Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0011758

Physical Location & Seq

Genomic Coordinates Reverse (-)

5809726 .. 5811869

Gene Structure 2144 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g06500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGCGTCTTCGAGTTTGATTAGGGTTTCCAGGGCTATCATGGCGGCGATCAGATCCTCCAGTTCCACTGGCGGAGCTGCTCTCTTTTCCTCGAAGGCCGCCACCAGTGCTGTTCCGAAGTCAAAGGCGAAGGCTAAGCCCAAGGAAGCAGGTGATTCGACCAAGCCCAAAGCCACCCTCGGGATATTGAAGCCGACTCCGATCTCTCCAGCTCTGGGTAGCTTCCTCGGCGTCAAGGAGTCCTCCCGCGCCGAAGCTGTCAAGCAGATCTGGGCCCACATCAAGCTCCACAATCTGCAGAATCCTGCCAACAAGAGGGAGATTTACTGTGATGACAAGCTAAAGGGGATTTTTGAAGGGAGAGAAAAAGTGGGCTTTCTGGAAATTGGGAAGCTGCTTTCGCGCCACTTTGTGAAGGCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SWIB

Protein Analysis

142

Amino Acids

15.02

Weight (kDa)

10.23

Isoelectric Point (pI)

45.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31760 AT2G35605 AT3G03590 AT3G48600 AT3G48600
fragaria_vesca	FvH4_7g08300 FvH4_7g08300
malus_domestica	MD02G1231800.v1.1 MD07G1081700.v1.1
prunus_persica	Prupe.2G106900_v2.0.a1
pyrus_communis	pycom02g20020 pycom07g06500
rosa_chinensis	RchiOBHm_Chr1g0340731
rosa_laevigata	RLG00000029041
rosa_multiflora	Rmu_sc0001211.1_g000138
rosa_roxburghii	Rroxscaffold_4G00311370
rosa_samantha	Rh1BG144800 Rh1DG176500
rosa_wichuraiana	Rw1G014750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	140
Acc36I	ACCTGC	1 cut(s)	140
AccII	CGCG	2 cut(s)	249, 403
AciI	CCGC	4 cut(s)	44, 72, 99, 247
AclWI	GGATC	1 cut(s)	48
AcyI	GRCGYC	2 cut(s)	5, 231
AdeI	CACNNNGTG	1 cut(s)	412
AfiI	CCNNNNNNNGG	3 cut(s)	180, 215, 315
AgsI	TTSAA	2 cut(s)	190, 356
AjnI	CCWGG	1 cut(s)	29
AluBI	AGCT	7 cut(s)	77, 212, 222, 257, 286, 340, 394
AluI	AGCT	7 cut(s)	77, 212, 222, 257, 286, 340, 394
AlwI	GGATC	1 cut(s)	48
Ama87I	CYCGRG	1 cut(s)	179
AoxI	GGCC	2 cut(s)	96, 273
ApaI	GGGCCC	1 cut(s)	277
ApeKI	GCWGC	2 cut(s)	77, 394
AspLEI	GCGC	2 cut(s)	251, 405
AspS9I	GGNCC	2 cut(s)	273, 274
AsuHPI	GGTGA	1 cut(s)	164
AvaI	CYCGRG	1 cut(s)	179
BaeGI	GKGCMC	1 cut(s)	277
BanII	GRGCYC	1 cut(s)	277
BbvI	GCAGC	2 cut(s)	64, 381
BcgI	CGANNNNNNTGC	2 cut(s)	138, 172
BciT130I	CCWGG	1 cut(s)	31
BfmI	CTRYAG	1 cut(s)	296
BfuAI	ACCTGC	1 cut(s)	140
BglII	AGATCT	1 cut(s)	267
BisI	GCNGC	4 cut(s)	45, 78, 99, 395
BlpI	GCTNAGC	1 cut(s)	135
BlsI	GCNGC	4 cut(s)	46, 79, 100, 396
Bme1390I	CCNGG	1 cut(s)	31
BmeT110I	CYCGRG	1 cut(s)	179
