AT1G31760

Upstream activation factor subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011758
Physical Location & Seq
Reverse (-)
11372394 .. 11374301
1908 bp
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UTR
Exon/CDS
Intron
AT1G31760.1

Sequence Viewer

Length: 339 bp
ATGGCGGGAATTTCTAGGGTTTTGGGAGGGTTCAGGACACTGATGTCGAAGGCGGCGACTGTTGAGGCCGTTACTGTAGCCGGAGAAGGAAAAGGGATATTCAAGACTCGTCCGGTGTCACAGCAGCTAGCTAGCTTCGCCGGAGAAAGGGAACTCACTCGTGGTTCCGCTCTGAAGAAAGTTTGGGAGTATGTGAAGCTTCACAATCTCCAGAATCCGGCGAACAAGAAGGAGATTCACTGCGATGATAAGTTGAAGACGATTTTCGATGGCAAAGACAAAGTCGGAATCACAGAGATCATGAAGCTCCTCTCACCACATTTCCCTAAATCCGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SWIB

Protein Analysis

112

Amino Acids

12.3

Weight (kDa)

9.84

Isoelectric Point (pI)

30.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIB PF02201 36 - 108 3.6e-29 SWIB/MDM2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011758)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31760 AT2G35605 AT3G03590 AT3G48600 AT3G48600
fragaria_vesca FvH4_7g08300 FvH4_7g08300
malus_domestica MD02G1231800.v1.1 MD07G1081700.v1.1
prunus_persica Prupe.2G106900_v2.0.a1
pyrus_communis pycom02g20020 pycom07g06500
rosa_chinensis RchiOBHm_Chr1g0340731
rosa_laevigata RLG00000029041
rosa_multiflora Rmu_sc0001211.1_g000138
rosa_roxburghii Rroxscaffold_4G00311370
rosa_samantha Rh1BG144800 Rh1DG176500
rosa_wichuraiana Rw1G014750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 43
AccBSI CCGCTC 1 cut(s) 170
AciI CCGC 3 cut(s) 5, 53, 168
AcsI RAATTY 1 cut(s) 9
AcuI CTGAAG 1 cut(s) 194
AfiI CCNNNNNNNGG 2 cut(s) 147, 217
AgsI TTSAA 2 cut(s) 103, 256
AluBI AGCT 5 cut(s) 127, 131, 135, 199, 307
AluI AGCT 5 cut(s) 127, 131, 135, 199, 307
AoxI GGCC 1 cut(s) 66
ApeKI GCWGC 1 cut(s) 124
ApoI RAATTY 1 cut(s) 9
ArsI GACNNNNNNTTYG 2 cut(s) 267, 299
AsuHPI GGTGA 1 cut(s) 306
AsuNHI GCTAGC 2 cut(s) 127, 131
BauI CACGAG 1 cut(s) 159
BbsI GAAGAC 1 cut(s) 263
BbvI GCAGC 1 cut(s) 136
BccI CCATC 1 cut(s) 263
BceAI ACGGC 1 cut(s) 53
BfaI CTAG 3 cut(s) 15, 128, 132
BfmI CTRYAG 1 cut(s) 75
BisI GCNGC 2 cut(s) 54, 125
BlsI GCNGC 2 cut(s) 55, 126
BmiI GGNNCC 1 cut(s) 166
BmtI GCTAGC 2 cut(s) 131, 135
BpiI GAAGAC 1 cut(s) 263
BpmI CTGGAG 1 cut(s) 194
BsaWI WCCGGW 1 cut(s) 112
Bsc4I CCNNNNNNNGG 2 cut(s) 147, 217
BseLI CCNNNNNNNGG 2 cut(s) 147, 217
BseRI GAGGAG 1 cut(s) 299
BseXI GCAGC 1 cut(s) 136
BshFI GGCC 1 cut(s) 68
BsiSI CCGG 4 cut(s) 81, 113, 141, 218
BslI CCNNNNNNNGG 2 cut(s) 147, 217
BsnI GGCC 1 cut(s) 68
Bsp143I GATC 1 cut(s) 297
BspACI CCGC 3 cut(s) 5, 53, 168
BspANI GGCC 1 cut(s) 68
BspHI TCATGA 1 cut(s) 300
BspLI GGNNCC 1 cut(s) 166
BspOI GCTAGC 2 cut(s) 131, 135
BsrBI CCGCTC 1 cut(s) 170
BssMI GATC 1 cut(s) 297
BssSI CACGAG 1 cut(s) 159
Bst2BI CACGAG 1 cut(s) 159
Bst4CI ACNGT 2 cut(s) 61, 76
BstC8I GCNNGC 2 cut(s) 129, 133
BstKTI GATC 1 cut(s) 300
BstMBI GATC 1 cut(s) 297
