Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011758

Physical Location & Seq

Genomic Coordinates Reverse (-)

865122 .. 867008

Gene Structure 1887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G03590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGTCTTCCGTTGCAGCTATGGTTTTCAGAGGAGCTAGATCGCTTCTAGCTCCTGCTTCTCGAGCCACCTCTTCTTTGGTTTCAGCTGGATCCACTAAGAAACCCGCGGCGAAACCAAAGGCCAAGGCTAAGCCTAAGCCAAAGGCGAAATCAGACTCTCCGGCAAAGAAGACACCGAGGTCTACCGGAATCTTTAAGGTGACTCCTGTGTCTCCAGTTCTCGCTCAGTTCCTTGGTACCGGTGAAACATCACGTACCGACGCCATCAAGGGGATTTGGACCTACATCAAGTCCCACGATCTTCAGAACCCAGCTGACAAGAGGGAGATTTTCTGCGATGAGACACTGAAGCTAATCTTTGAAGGGAAAGACAAAGTTGGGTTTCTGGAGATTTCAAAACTCTTGTCCCCGCACTTTGTGAAGACTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SWIB

Protein Analysis

143

Amino Acids

15.31

Weight (kDa)

10.21

Isoelectric Point (pI)

33.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIB	PF02201	69 - 139	5.6e-29	SWIB/MDM2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31760 AT2G35605 AT3G03590 AT3G48600 AT3G48600
fragaria_vesca	FvH4_7g08300 FvH4_7g08300
malus_domestica	MD02G1231800.v1.1 MD07G1081700.v1.1
prunus_persica	Prupe.2G106900_v2.0.a1
pyrus_communis	pycom02g20020 pycom07g06500
rosa_chinensis	RchiOBHm_Chr1g0340731
rosa_laevigata	RLG00000029041
rosa_multiflora	Rmu_sc0001211.1_g000138
rosa_roxburghii	Rroxscaffold_4G00311370
rosa_samantha	Rh1BG144800 Rh1DG176500
rosa_wichuraiana	Rw1G014750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	178, 208
Acc65I	GGTACC	1 cut(s)	236
AccB1I	GGYRCC	1 cut(s)	236
AccI	GTMKAC	1 cut(s)	182
AccII	CGCG	1 cut(s)	107
AciI	CCGC	3 cut(s)	105, 107, 410
AclWI	GGATC	2 cut(s)	84, 97
AcuI	CTGAAG	2 cut(s)	287, 368
AcyI	GRCGYC	1 cut(s)	261
AdeI	CACNNNGTG	1 cut(s)	418
AfaI	GTAC	2 cut(s)	238, 256
AfiI	CCNNNNNNNGG	1 cut(s)	270
AgeI	ACCGGT	1 cut(s)	239
AgsI	TTSAA	2 cut(s)	362, 396
AluBI	AGCT	6 cut(s)	17, 35, 50, 86, 314, 352
AluI	AGCT	6 cut(s)	17, 35, 50, 86, 314, 352
Alw26I	GTCTC	2 cut(s)	216, 335
AlwI	GGATC	2 cut(s)	84, 97
Ama87I	CYCGRG	1 cut(s)	60
AoxI	GGCC	1 cut(s)	120
ApeKI	GCWGC	1 cut(s)	14
ArsI	GACNNNNNNTTYG	2 cut(s)	389, 421
AsiGI	ACCGGT	1 cut(s)	239
Asp718I	GGTACC	1 cut(s)	236
AspS9I	GGNCC	1 cut(s)	279
AsuHPI	GGTGA	2 cut(s)	211, 254
AvaI	CYCGRG	1 cut(s)	60
AvaII	GGWCC	1 cut(s)	279
BamHI	GGATCC	1 cut(s)	89
BanI	GGYRCC	1 cut(s)	236
BbsI	GAAGAC	2 cut(s)	176, 428
BbvI	GCAGC	1 cut(s)	26
BccI	CCATC	1 cut(s)	272
BcoDI	GTCTC	2 cut(s)	216, 335
BfaI	CTAG	2 cut(s)	36, 47
BisI	GCNGC	2 cut(s)	15, 108
BlpI	GCTNAGC	1 cut(s)	129
BlsI	GCNGC	2 cut(s)	16, 109
