pycom02g20020

Upstream activation factor subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0011758
Physical Location & Seq
Forward (+)
18148205 .. 18150173
1969 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g20020.1

Sequence Viewer

Length: 438 bp
ATGGCGTCTTCCAGTTTGATTAGGGTTTGCAGGGCTGTGACAGCGGCGACCAGGTCCTCCAGTTCCACCGGCGGAGCTGCTCTCTTTTCCTCGAAGCCCGCCACCAATACTATTCCGAAGCCAAAGGCAAAGGCGAAGGCGAAGGCTAAGCCCAAGGAAGCAGGTGTTTCGACCAAGCCCAAACCCACGCTTGGGATTATGAAGCCGATTCCGATCTCTCCAGCTCTGGGAAGCTTCCTCGGCGTCAAGGAGTCCTCCCGCGCCGAAGCTGTCAATCCGATCTGGGCCCACATCAAGCTCCACAACCTGCAGAATCCTGCCAACAAGAGGGAGATTTACTGTGATGACAAGCTAAAGGAGATTTTTGAAGGGAAGGAAAAAGTGGGCTTTCTGGAAATTGGGAAGCTGCTCTCGCGCCACTTTGTGAAGGCTGAATGA

Protein Analysis

146

Amino Acids

15.52

Weight (kDa)

10.13

Isoelectric Point (pI)

