 748
BssECI CCNNGG 2 cut(s) 1067, 1127
BssMI GATC 3 cut(s) 4, 232, 856
BssNI GRCGYC 2 cut(s) 166, 1058
BssT1I CCWWGG 2 cut(s) 1067, 1127
Bst4CI ACNGT 2 cut(s) 471, 535
Bst6I CTCTTC 4 cut(s) 64, 146, 219, 600
BstACI GRCGYC 2 cut(s) 166, 1058
BstAPI GCANNNNNTGC 1 cut(s) 796
BstBAI YACGTR 2 cut(s) 288, 786
BstC8I GCNNGC 1 cut(s) 809
BstDEI CTNAG 1 cut(s) 978
BstF5I GGATG 8 cut(s) 372, 570, 729, 824, 839, 898, 1054, 1137
BstFNI CGCG 3 cut(s) 440, 497, 511
BstH2I RGCGCY 2 cut(s) 169, 1061
BstHHI GCGC 5 cut(s) 168, 442, 499, 513, 1060
BstKTI GATC 3 cut(s) 7, 235, 859
BstMAI GTCTC 2 cut(s) 62, 394
BstMBI GATC 3 cut(s) 4, 232, 856
BstMWI GCNNNNNNNGC 4 cut(s) 505, 508, 695, 796
BstNSI RCATGY 2 cut(s) 799, 811
BstSCI CCNGG 2 cut(s) 345, 992
BstUI CGCG 3 cut(s) 440, 497, 511
BstV1I GCAGC 5 cut(s) 383, 429, 486, 511, 1050
BstXI CCANNNNNNTGG 1 cut(s) 1074
BsuRI GGCC 2 cut(s) 350, 492
BtgZI GCGATG 1 cut(s) 893
BtsCI GGATG 8 cut(s) 372, 570, 729, 824, 839, 898, 1054, 1137
BtsI GCAGTG 1 cut(s) 485
BtsIMutI CAGTG 2 cut(s) 467, 485
Cac8I GCNNGC 1 cut(s) 809
CciI TCATGA 1 cut(s) 865
CfoI GCGC 5 cut(s) 168, 442, 499, 513, 1060
Cfr13I GGNCC 3 cut(s) 483, 491, 827
Csp6I GTAC 1 cut(s) 1115
CviAII CATG 7 cut(s) 159, 616, 642, 796, 808, 866, 872
CviQI GTAC 1 cut(s) 1115
DdeI CTNAG 1 cut(s) 978
DinI GGCGCC 2 cut(s) 167, 1059
DpnI GATC 3 cut(s) 6, 234, 858
DpnII GATC 3 cut(s) 4, 232, 856
Eam1104I CTCTTC 4 cut(s) 64, 146, 219, 600
EarI CTCTTC 4 cut(s) 64, 146, 219, 600
EciI GGCGGA 1 cut(s) 1097
Eco130I CCWWGG 2 cut(s) 1067, 1127
Eco47I GGWCC 2 cut(s) 483, 827
Eco72I CACGTG 2 cut(s) 288, 786
EcoT14I CCWWGG 2 cut(s) 1067, 1127
EgeI GGCGCC 2 cut(s) 167, 1059
EheI GGCGCC 2 cut(s) 167, 1059
ErhI CCWWGG 2 cut(s) 1067, 1127
Esp3I CGTCTC 1 cut(s) 394
FaeI CATG 7 cut(s) 162, 619, 645, 799, 811, 869, 875
FalI AAGNNNNNCTT 2 cut(s) 795, 827
FaqI GGGAC 4 cut(s) 583, 599, 626, 1042
FatI CATG 7 cut(s) 158, 615, 641, 795, 807, 865, 871
FauI CCCGC 2 cut(s) 445, 502
FbaI TGATCA 2 cut(s) 232, 856
FokI GGATG 8 cut(s) 359, 577, 736, 826, 831, 905, 1061, 1144
FspBI CTAG 3 cut(s) 269, 1032, 1128
GlaI GCGC 5 cut(s) 167, 441, 498, 512, 1059
HaeII RGCGCY 2 cut(s) 169, 1061
HaeIII GGCC 2 cut(s) 350, 492
HapII CCGG 4 cut(s) 347, 393, 528, 993
HhaI GCGC 5 cut(s) 168, 442, 499, 513, 1060
Hin1I GRCGYC 2 cut(s) 166, 1058
Hin1II CATG 7 cut(s) 162, 619, 645, 799, 811, 869, 875
Hin6I GCGC 5 cut(s) 166, 440, 497, 511, 1058
HinP1I GCGC 5 cut(s) 166, 440, 497, 511, 1058
HindIII AAGCTT 1 cut(s) 716
HinfI GANTC 1 cut(s) 956
HpaII CCGG 4 cut(s) 347, 393, 528, 993
HphI GGTGA 2 cut(s) 739, 961
Hpy166II GTNNAC 2 cut(s) 291, 1117
Hpy188I TCNGA 1 cut(s) 316
Hpy188III TCNNGA 4 cut(s) 8, 360, 376, 866
Hpy8I GTNNAC 2 cut(s) 291, 1117
Hpy99I CGWCG 1 cut(s) 413
HpyCH4III ACNGT 2 cut(s) 471, 535
HpyCH4IV ACGT 4 cut(s) 287, 380, 588, 785
HpyCH4V TGCA 3 cut(s) 104, 119, 638
HpyF10VI GCNNNNNNNGC 4 cut(s) 505, 508, 695, 796
HpyF3I CTNAG 1 cut(s) 978
