Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0011758

Physical Location & Seq

Genomic Coordinates Forward (+)

8215028 .. 8218292

Gene Structure 3265 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g08300.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGTCGTCGTCCACCGCGATTAGGGTTTTCAGAGGCTGCCGTGCTCTCCTTGCACCGGCCAAATCCTCCTCCTCCACCTCCAGTGCCGGAGCCTCCGCCGTCAAGGTCGCCGCCGCCGCCGCACCGAAATCGAAGGCCAAGGCGAAGGCCAAGGCCAAGGCGAAGCCGAAAACAGACGCCGACGCGATCAAGCCCAAGAGAAACGTCAACATGAACGCCGGCATTATGAAGCCGAGGCCGATCTCTCCAGCTCTCGGCAGCTTTCTCGGCGCCGCTGAGTCCTCTCGCGCCGAGGCCGTCAAGCAAATCTGGGACCACATCAAGCTCAACAGCCTGCAGAATCCTGCCAACAAGAAGGAGATAATTTGCGATAACAAGCTGAAGGAGTTGTTTGAAGGGAAGGAAAAGGTCAACTTTCTGGAGATCGGGAAGTTGCTTTCACCCCATTTTGTGAAGGCTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SWIB

Protein Analysis

155

Amino Acids

16.29

Weight (kDa)

10.19

Isoelectric Point (pI)