BmgT120I	GGNCC	2 cut(s)	273, 274
BmiI	GGNNCC	1 cut(s)	275
BmrFI	CCNGG	1 cut(s)	31
BplI	GAGNNNNNCTC	2 cut(s)	66, 98
BpmI	CTGGAG	2 cut(s)	43, 192
Bpu1102I	GCTNAGC	1 cut(s)	135
BsaHI	GRCGYC	2 cut(s)	5, 231
BsaJI	CCNNGG	4 cut(s)	30, 141, 178, 226
Bsc4I	CCNNNNNNNGG	3 cut(s)	180, 215, 315
Bse1I	ACTGG	3 cut(s)	60, 73, 105
BseBI	CCWGG	1 cut(s)	31
BseDI	CCNNGG	4 cut(s)	30, 141, 178, 226
BseLI	CCNNNNNNNGG	3 cut(s)	180, 215, 315
BseNI	ACTGG	3 cut(s)	60, 73, 105
BseSI	GKGCMC	1 cut(s)	277
BseXI	GCAGC	2 cut(s)	64, 381
Bsh1236I	CGCG	2 cut(s)	249, 403
BshFI	GGCC	2 cut(s)	98, 275
BsiHKCI	CYCGRG	1 cut(s)	179
BslI	CCNNNNNNNGG	3 cut(s)	180, 215, 315
BsnI	GGCC	2 cut(s)	98, 275
BsoBI	CYCGRG	1 cut(s)	179
Bsp120I	GGGCCC	1 cut(s)	273
Bsp1286I	GDGCHC	1 cut(s)	277
Bsp143I	GATC	4 cut(s)	48, 53, 201, 267
Bsp1720I	GCTNAGC	1 cut(s)	135
BspACI	CCGC	4 cut(s)	44, 72, 99, 247
BspANI	GGCC	2 cut(s)	98, 275
BspFNI	CGCG	2 cut(s)	249, 403
BspLI	GGNNCC	1 cut(s)	275
BspMAI	CTGCAG	1 cut(s)	300
BspMI	ACCTGC	1 cut(s)	140
BspPI	GGATC	1 cut(s)	48
BsrI	ACTGG	3 cut(s)	60, 73, 105
BssECI	CCNNGG	4 cut(s)	30, 141, 178, 226
BssMI	GATC	4 cut(s)	48, 53, 201, 267
BssNI	GRCGYC	2 cut(s)	5, 231
BssT1I	CCWWGG	1 cut(s)	141
Bst2UI	CCWGG	1 cut(s)	31
Bst4CI	ACNGT	1 cut(s)	329
BstACI	GRCGYC	2 cut(s)	5, 231
BstDEI	CTNAG	1 cut(s)	135
BstFNI	CGCG	2 cut(s)	249, 403
BstHHI	GCGC	2 cut(s)	251, 405
BstKTI	GATC	4 cut(s)	51, 56, 204, 270
BstMBI	GATC	4 cut(s)	48, 53, 201, 267
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 107, 228, 400
BstNI	CCWGG	1 cut(s)	31
BstSCI	CCNGG	1 cut(s)	29
BstSFI	CTRYAG	1 cut(s)	296
BstSLI	GKGCMC	1 cut(s)	277
BstUI	CGCG	2 cut(s)	249, 403
BstV1I	GCAGC	2 cut(s)	64, 381
BstX2I	RGATCY	2 cut(s)	53, 267
BstYI	RGATCY	2 cut(s)	53, 267
BsuRI	GGCC	2 cut(s)	98, 275
BtsIMutI	CAGTG	2 cut(s)	66, 112
BveI	ACCTGC	1 cut(s)	140
CfoI	GCGC	2 cut(s)	251, 405
Cfr13I	GGNCC	2 cut(s)	273, 274
CseI	GACGC	1 cut(s)	220
CviAII	CATG	1 cut(s)	40
DdeI	CTNAG	1 cut(s)	135
DpnI	GATC	4 cut(s)	50, 55, 203, 269
DpnII	GATC	4 cut(s)	48, 53, 201, 267
DraIII	CACNNNGTG	1 cut(s)	412
EciI	GGCGGA	1 cut(s)	87
Eco130I	CCWWGG	1 cut(s)	141
Eco24I	GRGCYC	1 cut(s)	277
Eco88I	CYCGRG	1 cut(s)	179
EcoRII	CCWGG	1 cut(s)	29
EcoT14I	CCWWGG	1 cut(s)	141
EcoT38I	GRGCYC	1 cut(s)	277
ErhI	CCWWGG	1 cut(s)	141
FaeI	CATG	1 cut(s)	43
FaiI	YATR	1 cut(s)	41
FatI	CATG	1 cut(s)	39
FauI	CCCGC	1 cut(s)	254
