Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0011758

Physical Location & Seq

Genomic Coordinates Reverse (-)

16459027 .. 16461592

Gene Structure 2566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G106900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGTCGTCTTCCAATGTGTTTAGGGTTTTCAGAGGATGCAGGGCTCTCATGGCACCGGCCAGATCCTCCAGCTCCACTGCTGGAGCTGCTGTTTCTGCCTCAAAGGCCGCCACTGCTGCCGAACCAAAGCCAAAGGCCAAGCCCAAGGCCAAGCCCAAGGCAGCAGCTGACTCGACCAAACCCAAAATCCCTAACAGGAGCCTCGGGATTATGAAGCCAACGCCGATCTCACCAGCTCTTGGTAGCTTCCTTGGCGCCTCTGAGTCCTCTCGTGCTGAGGCCGTCAAGCAGATCTGGGCCCACATCAAGCTCCACAACCTGCAGAATCCTGCTAATAAGAGGGAGATCCACTGTGATGACAAGCTCAAGGCAATTTTTGAAGGGAAGGAAAAAGTCGGCTTTTTGGAAATTGGGAAGCTTCTTTCGCGCCACTTTGTGAAGACTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SWIB

Protein Analysis

150

Amino Acids

15.9

Weight (kDa)

10.33

Isoelectric Point (pI)