40.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIB	PF02201	77 - 150	1.7e-28	SWIB/MDM2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31760 AT2G35605 AT3G03590 AT3G48600 AT3G48600
fragaria_vesca	FvH4_7g08300 FvH4_7g08300
malus_domestica	MD02G1231800.v1.1 MD07G1081700.v1.1
prunus_persica	Prupe.2G106900_v2.0.a1
pyrus_communis	pycom02g20020 pycom07g06500
rosa_chinensis	RchiOBHm_Chr1g0340731
rosa_laevigata	RLG00000029041
rosa_multiflora	Rmu_sc0001211.1_g000138
rosa_roxburghii	Rroxscaffold_4G00311370
rosa_samantha	Rh1BG144800 Rh1DG176500
rosa_wichuraiana	Rw1G014750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	269
AccII	CGCG	3 cut(s)	17, 185, 288
AciI	CCGC	7 cut(s)	15, 96, 111, 114, 117, 120, 273
AcoI	YGGCCR	1 cut(s)	57
AcuI	CTGAAG	1 cut(s)	401
AcyI	GRCGYC	2 cut(s)	177, 270
AfiI	CCNNNNNNNGG	3 cut(s)	21, 55, 254
AgsI	TTSAA	1 cut(s)	395
AluBI	AGCT	4 cut(s)	251, 261, 325, 379
AluI	AGCT	4 cut(s)	251, 261, 325, 379
Alw21I	GWGCWC	1 cut(s)	46
AlwNI	CAGNNNCTG	1 cut(s)	36
AoxI	GGCC	6 cut(s)	57, 135, 147, 153, 236, 294
ApeKI	GCWGC	2 cut(s)	36, 258
AspLEI	GCGC	2 cut(s)	272, 290
AspS9I	GGNCC	1 cut(s)	313
AsuHPI	GGTGA	1 cut(s)	432
AvaII	GGWCC	1 cut(s)	313
BanI	GGYRCC	1 cut(s)	269
Bbv12I	GWGCWC	1 cut(s)	46
BbvI	GCAGC	2 cut(s)	23, 270
BceAI	ACGGC	3 cut(s)	24, 83, 281
BcgI	CGANNNNNNTGC	4 cut(s)	111, 145, 247, 281
BfmI	CTRYAG	1 cut(s)	335
BfoI	RGCGCY	1 cut(s)	273
BisI	GCNGC	7 cut(s)	37, 111, 114, 117, 120, 259, 273
BlsI	GCNGC	7 cut(s)	38, 112, 115, 118, 121, 260, 274
Bme18I	GGWCC	1 cut(s)	313
BmgT120I	GGNCC	1 cut(s)	313
BmiI	GGNNCC	3 cut(s)	91, 271, 314
BpmI	CTGGAG	3 cut(s)	64, 231, 440
BsaHI	GRCGYC	2 cut(s)	177, 270
BsaJI	CCNNGG	5 cut(s)	138, 150, 156, 233, 291
Bsc4I	CCNNNNNNNGG	3 cut(s)	21, 55, 254
Bse118I	RCCGGY	2 cut(s)	55, 218
Bse1I	ACTGG	1 cut(s)	81
BseDI	CCNNGG	5 cut(s)	138, 150, 156, 233, 291
BseLI	CCNNNNNNNGG	3 cut(s)	21, 55, 254
BseMII	CTCAG	2 cut(s)	267, 450
BseNI	ACTGG	1 cut(s)	81
BseRI	GAGGAG	2 cut(s)	58, 61
BseXI	GCAGC	2 cut(s)	23, 270
Bsh1236I	CGCG	3 cut(s)	17, 185, 288
BshFI	GGCC	6 cut(s)	59, 137, 149, 155, 238, 296
BshNI	GGYRCC	1 cut(s)	269
BsiHKAI	GWGCWC	1 cut(s)	46
BsiSI	CCGG	3 cut(s)	56, 87, 219
BslFI	GGGAC	1 cut(s)	326
BslI	CCNNNNNNNGG	3 cut(s)	21, 55, 254
BsmFI	GGGAC	1 cut(s)	326
BsnI	GGCC	6 cut(s)	59, 137, 149, 155, 238, 296
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp143I	GATC	3 cut(s)	186, 240, 423
BspACI	CCGC	7 cut(s)	15, 96, 111, 114, 117, 120, 273
BspANI	GGCC	6 cut(s)	59, 137, 149, 155, 238, 296
BspCNI	CTCAG	2 cut(s)	268, 451
BspFNI	CGCG	3 cut(s)	17, 185, 288
BspLI	GGNNCC	3 cut(s)	91, 271, 314
BspMAI	CTGCAG	1 cut(s)	339
BspT107I	GGYRCC	1 cut(s)	269
BsrFI	RCCGGY	2 cut(s)	55, 218
BsrI	ACTGG	1 cut(s)	81
BssAI	RCCGGY	2 cut(s)	55, 218
BssECI	CCNNGG	5 cut(s)	138, 150, 156, 233, 291
BssMI	GATC	3 cut(s)	186, 240, 423
BssNI	GRCGYC	2 cut(s)	177, 270
BssT1I	CCWWGG	3 cut(s)	138, 150, 156
BstACI	GRCGYC	2 cut(s)	177, 270
BstC8I	GCNNGC	2 cut(s)	220, 335
BstDEI	CTNAG	2 cut(s)	276, 459
BstFNI	CGCG	3 cut(s)	17, 185, 288
BstH2I	RGCGCY	1 cut(s)	273
BstHHI	GCGC	2 cut(s)	272, 290
BstKTI	GATC	3 cut(s)	189, 243, 426
BstMBI	GATC	3 cut(s)	186, 240, 423
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 116, 119, 267
BstSFI	CTRYAG	1 cut(s)	335
BstUI	CGCG	3 cut(s)	17, 185, 288
BstV1I	GCAGC	2 cut(s)	23, 270
BsuRI	GGCC	6 cut(s)	59, 137, 149, 155, 238, 296
BtsIMutI	CAGTG	1 cut(s)	88
Cac8I	GCNNGC	2 cut(s)	220, 335
CaiI	CAGNNNCTG	1 cut(s)	36
CfoI	GCGC	2 cut(s)	272, 290
Cfr10I	RCCGGY	2 cut(s)	55, 218
Cfr13I	GGNCC	1 cut(s)	313
CseI	GACGC	2 cut(s)	185, 191
CviAII	CATG	1 cut(s)	211
DdeI	CTNAG	2 cut(s)	276, 459
DinI	GGCGCC	1 cut(s)	271