Bme18I	GGWCC	1 cut(s)	279
BmeT110I	CYCGRG	1 cut(s)	60
BmgT120I	GGNCC	1 cut(s)	279
BmiI	GGNNCC	2 cut(s)	91, 238
BpiI	GAAGAC	2 cut(s)	176, 428
BpmI	CTGGAG	2 cut(s)	198, 407
Bpu10I	CCTNAGC	1 cut(s)	135
Bpu1102I	GCTNAGC	1 cut(s)	129
BsaAI	YACGTR	1 cut(s)	254
BsaHI	GRCGYC	1 cut(s)	261
BsaJI	CCNNGG	4 cut(s)	105, 123, 176, 232
BsaWI	WCCGGW	2 cut(s)	185, 239
Bsc4I	CCNNNNNNNGG	1 cut(s)	270
Bse118I	RCCGGY	1 cut(s)	239
Bse1I	ACTGG	1 cut(s)	215
BseDI	CCNNGG	4 cut(s)	105, 123, 176, 232
BseLI	CCNNNNNNNGG	1 cut(s)	270
BseMII	CTCAG	1 cut(s)	239
BseNI	ACTGG	1 cut(s)	215
BseRI	GAGGAG	1 cut(s)	45
BseXI	GCAGC	1 cut(s)	26
BseYI	CCCAGC	1 cut(s)	310
Bsh1236I	CGCG	1 cut(s)	107
BshFI	GGCC	1 cut(s)	122
BshNI	GGYRCC	1 cut(s)	236
BshTI	ACCGGT	1 cut(s)	239
BsiHKCI	CYCGRG	1 cut(s)	60
BsiSI	CCGG	3 cut(s)	161, 186, 240
BslFI	GGGAC	2 cut(s)	277, 391
BslI	CCNNNNNNNGG	1 cut(s)	270
BsmAI	GTCTC	2 cut(s)	216, 335
BsmFI	GGGAC	2 cut(s)	277, 391
BsnI	GGCC	1 cut(s)	122
BsoBI	CYCGRG	1 cut(s)	60
Bsp143I	GATC	3 cut(s)	38, 89, 298
Bsp1720I	GCTNAGC	1 cut(s)	129
BspACI	CCGC	3 cut(s)	105, 107, 410
BspANI	GGCC	1 cut(s)	122
BspCNI	CTCAG	1 cut(s)	238
BspFNI	CGCG	1 cut(s)	107
BspLI	GGNNCC	2 cut(s)	91, 238
BspPI	GGATC	2 cut(s)	84, 97
BspT107I	GGYRCC	1 cut(s)	236
BsrFI	RCCGGY	1 cut(s)	239
BsrI	ACTGG	1 cut(s)	215
BssAI	RCCGGY	1 cut(s)	239
BssECI	CCNNGG	4 cut(s)	105, 123, 176, 232
BssMI	GATC	3 cut(s)	38, 89, 298
BssNI	GRCGYC	1 cut(s)	261
BssT1I	CCWWGG	2 cut(s)	123, 232
Bst6I	CTCTTC	1 cut(s)	76
BstACI	GRCGYC	1 cut(s)	261
BstBAI	YACGTR	1 cut(s)	254
BstDEI	CTNAG	4 cut(s)	96, 129, 135, 225
BstDSI	CCRYGG	1 cut(s)	105
BstFNI	CGCG	1 cut(s)	107
BstKTI	GATC	3 cut(s)	41, 92, 301
BstMAI	GTCTC	2 cut(s)	216, 335
BstMBI	GATC	3 cut(s)	38, 89, 298
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstUI	CGCG	1 cut(s)	107
BstV1I	GCAGC	1 cut(s)	26
BstV2I	GAAGAC	2 cut(s)	176, 428
BstX2I	RGATCY	1 cut(s)	89
BstYI	RGATCY	1 cut(s)	89
BsuRI	GGCC	1 cut(s)	122
BtgI	CCRYGG	1 cut(s)	105
BtgZI	GCGATG	1 cut(s)	351
BtsIMutI	CAGTG	1 cut(s)	344
Cfr10I	RCCGGY	1 cut(s)	239
Cfr13I	GGNCC	1 cut(s)	279
Cfr42I	CCGCGG	1 cut(s)	108
CseI	GACGC	1 cut(s)	269
Csp6I	GTAC	2 cut(s)	237, 255
CspAI	ACCGGT	1 cut(s)	239
CviQI	GTAC	2 cut(s)	237, 255
DdeI	CTNAG	4 cut(s)	96, 129, 135, 225
DpnI	GATC	3 cut(s)	40, 91, 300
DpnII	GATC	3 cut(s)	38, 89, 298
DraIII	CACNNNGTG	1 cut(s)	418
DrdI	GACNNNNNNGTC	2 cut(s)	178, 208
DseDI	GACNNNNNNGTC	2 cut(s)	178, 208
Eam1104I	CTCTTC	1 cut(s)	76
EarI	CTCTTC	1 cut(s)	76
Eco130I	CCWWGG	2 cut(s)	123, 232
Eco47I	GGWCC	1 cut(s)	279
Eco57I	CTGAAG	2 cut(s)	287, 368
Eco88I	CYCGRG	1 cut(s)	60