HpySE526I ACGT 4 cut(s) 287, 380, 588, 785
Hsp92I GRCGYC 2 cut(s) 166, 1058
Hsp92II CATG 7 cut(s) 162, 619, 645, 799, 811, 869, 875
HspAI GCGC 5 cut(s) 166, 440, 497, 511, 1058
KasI GGCGCC 2 cut(s) 165, 1057
Ksp22I TGATCA 2 cut(s) 232, 856
Kzo9I GATC 3 cut(s) 4, 232, 856
LguI GCTCTTC 1 cut(s) 219
LmnI GCTCC 1 cut(s) 1084
Lsp1109I GCAGC 5 cut(s) 383, 429, 486, 511, 1050
LweI GCATC 2 cut(s) 647, 865
MaeI CTAG 3 cut(s) 269, 1032, 1128
MaeII ACGT 4 cut(s) 287, 380, 588, 785
MalI GATC 3 cut(s) 6, 234, 858
MboI GATC 3 cut(s) 4, 232, 856
MboII GAAGA 4 cut(s) 51, 133, 206, 617
MfeI CAATTG 1 cut(s) 699
MluCI AATT 3 cut(s) 244, 428, 699
Mly113I GGCGCC 2 cut(s) 166, 1058
MlyI GAGTC 1 cut(s) 950
MmeI TCCRAC 3 cut(s) 339, 487, 1080
MseI TTAA 3 cut(s) 648, 663, 1147
MslI CAYNNNNRTG 2 cut(s) 864, 870
MspA1I CMGCKG 1 cut(s) 1063
MspI CCGG 4 cut(s) 347, 393, 528, 993
MspR9I CCNGG 2 cut(s) 347, 994
MunI CAATTG 1 cut(s) 699
MvnI CGCG 3 cut(s) 440, 497, 511
MwoI GCNNNNNNNGC 4 cut(s) 505, 508, 695, 796
NarI GGCGCC 2 cut(s) 166, 1058
NciI CCSGG 2 cut(s) 347, 994
NdeII GATC 3 cut(s) 4, 232, 856
NlaIII CATG 7 cut(s) 162, 619, 645, 799, 811, 869, 875
NlaIV GGNNCC 4 cut(s) 167, 493, 1059, 1086
NspI RCATGY 2 cut(s) 799, 811
PaeI GCATGC 1 cut(s) 811
PagI TCATGA 1 cut(s) 865
PciSI GCTCTTC 1 cut(s) 219
PflFI GACNNNGTC 1 cut(s) 382
PflMI CCANNNNNTGG 1 cut(s) 480
PleI GAGTC 1 cut(s) 950
PluTI GGCGCC 2 cut(s) 169, 1061
PmaCI CACGTG 2 cut(s) 288, 786
PmlI CACGTG 2 cut(s) 288, 786
PpsI GAGTC 1 cut(s) 950
Ppu21I YACGTR 2 cut(s) 288, 786
PspCI CACGTG 2 cut(s) 288, 786
PspN4I GGNNCC 4 cut(s) 167, 493, 1059, 1086
PspPI GGNCC 3 cut(s) 483, 491, 827
PsyI GACNNNGTC 1 cut(s) 382
RsaI GTAC 1 cut(s) 1116
RsaNI GTAC 1 cut(s) 1115
RseI CAYNNNNRTG 2 cut(s) 864, 870
SapI GCTCTTC 1 cut(s) 219
SaqAI TTAA 3 cut(s) 648, 663, 1147
Sau3AI GATC 3 cut(s) 4, 232, 856
Sau96I GGNCC 3 cut(s) 483, 491, 827
SchI GAGTC 1 cut(s) 950
ScrFI CCNGG 2 cut(s) 347, 994
SfaNI GCATC 2 cut(s) 647, 865
SfoI GGCGCC 2 cut(s) 167, 1059
SinI GGWCC 2 cut(s) 483, 827
SmiMI CAYNNNNRTG 2 cut(s) 864, 870
SmlI CTYRAG 2 cut(s) 51, 801
SmoI CTYRAG 2 cut(s) 51, 801
SphI GCATGC 1 cut(s) 811
Sse9I AATT 3 cut(s) 244, 428, 699
SspDI GGCGCC 2 cut(s) 165, 1057
SspMI CTAG 3 cut(s) 269, 1032, 1128
StyD4I CCNGG 2 cut(s) 345, 992
StyI CCWWGG 2 cut(s) 1067, 1127
TaaI ACNGT 2 cut(s) 471, 535
TaiI ACGT 4 cut(s) 290, 383, 591, 788
TaqI TCGA 3 cut(s) 361, 599, 774
TasI AATT 3 cut(s) 244, 428, 699
TauI GCSGC 5 cut(s) 416, 511, 1063, 1090, 1093
Tru1I TTAA 3 cut(s) 648, 663, 1147
Tru9I TTAA 3 cut(s) 648, 663, 1147
TscAI CASTG 2 cut(s) 474, 485
TseI GCWGC 5 cut(s) 396, 442, 499, 524, 1063
TspDTI ATGAA 2 cut(s) 632, 942
TspGWI ACGGA 2 cut(s) 376, 794
TspRI CASTG 2 cut(s) 474, 485
Tth111I GACNNNGTC 1 cut(s) 382
Van91I CCANNNNNTGG 1 cut(s) 480
VpaK11BI GGWCC 2 cut(s) 483, 827
XceI RCATGY 2 cut(s) 799, 811
XmaJI CCTAGG 1 cut(s) 1127
XspI CTAG 3 cut(s) 269, 1032, 1128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.