47.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31760 AT2G35605 AT3G03590 AT3G48600 AT3G48600
fragaria_vesca	FvH4_7g08300 FvH4_7g08300
malus_domestica	MD02G1231800.v1.1 MD07G1081700.v1.1
prunus_persica	Prupe.2G106900_v2.0.a1
pyrus_communis	pycom02g20020 pycom07g06500
rosa_chinensis	RchiOBHm_Chr1g0340731
rosa_laevigata	RLG00000029041
rosa_multiflora	Rmu_sc0001211.1_g000138
rosa_roxburghii	Rroxscaffold_4G00311370
rosa_samantha	Rh1BG144800 Rh1DG176500
rosa_wichuraiana	Rw1G014750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	327
AccB1I	GGYRCC	2 cut(s)	52, 254
AccB7I	CCANNNNNTGG	1 cut(s)	239
AccII	CGCG	1 cut(s)	427
AciI	CCGC	1 cut(s)	108
AclWI	GGATC	2 cut(s)	57, 340
AcoI	YGGCCR	1 cut(s)	57
AcyI	GRCGYC	1 cut(s)	255
AdeI	CACNNNGTG	1 cut(s)	436
AfiI	CCNNNNNNNGG	1 cut(s)	239
AgsI	TTSAA	1 cut(s)	380
AluBI	AGCT	8 cut(s)	72, 86, 167, 236, 246, 310, 364, 418
AluI	AGCT	8 cut(s)	72, 86, 167, 236, 246, 310, 364, 418
AlwI	GGATC	2 cut(s)	57, 340
AlwNI	CAGNNNCTG	1 cut(s)	167
Ama87I	CYCGRG	1 cut(s)	203
AoxI	GGCC	6 cut(s)	57, 105, 135, 147, 279, 297
ApaI	GGGCCC	1 cut(s)	301
ApeKI	GCWGC	4 cut(s)	86, 116, 161, 164
AspLEI	GCGC	2 cut(s)	257, 429
AspS9I	GGNCC	2 cut(s)	297, 298
AsuHPI	GGTGA	1 cut(s)	222
AvaI	CYCGRG	1 cut(s)	203
BaeGI	GKGCMC	1 cut(s)	301
BanI	GGYRCC	2 cut(s)	52, 254
BanII	GRGCYC	2 cut(s)	46, 301
BauI	CACGAG	1 cut(s)	270
BbsI	GAAGAC	1 cut(s)	446
BbvCI	CCTCAGC	1 cut(s)	276
BbvI	GCAGC	4 cut(s)	73, 103, 173, 176
BceAI	ACGGC	1 cut(s)	266
BcgI	CGANNNNNNTGC	2 cut(s)	153, 187
BfmI	CTRYAG	1 cut(s)	320
BfoI	RGCGCY	1 cut(s)	258
BfuAI	ACCTGC	1 cut(s)	327
BglI	GCCNNNNNGGC	1 cut(s)	104
BglII	AGATCT	1 cut(s)	291
BisI	GCNGC	5 cut(s)	87, 108, 117, 162, 165
BlsI	GCNGC	5 cut(s)	88, 109, 118, 163, 166
BmeT110I	CYCGRG	1 cut(s)	203
BmgT120I	GGNCC	2 cut(s)	297, 298
BmiI	GGNNCC	4 cut(s)	54, 200, 256, 299
BmsI	GCATC	1 cut(s)	26
BpiI	GAAGAC	1 cut(s)	446
BpmI	CTGGAG	2 cut(s)	52, 102
Bpu10I	CCTNAGC	1 cut(s)	276
BpuEI	CTTGAG	1 cut(s)	350
BsaHI	GRCGYC	1 cut(s)	255
BsaJI	CCNNGG	4 cut(s)	144, 156, 202, 250
BsaXI	ACNNNNNCTCC	2 cut(s)	75, 105
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
Bse118I	RCCGGY	1 cut(s)	55
BseDI	CCNNGG	4 cut(s)	144, 156, 202, 250
BseGI	GGATG	1 cut(s)	41
BseLI	CCNNNNNNNGG	1 cut(s)	239
BseMII	CTCAG	2 cut(s)	252, 267
BseSI	GKGCMC	1 cut(s)	301
BseXI	GCAGC	4 cut(s)	73, 103, 173, 176
Bsh1236I	CGCG	1 cut(s)	427
BshFI	GGCC	6 cut(s)	59, 107, 137, 149, 281, 299
BshNI	GGYRCC	2 cut(s)	52, 254
BsiHKCI	CYCGRG	1 cut(s)	203
BsiSI	CCGG	1 cut(s)	56
