Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0011758

Physical Location & Seq

Genomic Coordinates Forward (+)

36128224 .. 36131037

Gene Structure 2814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG176500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGTCGTCCTCCACTGCCATTAGGATTTTCAGAGGCTGCCGTGCTCTCCTGGCGCCGGCCAAGTCCTCCACCTCCACCGCCGGAACCGCCGTCAAGGTCCCCGCTGCCGCACCAAAATCGAAGGCCAAGGCCAAGCCCAAGCCCAAAGCGGAAGTCGACGCGATCAAGCCGAAGAGAAACGTCAACAGGAACGCCGGCATTCTGAAGCCGACTCCGATCTCTCCAGCTCTCGGCAGCTTCCTCGGCGGCGCCCCTGAGTCCTCTCGCGCCGAGGCCGTGAAGCAGATCTGGAGCCACATCAAGCTCCACAACCTGCAGAATCCTGCCAACAAGAGGGAGATCATTTGCGATGACAAGCTGAAGGAGTTGTTTGAAGGGAAGGAAAAGGTCAACTTTTTGGAGATTGGGAAGTTGCTTTCGCGTCATTTTGTGAAGGCTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SWIB

Protein Analysis

147

Amino Acids

15.83

Weight (kDa)

10.26

Isoelectric Point (pI)

