AT2G35605

SWI complex, BAF60b domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011758
Physical Location & Seq
Forward (+)
14946041 .. 14947276
1236 bp
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UTR
Exon/CDS
Intron
AT2G35605.1

Sequence Viewer

Length: 330 bp
ATGTCGAGGGTTTTCGGAGCTTGCAGGGTACTGATGGCGAAGGCCGCTTCTTCCACCGGCGCTAAAACTGGTAGACAAGGTACTGGCATTCTTAAGGTGGTTCCCGTTTCGAAGCCGCTCGCTAATTTTATTGGGGAAAACGAAGTCTCTCGCACAACTGCCGTCAAGAAAATCTGGGAATATATCAAGCTTAACAATCTTCAGAATCCGGTGAACAAAAGGGAGATACTATGCGATGAGCAACTCAAGACGATCTTCAGTGGGAAAGACACTGTCGGGTTCCTCGAGATTTCAAAACTTCTGTCTCAACATTTTCCTAAGTCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SWIB

Protein Analysis

109

Amino Acids

11.95

Weight (kDa)

9.95

Isoelectric Point (pI)

35.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIB PF02201 33 - 105 1.1e-31 SWIB/MDM2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011758)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31760 AT2G35605 AT3G03590 AT3G48600 AT3G48600
fragaria_vesca FvH4_7g08300 FvH4_7g08300
malus_domestica MD02G1231800.v1.1 MD07G1081700.v1.1
prunus_persica Prupe.2G106900_v2.0.a1
pyrus_communis pycom02g20020 pycom07g06500
rosa_chinensis RchiOBHm_Chr1g0340731
rosa_laevigata RLG00000029041
rosa_multiflora Rmu_sc0001211.1_g000138
rosa_roxburghii Rroxscaffold_4G00311370
rosa_samantha Rh1BG144800 Rh1DG176500
rosa_wichuraiana Rw1G014750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 118
AccI GTMKAC 1 cut(s) 73
AciI CCGC 2 cut(s) 45, 116
AcuI CTGAAG 2 cut(s) 185, 241
AfaI GTAC 2 cut(s) 30, 82
AflII CTTAAG 1 cut(s) 92
AgsI TTSAA 1 cut(s) 294
AluBI AGCT 2 cut(s) 20, 190
AluI AGCT 2 cut(s) 20, 190
Alw26I GTCTC 2 cut(s) 151, 309
Ama87I CYCGRG 1 cut(s) 284
AoxI GGCC 1 cut(s) 42
ArsI GACNNNNNNTTYG 2 cut(s) 287, 319
AspLEI GCGC 1 cut(s) 62
AsuHPI GGTGA 1 cut(s) 223
AsuII TTCGAA 1 cut(s) 110
AvaI CYCGRG 1 cut(s) 284
BccI CCATC 1 cut(s) 28
BceAI ACGGC 1 cut(s) 146
BcoDI GTCTC 2 cut(s) 151, 309
BfoI RGCGCY 1 cut(s) 63
BfrI CTTAAG 1 cut(s) 92
BisI GCNGC 2 cut(s) 45, 116
BlsI GCNGC 2 cut(s) 46, 117
BmeT110I CYCGRG 1 cut(s) 284
BmiI GGNNCC 2 cut(s) 102, 281
Bpu14I TTCGAA 1 cut(s) 110
BpuEI CTTGAG 1 cut(s) 230
BsaWI WCCGGW 1 cut(s) 208
Bse118I RCCGGY 1 cut(s) 56
Bse1I ACTGG 2 cut(s) 73, 88
BseNI ACTGG 2 cut(s) 73, 88
BshFI GGCC 1 cut(s) 44
BsiHKCI CYCGRG 1 cut(s) 284
BsiSI CCGG 2 cut(s) 57, 209
BsmAI GTCTC 2 cut(s) 151, 309
BsmI GAATGC 1 cut(s) 87
BsnI GGCC 1 cut(s) 44
BsoBI CYCGRG 1 cut(s) 284
Bsp119I TTCGAA 1 cut(s) 110
Bsp143I GATC 1 cut(s) 252
BspACI CCGC 2 cut(s) 45, 116
BspANI GGCC 1 cut(s) 44
BspLI GGNNCC 2 cut(s) 102, 281
BspT104I TTCGAA 1 cut(s) 110
BspTI CTTAAG 1 cut(s) 92
BsrBI CCGCTC 1 cut(s) 118
BsrFI RCCGGY 1 cut(s) 56
BsrI ACTGG 2 cut(s) 73, 88
BssAI RCCGGY 1 cut(s) 56
BssMI GATC 1 cut(s) 252
Bst4CI ACNGT 1 cut(s) 274
BstAFI CTTAAG 1 cut(s) 92
BstBI TTCGAA 1 cut(s) 110