DpnI	GATC	3 cut(s)	188, 242, 425
DpnII	GATC	3 cut(s)	186, 240, 423
EaeI	YGGCCR	1 cut(s)	57
EciI	GGCGGA	1 cut(s)	85
Eco130I	CCWWGG	3 cut(s)	138, 150, 156
Eco47I	GGWCC	1 cut(s)	313
Eco57I	CTGAAG	1 cut(s)	401
EcoT14I	CCWWGG	3 cut(s)	138, 150, 156
EgeI	GGCGCC	1 cut(s)	271
EheI	GGCGCC	1 cut(s)	271
ErhI	CCWWGG	3 cut(s)	138, 150, 156
FaeI	CATG	1 cut(s)	214
FaiI	YATR	2 cut(s)	212, 227
FalI	AAGNNNNNCTT	2 cut(s)	398, 430
FaqI	GGGAC	1 cut(s)	326
FatI	CATG	1 cut(s)	210
Fnu4HI	GCNGC	7 cut(s)	37, 111, 114, 117, 120, 259, 273
Fsp4HI	GCNGC	7 cut(s)	37, 111, 114, 117, 120, 259, 273
GlaI	GCGC	2 cut(s)	271, 289
GluI	GCNGC	7 cut(s)	37, 111, 114, 117, 120, 259, 273
GsuI	CTGGAG	3 cut(s)	64, 231, 440
HaeII	RGCGCY	1 cut(s)	273
HaeIII	GGCC	6 cut(s)	59, 137, 149, 155, 238, 296
HapII	CCGG	3 cut(s)	56, 87, 219
HgaI	GACGC	2 cut(s)	185, 191
HhaI	GCGC	2 cut(s)	272, 290
Hin1I	GRCGYC	2 cut(s)	177, 270
Hin1II	CATG	1 cut(s)	214
Hin6I	GCGC	2 cut(s)	270, 288
HinP1I	GCGC	2 cut(s)	270, 288
HincII	GTYRAC	2 cut(s)	208, 412
HindII	GTYRAC	2 cut(s)	208, 412
HinfI	GANTC	2 cut(s)	278, 340
HpaII	CCGG	3 cut(s)	56, 87, 219
HphI	GGTGA	1 cut(s)	432
Hpy166II	GTNNAC	3 cut(s)	12, 208, 412
Hpy188I	TCNGA	1 cut(s)	32
Hpy188III	TCNNGA	2 cut(s)	419, 427
Hpy8I	GTNNAC	3 cut(s)	12, 208, 412
Hpy99I	CGWCG	2 cut(s)	10, 185
HpyAV	CCTTC	7 cut(s)	127, 139, 349, 376, 389, 394, 448
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	2 cut(s)	53, 337
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 116, 119, 267
HpyF3I	CTNAG	2 cut(s)	276, 459
HpySE526I	ACGT	1 cut(s)	204
Hsp92I	GRCGYC	2 cut(s)	177, 270
Hsp92II	CATG	1 cut(s)	214
HspAI	GCGC	2 cut(s)	270, 288
KasI	GGCGCC	1 cut(s)	269
KroI	GCCGGC	1 cut(s)	218
KroNI	GCCGGC	1 cut(s)	220
Kzo9I	GATC	3 cut(s)	186, 240, 423
LmnI	GCTCC	1 cut(s)	89
LpnPI	CCDG	9 cut(s)	69, 94, 100, 232, 261, 295, 347, 357, 404
Lsp1109I	GCAGC	2 cut(s)	23, 270
MaeII	ACGT	1 cut(s)	204
MalI	GATC	3 cut(s)	188, 242, 425
MboI	GATC	3 cut(s)	186, 240, 423
MhlI	GDGCHC	1 cut(s)	46
MluCI	AATT	1 cut(s)	363
Mly113I	GGCGCC	1 cut(s)	270
MlyI	GAGTC	1 cut(s)	287
MnlI	CCTC	9 cut(s)	26, 76, 79, 82, 88, 103, 228, 286, 292
MroNI	GCCGGC	1 cut(s)	218
MspA1I	CMGCKG	1 cut(s)	275
MspI	CCGG	3 cut(s)	56, 87, 219
MvnI	CGCG	3 cut(s)	17, 185, 288
MwoI	GCNNNNNNNGC	4 cut(s)	50, 116, 119, 267
NaeI	GCCGGC	1 cut(s)	220
NarI	GGCGCC	1 cut(s)	270
NdeII	GATC	3 cut(s)	186, 240, 423
NgoMIV	GCCGGC	1 cut(s)	218
NlaIII	CATG	1 cut(s)	214
NlaIV	GGNNCC	3 cut(s)	91, 271, 314
NmeAIII	GCCGAG	4 cut(s)	234, 246, 258, 316
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PdiI	GCCGGC	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	340
PkrI	GCNGC	7 cut(s)	38, 112, 115, 118, 121, 260, 274
PleI	GAGTC	1 cut(s)	286
PluTI	GGCGCC	1 cut(s)	273
PpsI	GAGTC	1 cut(s)	286
PspN4I	GGNNCC	3 cut(s)	91, 271, 314
PspPI	GGNCC	1 cut(s)	313
PstI	CTGCAG	1 cut(s)	339
PstNI	CAGNNNCTG	1 cut(s)	36
SatI	GCNGC	7 cut(s)	37, 111, 114, 117, 120, 259, 273
Sau3AI	GATC	3 cut(s)	186, 240, 423
Sau96I	GGNCC	1 cut(s)	313
SchI	GAGTC	1 cut(s)	287
SduI	GDGCHC	1 cut(s)	46
SetI	ASST	8 cut(s)	80, 108, 207, 253, 263, 327, 381, 411
SfcI	CTRYAG	1 cut(s)	335
SfoI	GGCGCC	1 cut(s)	271
SinI	GGWCC	1 cut(s)	313
Sse9I	AATT	1 cut(s)	363
SsiI	CCGC	7 cut(s)	15, 96, 111, 114, 117, 120, 273
SspDI	GGCGCC	1 cut(s)	269
StyI	CCWWGG	3 cut(s)	138, 150, 156
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	1 cut(s)	131
TasI	AATT	1 cut(s)	363
TauI	GCSGC	5 cut(s)	113, 116, 119, 122, 275
TfiI	GAWTC	1 cut(s)	340
TscAI	CASTG	1 cut(s)	88
TseI	GCWGC	2 cut(s)	36, 258
TspDTI	ATGAA	2 cut(s)	227, 242
TspRI	CASTG	1 cut(s)	88
VpaK11BI	GGWCC	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.