45.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIB	PF02201	69 - 143	3.7e-29	SWIB/MDM2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31760 AT2G35605 AT3G03590 AT3G48600 AT3G48600
fragaria_vesca	FvH4_7g08300 FvH4_7g08300
malus_domestica	MD02G1231800.v1.1 MD07G1081700.v1.1
prunus_persica	Prupe.2G106900_v2.0.a1
pyrus_communis	pycom02g20020 pycom07g06500
rosa_chinensis	RchiOBHm_Chr1g0340731
rosa_laevigata	RLG00000029041
rosa_multiflora	Rmu_sc0001211.1_g000138
rosa_roxburghii	Rroxscaffold_4G00311370
rosa_samantha	Rh1BG144800 Rh1DG176500
rosa_wichuraiana	Rw1G014750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	321
AccB1I	GGYRCC	2 cut(s)	52, 248
AccI	GTMKAC	1 cut(s)	156
AccII	CGCG	3 cut(s)	161, 267, 421
AciI	CCGC	6 cut(s)	78, 87, 102, 108, 149, 246
AcoI	YGGCCR	1 cut(s)	57
AcuI	CTGAAG	2 cut(s)	224, 380
AcyI	GRCGYC	2 cut(s)	53, 249
AfiI	CCNNNNNNNGG	3 cut(s)	55, 230, 333
AgsI	TTSAA	1 cut(s)	374
AjnI	CCWGG	1 cut(s)	48
AluBI	AGCT	4 cut(s)	227, 237, 304, 358
AluI	AGCT	4 cut(s)	227, 237, 304, 358
Alw21I	GWGCWC	1 cut(s)	46
AlwNI	CAGNNNCTG	1 cut(s)	36
AoxI	GGCC	4 cut(s)	57, 123, 129, 273
ApeKI	GCWGC	3 cut(s)	36, 104, 234
ArsI	GACNNNNNNTTYG	2 cut(s)	138, 170
AspLEI	GCGC	3 cut(s)	55, 251, 269
AspS9I	GGNCC	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	97
BanI	GGYRCC	2 cut(s)	52, 248
Bbv12I	GWGCWC	1 cut(s)	46
BbvI	GCAGC	3 cut(s)	23, 91, 246
BceAI	ACGGC	3 cut(s)	24, 74, 260
BcgI	CGANNNNNNTGC	4 cut(s)	99, 133, 223, 257
BciT130I	CCWGG	1 cut(s)	50
BfmI	CTRYAG	1 cut(s)	314
BfoI	RGCGCY	2 cut(s)	56, 252
BfuAI	ACCTGC	1 cut(s)	321
BglII	AGATCT	1 cut(s)	285
BisI	GCNGC	5 cut(s)	37, 105, 108, 235, 247
BlsI	GCNGC	5 cut(s)	38, 106, 109, 236, 248
Bme1390I	CCNGG	1 cut(s)	50
Bme18I	GGWCC	1 cut(s)	97
BmgT120I	GGNCC	1 cut(s)	97
BmiI	GGNNCC	5 cut(s)	54, 85, 99, 250, 293
BmrFI	CCNGG	1 cut(s)	50
BpmI	CTGGAG	2 cut(s)	207, 310
BsaHI	GRCGYC	2 cut(s)	53, 249
BsaJI	CCNNGG	3 cut(s)	126, 241, 270
Bsc4I	CCNNNNNNNGG	3 cut(s)	55, 230, 333
Bse118I	RCCGGY	2 cut(s)	55, 194
BseBI	CCWGG	1 cut(s)	50
BseDI	CCNNGG	3 cut(s)	126, 241, 270
BseLI	CCNNNNNNNGG	3 cut(s)	55, 230, 333
BseMII	CTCAG	2 cut(s)	246, 429
BseXI	GCAGC	3 cut(s)	23, 91, 246
Bsh1236I	CGCG	3 cut(s)	161, 267, 421
BshFI	GGCC	4 cut(s)	59, 125, 131, 275
BshNI	GGYRCC	2 cut(s)	52, 248
BsiHKAI	GWGCWC	1 cut(s)	46
BsiSI	CCGG	3 cut(s)	56, 81, 195
BslFI	GGGAC	1 cut(s)	83
BslI	CCNNNNNNNGG	3 cut(s)	55, 230, 333
BsmFI	GGGAC	1 cut(s)	83
BsmI	GAATGC	1 cut(s)	198
BsnI	GGCC	4 cut(s)	59, 125, 131, 275
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp143I	GATC	4 cut(s)	162, 216, 285, 339
BspACI	CCGC	6 cut(s)	78, 87, 102, 108, 149, 246