35.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIB PF02201 68 - 141 9.6e-29 SWIB/MDM2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011758)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31760 AT2G35605 AT3G03590 AT3G48600 AT3G48600
fragaria_vesca FvH4_7g08300 FvH4_7g08300
malus_domestica MD02G1231800.v1.1 MD07G1081700.v1.1
prunus_persica Prupe.2G106900_v2.0.a1
pyrus_communis pycom02g20020 pycom07g06500
rosa_chinensis RchiOBHm_Chr1g0340731
rosa_laevigata RLG00000029041
rosa_multiflora Rmu_sc0001211.1_g000138
rosa_roxburghii Rroxscaffold_4G00311370
rosa_samantha Rh1BG144800 Rh1DG176500
rosa_wichuraiana Rw1G014750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 152
Acc36I ACCTGC 2 cut(s) 152, 315
AccII CGCG 2 cut(s) 261, 415
AciI CCGC 4 cut(s) 44, 72, 99, 259
AcyI GRCGYC 2 cut(s) 5, 243
AdeI CACNNNGTG 1 cut(s) 424
AfiI CCNNNNNNNGG 4 cut(s) 191, 192, 227, 327
AgsI TTSAA 1 cut(s) 368
AjnI CCWGG 1 cut(s) 50
AluBI AGCT 7 cut(s) 77, 224, 234, 269, 298, 352, 406
AluI AGCT 7 cut(s) 77, 224, 234, 269, 298, 352, 406
AoxI GGCC 1 cut(s) 285
ApaI GGGCCC 1 cut(s) 289
ApeKI GCWGC 2 cut(s) 77, 406
AspLEI GCGC 2 cut(s) 263, 417
AspS9I GGNCC 3 cut(s) 54, 285, 286
AvaII GGWCC 1 cut(s) 54
BaeGI GKGCMC 1 cut(s) 289
BanII GRGCYC 1 cut(s) 289
BbvI GCAGC 2 cut(s) 64, 393
BcgI CGANNNNNNTGC 2 cut(s) 150, 184
BciT130I CCWGG 1 cut(s) 52
BfmI CTRYAG 1 cut(s) 308
BfuAI ACCTGC 2 cut(s) 152, 315
BisI GCNGC 3 cut(s) 45, 78, 407
BlpI GCTNAGC 1 cut(s) 147
BlsI GCNGC 3 cut(s) 46, 79, 408
Bme1390I CCNGG 1 cut(s) 52
Bme18I GGWCC 1 cut(s) 54
BmgT120I GGNCC 3 cut(s) 54, 285, 286
BmiI GGNNCC 1 cut(s) 287
BmrFI CCNGG 1 cut(s) 52
BplI GAGNNNNNCTC 2 cut(s) 66, 98
BpmI CTGGAG 2 cut(s) 43, 204
Bpu1102I GCTNAGC 1 cut(s) 147
BsaBI GATNNNNATC 1 cut(s) 212
BsaHI GRCGYC 2 cut(s) 5, 243
BsaJI CCNNGG 2 cut(s) 153, 238
Bsc4I CCNNNNNNNGG 4 cut(s) 191, 192, 227, 327
Bse118I RCCGGY 1 cut(s) 68
Bse1I ACTGG 2 cut(s) 12, 60
Bse8I GATNNNNATC 1 cut(s) 212
BseBI CCWGG 1 cut(s) 52
BseDI CCNNGG 2 cut(s) 153, 238
BseJI GATNNNNATC 1 cut(s) 212
BseLI CCNNNNNNNGG 4 cut(s) 191, 192, 227, 327
BseNI ACTGG 2 cut(s) 12, 60
BseSI GKGCMC 1 cut(s) 289
BseXI GCAGC 2 cut(s) 64, 393
Bsh1236I CGCG 2 cut(s) 261, 415
BshFI GGCC 1 cut(s) 287
BsiSI CCGG 1 cut(s) 69
BslI CCNNNNNNNGG 4 cut(s) 191, 192, 227, 327
BsnI GGCC 1 cut(s) 287
Bsp120I GGGCCC 1 cut(s) 285
Bsp1286I GDGCHC 1 cut(s) 289
Bsp143I GATC 2 cut(s) 213, 279
Bsp1720I GCTNAGC 1 cut(s) 147
BspACI CCGC 4 cut(s) 44, 72, 99, 259
BspANI GGCC 1 cut(s) 287
BspFNI CGCG 2 cut(s) 261, 415
BspLI GGNNCC 1 cut(s) 287
BspMAI CTGCAG 1 cut(s) 312
BspMI ACCTGC 2 cut(s) 152, 315
BsrFI RCCGGY 1 cut(s) 68
BsrI ACTGG 2 cut(s) 12, 60
BssAI RCCGGY 1 cut(s) 68
BssECI CCNNGG 2 cut(s) 153, 238
BssMI GATC 2 cut(s) 213, 279
BssNI GRCGYC 2 cut(s) 5, 243
BssT1I CCWWGG 1 cut(s) 153
Bst2UI CCWGG 1 cut(s) 52
Bst4CI ACNGT 1 cut(s) 341
BstACI GRCGYC 2 cut(s) 5, 243
BstC8I GCNNGC 1 cut(s) 99
BstDEI CTNAG 1 cut(s) 147
BstFNI CGCG 2 cut(s) 261, 415
BstHHI GCGC 2 cut(s) 263, 417
BstKTI GATC 2 cut(s) 216, 282
BstMBI GATC 2 cut(s) 213, 279
BstMWI GCNNNNNNNGC 3 cut(s) 41, 240, 412
BstNI CCWGG 1 cut(s) 52
BstSCI CCNGG 1 cut(s) 50
BstSFI CTRYAG 1 cut(s) 308
BstSLI GKGCMC 1 cut(s) 289