BstC8I GCNNGC 2 cut(s) 22, 120
BstDEI CTNAG 1 cut(s) 318
BstH2I RGCGCY 1 cut(s) 63
BstHHI GCGC 1 cut(s) 62
BstKTI GATC 1 cut(s) 255
BstMAI GTCTC 2 cut(s) 151, 309
BstMBI GATC 1 cut(s) 252
BstMWI GCNNNNNNNGC 1 cut(s) 44
BsuRI GGCC 1 cut(s) 44
BtgZI GCGATG 1 cut(s) 249
BtsIMutI CAGTG 2 cut(s) 265, 270
Cac8I GCNNGC 2 cut(s) 22, 120
CfoI GCGC 1 cut(s) 62
Cfr10I RCCGGY 1 cut(s) 56
Csp6I GTAC 2 cut(s) 29, 81
CviJI RGCY 4 cut(s) 20, 44, 115, 190
CviKI_1 RGCY 4 cut(s) 20, 44, 115, 190
CviQI GTAC 2 cut(s) 29, 81
DdeI CTNAG 1 cut(s) 318
DpnI GATC 1 cut(s) 254
DpnII GATC 1 cut(s) 252
Eco57I CTGAAG 2 cut(s) 185, 241
Eco88I CYCGRG 1 cut(s) 284
FaiI YATR 2 cut(s) 183, 232
FalI AAGNNNNNCTT 2 cut(s) 239, 271
FblI GTMKAC 1 cut(s) 73
Fnu4HI GCNGC 2 cut(s) 45, 116
Fsp4HI GCNGC 2 cut(s) 45, 116
GlaI GCGC 1 cut(s) 61
GluI GCNGC 2 cut(s) 45, 116
HaeII RGCGCY 1 cut(s) 63
HaeIII GGCC 1 cut(s) 44
HapII CCGG 2 cut(s) 57, 209
HhaI GCGC 1 cut(s) 62
Hin6I GCGC 1 cut(s) 60
HinP1I GCGC 1 cut(s) 60
HindIII AAGCTT 1 cut(s) 188
HinfI GANTC 1 cut(s) 205
HpaII CCGG 2 cut(s) 57, 209
HphI GGTGA 1 cut(s) 223
Hpy166II GTNNAC 2 cut(s) 74, 214
Hpy188I TCNGA 2 cut(s) 17, 204
Hpy188III TCNNGA 3 cut(s) 166, 247, 286
Hpy8I GTNNAC 2 cut(s) 74, 214
HpyAV CCTTC 1 cut(s) 34
HpyCH4III ACNGT 1 cut(s) 274
HpyCH4V TGCA 1 cut(s) 24
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
HpyF3I CTNAG 1 cut(s) 318
HspAI GCGC 1 cut(s) 60
Kzo9I GATC 1 cut(s) 252
LmnI GCTCC 1 cut(s) 17
LpnPI CCDG 6 cut(s) 10, 54, 69, 70, 160, 222
MalI GATC 1 cut(s) 254
MbiI CCGCTC 1 cut(s) 118
MboI GATC 1 cut(s) 252
MboII GAAGA 3 cut(s) 42, 191, 247
MluCI AATT 1 cut(s) 124
MnlI CCTC 1 cut(s) 293
MseI TTAA 2 cut(s) 93, 192
MspCI CTTAAG 1 cut(s) 92
MspI CCGG 2 cut(s) 57, 209
Mva1269I GAATGC 1 cut(s) 87
MwoI GCNNNNNNNGC 1 cut(s) 44
NdeII GATC 1 cut(s) 252
NlaIV GGNNCC 2 cut(s) 102, 281
NspV TTCGAA 1 cut(s) 110
PaeR7I CTCGAG 1 cut(s) 284
PcsI WCGNNNNNNNCGW 1 cut(s) 282
PctI GAATGC 1 cut(s) 87
PfeI GAWTC 1 cut(s) 205
PflFI GACNNNGTC 1 cut(s) 272
PkrI GCNGC 2 cut(s) 46, 117
PspN4I GGNNCC 2 cut(s) 102, 281
PsyI GACNNNGTC 1 cut(s) 272
RsaI GTAC 2 cut(s) 30, 82
RsaNI GTAC 2 cut(s) 29, 81
SaqAI TTAA 2 cut(s) 93, 192
SatI GCNGC 2 cut(s) 45, 116
Sau3AI GATC 1 cut(s) 252
SetI ASST 4 cut(s) 22, 82, 99, 192
Sfr274I CTCGAG 1 cut(s) 284
SfuI TTCGAA 1 cut(s) 110
SgrAI CRCCGGYG 1 cut(s) 56
SlaI CTCGAG 1 cut(s) 284
SmlI CTYRAG 3 cut(s) 92, 245, 284
SmoI CTYRAG 3 cut(s) 92, 245, 284
Sse9I AATT 1 cut(s) 124
SsiI CCGC 2 cut(s) 45, 116
TaaI ACNGT 1 cut(s) 274
TaqI TCGA 3 cut(s) 5, 110, 285
TasI AATT 1 cut(s) 124
TauI GCSGC 2 cut(s) 47, 118
TfiI GAWTC 1 cut(s) 205
Tru1I TTAA 2 cut(s) 93, 192
Tru9I TTAA 2 cut(s) 93, 192
TscAI CASTG 2 cut(s) 265, 277
TspRI CASTG 2 cut(s) 265, 277
Tth111I GACNNNGTC 1 cut(s) 272
Vha464I CTTAAG 1 cut(s) 92
XhoI CTCGAG 1 cut(s) 284
XmiI GTMKAC 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.