BspANI	GGCC	4 cut(s)	59, 125, 131, 275
BspCNI	CTCAG	2 cut(s)	247, 430
BspFNI	CGCG	3 cut(s)	161, 267, 421
BspLI	GGNNCC	5 cut(s)	54, 85, 99, 250, 293
BspMAI	CTGCAG	1 cut(s)	318
BspMI	ACCTGC	1 cut(s)	321
BspT107I	GGYRCC	2 cut(s)	52, 248
BsrFI	RCCGGY	2 cut(s)	55, 194
BssAI	RCCGGY	2 cut(s)	55, 194
BssECI	CCNNGG	3 cut(s)	126, 241, 270
BssMI	GATC	4 cut(s)	162, 216, 285, 339
BssNI	GRCGYC	2 cut(s)	53, 249
BssT1I	CCWWGG	1 cut(s)	126
Bst2UI	CCWGG	1 cut(s)	50
Bst6I	CTCTTC	1 cut(s)	167
BstACI	GRCGYC	2 cut(s)	53, 249
BstC8I	GCNNGC	2 cut(s)	57, 196
BstDEI	CTNAG	2 cut(s)	255, 438
BstFNI	CGCG	3 cut(s)	161, 267, 421
BstH2I	RGCGCY	2 cut(s)	56, 252
BstHHI	GCGC	3 cut(s)	55, 251, 269
BstKTI	GATC	4 cut(s)	165, 219, 288, 342
BstMBI	GATC	4 cut(s)	162, 216, 285, 339
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 86, 243
BstNI	CCWGG	1 cut(s)	50
BstSCI	CCNGG	1 cut(s)	48
BstSFI	CTRYAG	1 cut(s)	314
BstUI	CGCG	3 cut(s)	161, 267, 421
BstV1I	GCAGC	3 cut(s)	23, 91, 246
BstX2I	RGATCY	1 cut(s)	285
BstYI	RGATCY	1 cut(s)	285
BsuRI	GGCC	4 cut(s)	59, 125, 131, 275
BtgZI	GCGATG	1 cut(s)	363
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	1 cut(s)	12
BveI	ACCTGC	1 cut(s)	321
Cac8I	GCNNGC	2 cut(s)	57, 196
CaiI	CAGNNNCTG	1 cut(s)	36
CfoI	GCGC	3 cut(s)	55, 251, 269
Cfr10I	RCCGGY	2 cut(s)	55, 194
Cfr13I	GGNCC	1 cut(s)	97
CseI	GACGC	2 cut(s)	167, 410
DdeI	CTNAG	2 cut(s)	255, 438
DinI	GGCGCC	2 cut(s)	54, 250
DpnI	GATC	4 cut(s)	164, 218, 287, 341
DpnII	GATC	4 cut(s)	162, 216, 285, 339
EaeI	YGGCCR	1 cut(s)	57
Eam1104I	CTCTTC	1 cut(s)	167
EarI	CTCTTC	1 cut(s)	167
Eco130I	CCWWGG	1 cut(s)	126
Eco47I	GGWCC	1 cut(s)	97
Eco57I	CTGAAG	2 cut(s)	224, 380
EcoO109I	RGGNCCY	1 cut(s)	97
EcoRII	CCWGG	1 cut(s)	48
EcoT14I	CCWWGG	1 cut(s)	126
EgeI	GGCGCC	2 cut(s)	54, 250
EheI	GGCGCC	2 cut(s)	54, 250
ErhI	CCWWGG	1 cut(s)	126
FalI	AAGNNNNNCTT	2 cut(s)	377, 409
FaqI	GGGAC	1 cut(s)	83
FauI	CCCGC	1 cut(s)	109
FblI	GTMKAC	1 cut(s)	156
Fnu4HI	GCNGC	5 cut(s)	37, 105, 108, 235, 247
Fsp4HI	GCNGC	5 cut(s)	37, 105, 108, 235, 247
GlaI	GCGC	3 cut(s)	54, 250, 268
GluI	GCNGC	5 cut(s)	37, 105, 108, 235, 247
GsuI	CTGGAG	2 cut(s)	207, 310
HaeII	RGCGCY	2 cut(s)	56, 252
HaeIII	GGCC	4 cut(s)	59, 125, 131, 275
HapII	CCGG	3 cut(s)	56, 81, 195
HgaI	GACGC	2 cut(s)	167, 410
HhaI	GCGC	3 cut(s)	55, 251, 269
Hin1I	GRCGYC	2 cut(s)	53, 249
Hin6I	GCGC	3 cut(s)	53, 249, 267
HinP1I	GCGC	3 cut(s)	53, 249, 267
HincII	GTYRAC	3 cut(s)	157, 184, 391
HindII	GTYRAC	3 cut(s)	157, 184, 391
HinfI	GANTC	3 cut(s)	211, 257, 319
HpaII	CCGG	3 cut(s)	56, 81, 195
Hpy166II	GTNNAC	3 cut(s)	157, 184, 391
Hpy188I	TCNGA	3 cut(s)	32, 204, 216