BslI	CCNNNNNNNGG	1 cut(s)	239
BsnI	GGCC	6 cut(s)	59, 107, 137, 149, 281, 299
BsoBI	CYCGRG	1 cut(s)	203
Bsp120I	GGGCCC	1 cut(s)	297
Bsp1286I	GDGCHC	2 cut(s)	46, 301
Bsp143I	GATC	4 cut(s)	62, 225, 291, 345
BspACI	CCGC	1 cut(s)	108
BspANI	GGCC	6 cut(s)	59, 107, 137, 149, 281, 299
BspCNI	CTCAG	2 cut(s)	253, 268
BspFNI	CGCG	1 cut(s)	427
BspLI	GGNNCC	4 cut(s)	54, 200, 256, 299
BspMAI	CTGCAG	1 cut(s)	324
BspMI	ACCTGC	1 cut(s)	327
BspPI	GGATC	2 cut(s)	57, 340
BspT107I	GGYRCC	2 cut(s)	52, 254
BsrFI	RCCGGY	1 cut(s)	55
BssAI	RCCGGY	1 cut(s)	55
BssECI	CCNNGG	4 cut(s)	144, 156, 202, 250
BssMI	GATC	4 cut(s)	62, 225, 291, 345
BssNI	GRCGYC	1 cut(s)	255
BssSI	CACGAG	1 cut(s)	270
BssT1I	CCWWGG	3 cut(s)	144, 156, 250
Bst2BI	CACGAG	1 cut(s)	270
Bst4CI	ACNGT	1 cut(s)	353
BstACI	GRCGYC	1 cut(s)	255
BstDEI	CTNAG	2 cut(s)	261, 276
BstF5I	GGATG	1 cut(s)	41
BstFNI	CGCG	1 cut(s)	427
BstH2I	RGCGCY	1 cut(s)	258
BstHHI	GCGC	2 cut(s)	257, 429
BstKTI	GATC	4 cut(s)	65, 228, 294, 348
BstMBI	GATC	4 cut(s)	62, 225, 291, 345
BstMWI	GCNNNNNNNGC	8 cut(s)	50, 86, 95, 104, 113, 116, 252, 424
BstSFI	CTRYAG	1 cut(s)	320
BstSLI	GKGCMC	1 cut(s)	301
BstUI	CGCG	1 cut(s)	427
BstV1I	GCAGC	4 cut(s)	73, 103, 173, 176
BstV2I	GAAGAC	1 cut(s)	446
BstX2I	RGATCY	3 cut(s)	62, 291, 345
BstYI	RGATCY	3 cut(s)	62, 291, 345
BsuRI	GGCC	6 cut(s)	59, 107, 137, 149, 281, 299
BtsCI	GGATG	1 cut(s)	41
BtsI	GCAGTG	2 cut(s)	75, 111
BtsIMutI	CAGTG	3 cut(s)	75, 111, 349
BveI	ACCTGC	1 cut(s)	327
CaiI	CAGNNNCTG	1 cut(s)	167
CfoI	GCGC	2 cut(s)	257, 429
Cfr10I	RCCGGY	1 cut(s)	55
Cfr13I	GGNCC	2 cut(s)	297, 298
CviAII	CATG	1 cut(s)	49
DdeI	CTNAG	2 cut(s)	261, 276
DinI	GGCGCC	1 cut(s)	256
DpnI	GATC	4 cut(s)	64, 227, 293, 347
DpnII	GATC	4 cut(s)	62, 225, 291, 345
DraIII	CACNNNGTG	1 cut(s)	436
EaeI	YGGCCR	1 cut(s)	57
Eco130I	CCWWGG	3 cut(s)	144, 156, 250
Eco24I	GRGCYC	2 cut(s)	46, 301
Eco88I	CYCGRG	1 cut(s)	203
EcoT14I	CCWWGG	3 cut(s)	144, 156, 250
EcoT38I	GRGCYC	2 cut(s)	46, 301
EgeI	GGCGCC	1 cut(s)	256
EheI	GGCGCC	1 cut(s)	256
ErhI	CCWWGG	3 cut(s)	144, 156, 250
FaeI	CATG	1 cut(s)	52
FaiI	YATR	2 cut(s)	50, 212
FatI	CATG	1 cut(s)	48
Fnu4HI	GCNGC	5 cut(s)	87, 108, 117, 162, 165
FokI	GGATG	1 cut(s)	48
FriOI	GRGCYC	2 cut(s)	46, 301
Fsp4HI	GCNGC	5 cut(s)	87, 108, 117, 162, 165
GlaI	GCGC	2 cut(s)	256, 428
GluI	GCNGC	5 cut(s)	87, 108, 117, 162, 165
GsuI	CTGGAG	2 cut(s)	52, 102
HaeII	RGCGCY	1 cut(s)	258
HaeIII	GGCC	6 cut(s)	59, 107, 137, 149, 281, 299
HapII	CCGG	1 cut(s)	56
HhaI	GCGC	2 cut(s)	257, 429
Hin1I	GRCGYC	1 cut(s)	255
Hin1II	CATG	1 cut(s)	52