Fnu4HI	GCNGC	4 cut(s)	45, 78, 99, 395
FriOI	GRGCYC	1 cut(s)	277
Fsp4HI	GCNGC	4 cut(s)	45, 78, 99, 395
GlaI	GCGC	2 cut(s)	250, 404
GluI	GCNGC	4 cut(s)	45, 78, 99, 395
GsuI	CTGGAG	2 cut(s)	43, 192
HaeIII	GGCC	2 cut(s)	98, 275
HgaI	GACGC	1 cut(s)	220
HhaI	GCGC	2 cut(s)	251, 405
Hin1I	GRCGYC	2 cut(s)	5, 231
Hin1II	CATG	1 cut(s)	43
Hin6I	GCGC	2 cut(s)	249, 403
HinP1I	GCGC	2 cut(s)	249, 403
HinfI	GANTC	4 cut(s)	155, 196, 239, 301
HphI	GGTGA	1 cut(s)	164
Hpy188I	TCNGA	3 cut(s)	53, 117, 201
Hpy188III	TCNNGA	2 cut(s)	181, 380
HpyAV	CCTTC	4 cut(s)	88, 124, 350, 409
HpyCH4III	ACNGT	1 cut(s)	329
HpyCH4V	TGCA	1 cut(s)	298
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 107, 228, 400
HpyF3I	CTNAG	1 cut(s)	135
Hsp92I	GRCGYC	2 cut(s)	5, 231
Hsp92II	CATG	1 cut(s)	43
HspAI	GCGC	2 cut(s)	249, 403
Kzo9I	GATC	4 cut(s)	48, 53, 201, 267
LmnI	GCTCC	2 cut(s)	74, 291
Lsp1109I	GCAGC	2 cut(s)	64, 381
MalI	GATC	4 cut(s)	50, 55, 203, 269
MboI	GATC	4 cut(s)	48, 53, 201, 267
MflI	RGATCY	2 cut(s)	53, 267
MhlI	GDGCHC	1 cut(s)	277
MluCI	AATT	1 cut(s)	384
MlyI	GAGTC	2 cut(s)	190, 248
MnlI	CCTC	6 cut(s)	67, 100, 188, 236, 253, 309
MspR9I	CCNGG	1 cut(s)	31
MvaI	CCWGG	1 cut(s)	31
MvnI	CGCG	2 cut(s)	249, 403
MwoI	GCNNNNNNNGC	4 cut(s)	41, 107, 228, 400
NdeII	GATC	4 cut(s)	48, 53, 201, 267
NlaIII	CATG	1 cut(s)	43
NlaIV	GGNNCC	1 cut(s)	275
NmeAIII	GCCGAG	1 cut(s)	207
PaqCI	CACCTGC	1 cut(s)	140
PfeI	GAWTC	2 cut(s)	155, 301
PkrI	GCNGC	4 cut(s)	46, 79, 100, 396
PleI	GAGTC	2 cut(s)	190, 247
PpsI	GAGTC	2 cut(s)	190, 247
Psp6I	CCWGG	1 cut(s)	29
PspGI	CCWGG	1 cut(s)	29
PspN4I	GGNNCC	1 cut(s)	275
PspOMI	GGGCCC	1 cut(s)	273
PspPI	GGNCC	2 cut(s)	273, 274
PstI	CTGCAG	1 cut(s)	300
PsuI	RGATCY	2 cut(s)	53, 267
SatI	GCNGC	4 cut(s)	45, 78, 99, 395
Sau3AI	GATC	4 cut(s)	48, 53, 201, 267
Sau96I	GGNCC	2 cut(s)	273, 274
SchI	GAGTC	2 cut(s)	190, 248
ScrFI	CCNGG	1 cut(s)	31
SduI	GDGCHC	1 cut(s)	277
SetI	ASST	8 cut(s)	79, 154, 214, 224, 259, 288, 342, 396
SfcI	CTRYAG	1 cut(s)	296
Sse9I	AATT	1 cut(s)	384
SsiI	CCGC	4 cut(s)	44, 72, 99, 247
StyD4I	CCNGG	1 cut(s)	29
StyI	CCWWGG	1 cut(s)	141
TaaI	ACNGT	1 cut(s)	329
TaqI	TCGA	3 cut(s)	11, 92, 158
TasI	AATT	1 cut(s)	384
TauI	GCSGC	2 cut(s)	47, 101
TfiI	GAWTC	2 cut(s)	155, 301
TscAI	CASTG	2 cut(s)	73, 112
TseI	GCWGC	2 cut(s)	77, 394
TspRI	CASTG	2 cut(s)	73, 112
XcmI	CCANNNNNNNNNTGG	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.