Hpy188III	TCNNGA	1 cut(s)	289
Hpy8I	GTNNAC	3 cut(s)	157, 184, 391
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	5 cut(s)	115, 355, 368, 373, 427
HpyCH4IV	ACGT	1 cut(s)	180
HpyCH4V	TGCA	1 cut(s)	316
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 86, 243
HpyF3I	CTNAG	2 cut(s)	255, 438
HpySE526I	ACGT	1 cut(s)	180
Hsp92I	GRCGYC	2 cut(s)	53, 249
HspAI	GCGC	3 cut(s)	53, 249, 267
KasI	GGCGCC	2 cut(s)	52, 248
KroI	GCCGGC	2 cut(s)	55, 194
KroNI	GCCGGC	2 cut(s)	57, 196
Kzo9I	GATC	4 cut(s)	162, 216, 285, 339
LmnI	GCTCC	2 cut(s)	291, 309
Lsp1109I	GCAGC	3 cut(s)	23, 91, 246
MaeII	ACGT	1 cut(s)	180
MalI	GATC	4 cut(s)	164, 218, 287, 341
MboI	GATC	4 cut(s)	162, 216, 285, 339
MboII	GAAGA	1 cut(s)	184
MflI	RGATCY	1 cut(s)	285
MhlI	GDGCHC	1 cut(s)	46
Mly113I	GGCGCC	2 cut(s)	53, 249
MlyI	GAGTC	2 cut(s)	205, 266
MnlI	CCTC	8 cut(s)	19, 26, 76, 82, 251, 265, 271, 327
MroNI	GCCGGC	2 cut(s)	55, 194
MspA1I	CMGCKG	1 cut(s)	104
MspI	CCGG	3 cut(s)	56, 81, 195
MspR9I	CCNGG	1 cut(s)	50
Mva1269I	GAATGC	1 cut(s)	198
MvaI	CCWGG	1 cut(s)	50
MvnI	CGCG	3 cut(s)	161, 267, 421
MwoI	GCNNNNNNNGC	3 cut(s)	50, 86, 243
NaeI	GCCGGC	2 cut(s)	57, 196
NarI	GGCGCC	2 cut(s)	53, 249
NdeII	GATC	4 cut(s)	162, 216, 285, 339
NgoMIV	GCCGGC	2 cut(s)	55, 194
NlaIV	GGNNCC	5 cut(s)	54, 85, 99, 250, 293
NmeAIII	GCCGAG	3 cut(s)	210, 222, 295
PctI	GAATGC	1 cut(s)	198
PdiI	GCCGGC	2 cut(s)	57, 196
PfeI	GAWTC	1 cut(s)	319
PkrI	GCNGC	5 cut(s)	38, 106, 109, 236, 248
PleI	GAGTC	2 cut(s)	205, 265
PluTI	GGCGCC	2 cut(s)	56, 252
PpsI	GAGTC	2 cut(s)	205, 265
PpuMI	RGGWCCY	1 cut(s)	97
Psp5II	RGGWCCY	1 cut(s)	97
Psp6I	CCWGG	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	48
PspN4I	GGNNCC	5 cut(s)	54, 85, 99, 250, 293
PspPI	GGNCC	1 cut(s)	97
PspPPI	RGGWCCY	1 cut(s)	97
PstI	CTGCAG	1 cut(s)	318
PstNI	CAGNNNCTG	1 cut(s)	36
PsuI	RGATCY	1 cut(s)	285
SalI	GTCGAC	1 cut(s)	155
SatI	GCNGC	5 cut(s)	37, 105, 108, 235, 247
Sau3AI	GATC	4 cut(s)	162, 216, 285, 339
Sau96I	GGNCC	1 cut(s)	97
SchI	GAGTC	2 cut(s)	205, 266
ScrFI	CCNGG	1 cut(s)	50
SduI	GDGCHC	1 cut(s)	46
SetI	ASST	9 cut(s)	74, 99, 183, 229, 239, 306, 315, 360, 390
SfcI	CTRYAG	1 cut(s)	314
SfoI	GGCGCC	2 cut(s)	54, 250
SinI	GGWCC	1 cut(s)	97
SsiI	CCGC	6 cut(s)	78, 87, 102, 108, 149, 246
SspDI	GGCGCC	2 cut(s)	52, 248
StyD4I	CCNGG	1 cut(s)	48
StyI	CCWWGG	1 cut(s)	126
TaiI	ACGT	1 cut(s)	183
TaqI	TCGA	2 cut(s)	119, 156
TauI	GCSGC	2 cut(s)	110, 249
TfiI	GAWTC	1 cut(s)	319
TscAI	CASTG	1 cut(s)	19
TseI	GCWGC	3 cut(s)	36, 104, 234
TspRI	CASTG	1 cut(s)	19
VpaK11BI	GGWCC	1 cut(s)	97
XmiI	GTMKAC	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.