Hin6I	GCGC	2 cut(s)	255, 427
HinP1I	GCGC	2 cut(s)	255, 427
HindIII	AAGCTT	1 cut(s)	416
HinfI	GANTC	3 cut(s)	170, 263, 325
HpaII	CCGG	1 cut(s)	56
HphI	GGTGA	1 cut(s)	222
Hpy188I	TCNGA	2 cut(s)	32, 262
Hpy188III	TCNNGA	1 cut(s)	205
HpyAV	CCTTC	2 cut(s)	374, 379
HpyCH4III	ACNGT	1 cut(s)	353
HpyCH4V	TGCA	2 cut(s)	39, 322
HpyF10VI	GCNNNNNNNGC	8 cut(s)	50, 86, 95, 104, 113, 116, 252, 424
HpyF3I	CTNAG	2 cut(s)	261, 276
Hsp92I	GRCGYC	1 cut(s)	255
Hsp92II	CATG	1 cut(s)	52
HspAI	GCGC	2 cut(s)	255, 427
KasI	GGCGCC	1 cut(s)	254
Kzo9I	GATC	4 cut(s)	62, 225, 291, 345
LmnI	GCTCC	4 cut(s)	77, 83, 198, 315
Lsp1109I	GCAGC	4 cut(s)	73, 103, 173, 176
LweI	GCATC	1 cut(s)	26
MalI	GATC	4 cut(s)	64, 227, 293, 347
MboI	GATC	4 cut(s)	62, 225, 291, 345
MflI	RGATCY	3 cut(s)	62, 291, 345
MhlI	GDGCHC	2 cut(s)	46, 301
MluCI	AATT	2 cut(s)	372, 408
Mly113I	GGCGCC	1 cut(s)	255
MlyI	GAGTC	2 cut(s)	164, 272
MnlI	CCTC	8 cut(s)	26, 76, 109, 212, 268, 271, 277, 333
MslI	CAYNNNNRTG	1 cut(s)	354
MspA1I	CMGCKG	1 cut(s)	167
MspI	CCGG	1 cut(s)	56
MvnI	CGCG	1 cut(s)	427
MwoI	GCNNNNNNNGC	8 cut(s)	50, 86, 95, 104, 113, 116, 252, 424
NarI	GGCGCC	1 cut(s)	255
NdeII	GATC	4 cut(s)	62, 225, 291, 345
NlaIII	CATG	1 cut(s)	52
NlaIV	GGNNCC	4 cut(s)	54, 200, 256, 299
PfeI	GAWTC	1 cut(s)	325
PflMI	CCANNNNNTGG	1 cut(s)	239
PkrI	GCNGC	5 cut(s)	88, 109, 118, 163, 166
PleI	GAGTC	2 cut(s)	164, 271
PluTI	GGCGCC	1 cut(s)	258
PpsI	GAGTC	2 cut(s)	164, 271
PspN4I	GGNNCC	4 cut(s)	54, 200, 256, 299
PspOMI	GGGCCC	1 cut(s)	297
PspPI	GGNCC	2 cut(s)	297, 298
PstI	CTGCAG	1 cut(s)	324
PstNI	CAGNNNCTG	1 cut(s)	167
PsuI	RGATCY	3 cut(s)	62, 291, 345
PvuII	CAGCTG	1 cut(s)	167
RseI	CAYNNNNRTG	1 cut(s)	354
SatI	GCNGC	5 cut(s)	87, 108, 117, 162, 165
Sau3AI	GATC	4 cut(s)	62, 225, 291, 345
Sau96I	GGNCC	2 cut(s)	297, 298
SchI	GAGTC	2 cut(s)	164, 272
SduI	GDGCHC	2 cut(s)	46, 301
SetI	ASST	9 cut(s)	74, 88, 169, 238, 248, 312, 321, 366, 420
SfaNI	GCATC	1 cut(s)	26
SfcI	CTRYAG	1 cut(s)	320
SfoI	GGCGCC	1 cut(s)	256
SmiMI	CAYNNNNRTG	1 cut(s)	354
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
Sse9I	AATT	2 cut(s)	372, 408
SsiI	CCGC	1 cut(s)	108
SspDI	GGCGCC	1 cut(s)	254
StyI	CCWWGG	3 cut(s)	144, 156, 250
TaaI	ACNGT	1 cut(s)	353
TaqI	TCGA	1 cut(s)	173
TasI	AATT	2 cut(s)	372, 408
TauI	GCSGC	1 cut(s)	110
TfiI	GAWTC	1 cut(s)	325
TscAI	CASTG	3 cut(s)	82, 118, 356
TseI	GCWGC	4 cut(s)	86, 116, 161, 164
TspDTI	ATGAA	1 cut(s)	227
TspRI	CASTG	3 cut(s)	82, 118, 356
Van91I	CCANNNNNTGG	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.