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstSFI CTRYAG 1 cut(s) 75
BstV1I GCAGC 1 cut(s) 136
BstV2I GAAGAC 1 cut(s) 263
BsuRI GGCC 1 cut(s) 68
BtgZI GCGATG 1 cut(s) 258
BtsI GCAGTG 1 cut(s) 238
BtsIMutI CAGTG 2 cut(s) 38, 238
Cac8I GCNNGC 2 cut(s) 129, 133
CciI TCATGA 1 cut(s) 300
CviAII CATG 1 cut(s) 301
CviJI RGCY 7 cut(s) 68, 80, 127, 131, 135, 199, 307
CviKI_1 RGCY 7 cut(s) 68, 80, 127, 131, 135, 199, 307
DpnI GATC 1 cut(s) 299
DpnII GATC 1 cut(s) 297
DrdI GACNNNNNNGTC 1 cut(s) 43
DseDI GACNNNNNNGTC 1 cut(s) 43
Eco57I CTGAAG 1 cut(s) 194
FaeI CATG 1 cut(s) 304
FaiI YATR 2 cut(s) 192, 302
FatI CATG 1 cut(s) 300
Fnu4HI GCNGC 2 cut(s) 54, 125
Fsp4HI GCNGC 2 cut(s) 54, 125
FspBI CTAG 3 cut(s) 15, 128, 132
GluI GCNGC 2 cut(s) 54, 125
GsuI CTGGAG 1 cut(s) 194
HaeIII GGCC 1 cut(s) 68
HapII CCGG 4 cut(s) 81, 113, 141, 218
Hin1II CATG 1 cut(s) 304
HindIII AAGCTT 1 cut(s) 197
HinfI GANTC 4 cut(s) 106, 214, 235, 288
HpaII CCGG 4 cut(s) 81, 113, 141, 218
HphI GGTGA 1 cut(s) 306
Hpy188I TCNGA 3 cut(s) 174, 287, 338
Hpy188III TCNNGA 4 cut(s) 34, 103, 211, 301
HpyAV CCTTC 3 cut(s) 43, 80, 223
HpyCH4III ACNGT 2 cut(s) 61, 76
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
Hsp92II CATG 1 cut(s) 304
Kzo9I GATC 1 cut(s) 297
LmnI GCTCC 1 cut(s) 312
LpnPI CCDG 6 cut(s) 19, 94, 126, 154, 224, 231
Lsp1109I GCAGC 1 cut(s) 136
MaeI CTAG 3 cut(s) 15, 128, 132
MaeIII GTNAC 2 cut(s) 70, 117
MalI GATC 1 cut(s) 299
MbiI CCGCTC 1 cut(s) 170
MboI GATC 1 cut(s) 297
MboII GAAGA 2 cut(s) 187, 268
MluCI AATT 1 cut(s) 9
MlyI GAGTC 1 cut(s) 100
MmeI TCCRAC 1 cut(s) 265
MnlI CCTC 3 cut(s) 20, 58, 320
MslI CAYNNNNRTG 1 cut(s) 243
MspI CCGG 4 cut(s) 81, 113, 141, 218
MwoI GCNNNNNNNGC 1 cut(s) 137
NdeII GATC 1 cut(s) 297
NheI GCTAGC 2 cut(s) 127, 131
NlaIII CATG 1 cut(s) 304
NlaIV GGNNCC 1 cut(s) 166
NmuCI GTSAC 1 cut(s) 117
PagI TCATGA 1 cut(s) 300
PcsI WCGNNNNNNNCGW 1 cut(s) 53
PfeI GAWTC 3 cut(s) 214, 235, 288
PflFI GACNNNGTC 1 cut(s) 281
PkrI GCNGC 2 cut(s) 55, 126
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
PspN4I GGNNCC 1 cut(s) 166
PsyI GACNNNGTC 1 cut(s) 281
RseI CAYNNNNRTG 1 cut(s) 243
SatI GCNGC 2 cut(s) 54, 125
Sau3AI GATC 1 cut(s) 297
SchI GAGTC 1 cut(s) 100
SetI ASST 5 cut(s) 129, 133, 137, 201, 309
SfcI CTRYAG 1 cut(s) 75
SmiMI CAYNNNNRTG 1 cut(s) 243
Sse9I AATT 1 cut(s) 9
SsiI CCGC 3 cut(s) 5, 53, 168
SspMI CTAG 3 cut(s) 15, 128, 132
TaaI ACNGT 2 cut(s) 61, 76
TaqI TCGA 2 cut(s) 47, 267
TasI AATT 1 cut(s) 9
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 3 cut(s) 214, 235, 288
TscAI CASTG 2 cut(s) 45, 245
TseFI GTSAC 1 cut(s) 117
TseI GCWGC 1 cut(s) 124
Tsp45I GTSAC 1 cut(s) 117
TspDTI ATGAA 1 cut(s) 317
TspGWI ACGGA 1 cut(s) 322
TspRI CASTG 2 cut(s) 45, 245
Tth111I GACNNNGTC 1 cut(s) 281
XapI RAATTY 1 cut(s) 9
XspI CTAG 3 cut(s) 15, 128, 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.