BstUI CGCG 2 cut(s) 261, 415
BstV1I GCAGC 2 cut(s) 64, 393
BsuRI GGCC 1 cut(s) 287
BveI ACCTGC 2 cut(s) 152, 315
Cac8I GCNNGC 1 cut(s) 99
CfoI GCGC 2 cut(s) 263, 417
Cfr10I RCCGGY 1 cut(s) 68
Cfr13I GGNCC 3 cut(s) 54, 285, 286
CseI GACGC 1 cut(s) 232
CsiI ACCWGGT 1 cut(s) 50
DdeI CTNAG 1 cut(s) 147
DpnI GATC 2 cut(s) 215, 281
DpnII GATC 2 cut(s) 213, 279
DraIII CACNNNGTG 1 cut(s) 424
EciI GGCGGA 1 cut(s) 87
Eco130I CCWWGG 1 cut(s) 153
Eco24I GRGCYC 1 cut(s) 289
Eco47I GGWCC 1 cut(s) 54
EcoO109I RGGNCCY 1 cut(s) 54
EcoRII CCWGG 1 cut(s) 50
EcoT14I CCWWGG 1 cut(s) 153
EcoT38I GRGCYC 1 cut(s) 289
ErhI CCWWGG 1 cut(s) 153
FaiI YATR 1 cut(s) 200
FauI CCCGC 2 cut(s) 106, 266
Fnu4HI GCNGC 3 cut(s) 45, 78, 407
FriOI GRGCYC 1 cut(s) 289
Fsp4HI GCNGC 3 cut(s) 45, 78, 407
GlaI GCGC 2 cut(s) 262, 416
GluI GCNGC 3 cut(s) 45, 78, 407
GsuI CTGGAG 2 cut(s) 43, 204
HaeIII GGCC 1 cut(s) 287
HapII CCGG 1 cut(s) 69
HgaI GACGC 1 cut(s) 232
HhaI GCGC 2 cut(s) 263, 417
Hin1I GRCGYC 2 cut(s) 5, 243
Hin6I GCGC 2 cut(s) 261, 415
HinP1I GCGC 2 cut(s) 261, 415
HindIII AAGCTT 1 cut(s) 232
HinfI GANTC 3 cut(s) 208, 251, 313
HpaII CCGG 1 cut(s) 69
Hpy188I TCNGA 3 cut(s) 117, 213, 279
Hpy188III TCNNGA 1 cut(s) 392
HpyAV CCTTC 5 cut(s) 130, 136, 362, 367, 421
HpyCH4III ACNGT 1 cut(s) 341
HpyCH4V TGCA 2 cut(s) 30, 310
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 240, 412
HpyF3I CTNAG 1 cut(s) 147
Hsp92I GRCGYC 2 cut(s) 5, 243
HspAI GCGC 2 cut(s) 261, 415
Kzo9I GATC 2 cut(s) 213, 279
LmnI GCTCC 2 cut(s) 74, 303
Lsp1109I GCAGC 2 cut(s) 64, 393
MabI ACCWGGT 1 cut(s) 50
MaeIII GTNAC 1 cut(s) 37
MalI GATC 2 cut(s) 215, 281
MboI GATC 2 cut(s) 213, 279
MhlI GDGCHC 1 cut(s) 289
MluCI AATT 1 cut(s) 396
MlyI GAGTC 1 cut(s) 260
MnlI CCTC 5 cut(s) 67, 100, 248, 265, 321
MspA1I CMGCKG 1 cut(s) 44
MspI CCGG 1 cut(s) 69
MspR9I CCNGG 1 cut(s) 52
MvaI CCWGG 1 cut(s) 52
MvnI CGCG 2 cut(s) 261, 415
MwoI GCNNNNNNNGC 3 cut(s) 41, 240, 412
NdeII GATC 2 cut(s) 213, 279
NlaIV GGNNCC 1 cut(s) 287
NmeAIII GCCGAG 1 cut(s) 219
NmuCI GTSAC 1 cut(s) 37
PaqCI CACCTGC 1 cut(s) 152
PfeI GAWTC 2 cut(s) 208, 313
PflFI GACNNNGTC 1 cut(s) 52
PkrI GCNGC 3 cut(s) 46, 79, 408
PleI GAGTC 1 cut(s) 259
PpsI GAGTC 1 cut(s) 259
PpuMI RGGWCCY 1 cut(s) 54
Psp5II RGGWCCY 1 cut(s) 54
Psp6I CCWGG 1 cut(s) 50
PspGI CCWGG 1 cut(s) 50
PspN4I GGNNCC 1 cut(s) 287
PspOMI GGGCCC 1 cut(s) 285
PspPI GGNCC 3 cut(s) 54, 285, 286
PspPPI RGGWCCY 1 cut(s) 54
PstI CTGCAG 1 cut(s) 312
PsyI GACNNNGTC 1 cut(s) 52
SatI GCNGC 3 cut(s) 45, 78, 407
Sau3AI GATC 2 cut(s) 213, 279
Sau96I GGNCC 3 cut(s) 54, 285, 286
SchI GAGTC 1 cut(s) 260
ScrFI CCNGG 1 cut(s) 52
SduI GDGCHC 1 cut(s) 289
SexAI ACCWGGT 1 cut(s) 50
SfcI CTRYAG 1 cut(s) 308
SgrAI CRCCGGYG 1 cut(s) 68
SinI GGWCC 1 cut(s) 54
Sse9I AATT 1 cut(s) 396
SsiI CCGC 4 cut(s) 44, 72, 99, 259
StyD4I CCNGG 1 cut(s) 50
StyI CCWWGG 1 cut(s) 153
TaaI ACNGT 1 cut(s) 341
TaqI TCGA 2 cut(s) 92, 170
TasI AATT 1 cut(s) 396
TauI GCSGC 1 cut(s) 47
TfiI GAWTC 2 cut(s) 208, 313
TseFI GTSAC 1 cut(s) 37
TseI GCWGC 2 cut(s) 77, 406
Tsp45I GTSAC 1 cut(s) 37
TspDTI ATGAA 1 cut(s) 215
Tth111I GACNNNGTC 1 cut(s) 52
VpaK11BI GGWCC 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.