EcoT14I	CCWWGG	2 cut(s)	123, 232
ErhI	CCWWGG	2 cut(s)	123, 232
FaiI	YATR	1 cut(s)	20
FalI	AAGNNNNNCTT	2 cut(s)	341, 373
FaqI	GGGAC	2 cut(s)	277, 391
FauI	CCCGC	2 cut(s)	112, 417
FblI	GTMKAC	1 cut(s)	182
Fnu4HI	GCNGC	2 cut(s)	15, 108
Fsp4HI	GCNGC	2 cut(s)	15, 108
FspBI	CTAG	2 cut(s)	36, 47
GluI	GCNGC	2 cut(s)	15, 108
GsaI	CCCAGC	1 cut(s)	314
GsuI	CTGGAG	2 cut(s)	198, 407
HaeIII	GGCC	1 cut(s)	122
HapII	CCGG	3 cut(s)	161, 186, 240
HgaI	GACGC	1 cut(s)	269
Hin1I	GRCGYC	1 cut(s)	261
HinfI	GANTC	3 cut(s)	155, 189, 202
HpaII	CCGG	3 cut(s)	161, 186, 240
HphI	GGTGA	2 cut(s)	211, 254
Hpy166II	GTNNAC	1 cut(s)	183
Hpy188I	TCNGA	3 cut(s)	29, 154, 306
Hpy188III	TCNNGA	2 cut(s)	60, 386
Hpy8I	GTNNAC	1 cut(s)	183
Hpy99I	CGWCG	1 cut(s)	263
HpyAV	CCTTC	1 cut(s)	356
HpyCH4IV	ACGT	1 cut(s)	253
HpyCH4V	TGCA	1 cut(s)	14
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpyF3I	CTNAG	4 cut(s)	96, 129, 135, 225
HpySE526I	ACGT	1 cut(s)	253
Hsp92I	GRCGYC	1 cut(s)	261
KpnI	GGTACC	1 cut(s)	240
KspI	CCGCGG	1 cut(s)	108
Kzo9I	GATC	3 cut(s)	38, 89, 298
LmnI	GCTCC	2 cut(s)	32, 55
LpnPI	CCDG	9 cut(s)	66, 72, 174, 199, 219, 228, 253, 324, 371
Lsp1109I	GCAGC	1 cut(s)	26
MaeI	CTAG	2 cut(s)	36, 47
MaeII	ACGT	1 cut(s)	253
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	3 cut(s)	40, 91, 300
MboI	GATC	3 cut(s)	38, 89, 298
MboII	GAAGA	3 cut(s)	63, 181, 293
MflI	RGATCY	1 cut(s)	89
MlyI	GAGTC	2 cut(s)	149, 196
MnlI	CCTC	4 cut(s)	23, 79, 171, 315
MseI	TTAA	1 cut(s)	195
MspA1I	CMGCKG	3 cut(s)	86, 107, 314
MspI	CCGG	3 cut(s)	161, 186, 240
MvnI	CGCG	1 cut(s)	107
MwoI	GCNNNNNNNGC	1 cut(s)	62
NdeII	GATC	3 cut(s)	38, 89, 298
NlaIV	GGNNCC	2 cut(s)	91, 238
NmuCI	GTSAC	1 cut(s)	199
PaeR7I	CTCGAG	1 cut(s)	60
PfeI	GAWTC	1 cut(s)	189
PinAI	ACCGGT	1 cut(s)	239
PkrI	GCNGC	2 cut(s)	16, 109
PleI	GAGTC	2 cut(s)	149, 196
PpsI	GAGTC	2 cut(s)	149, 196
Ppu21I	YACGTR	1 cut(s)	254
PspFI	CCCAGC	1 cut(s)	310
PspN4I	GGNNCC	2 cut(s)	91, 238
PspPI	GGNCC	1 cut(s)	279
PsuI	RGATCY	1 cut(s)	89
PvuII	CAGCTG	2 cut(s)	86, 314
RsaI	GTAC	2 cut(s)	238, 256
RsaNI	GTAC	2 cut(s)	237, 255
SacII	CCGCGG	1 cut(s)	108
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	2 cut(s)	15, 108
Sau3AI	GATC	3 cut(s)	38, 89, 298
Sau96I	GGNCC	1 cut(s)	279
SchI	GAGTC	2 cut(s)	149, 196
Sfr274I	CTCGAG	1 cut(s)	60
Sfr303I	CCGCGG	1 cut(s)	108
SgrBI	CCGCGG	1 cut(s)	108
SinI	GGWCC	1 cut(s)	279
SlaI	CTCGAG	1 cut(s)	60
SmlI	CTYRAG	1 cut(s)	60
SmoI	CTYRAG	1 cut(s)	60
SsiI	CCGC	3 cut(s)	105, 107, 410
SspMI	CTAG	2 cut(s)	36, 47
StyI	CCWWGG	2 cut(s)	123, 232
TaiI	ACGT	1 cut(s)	256
TaqI	TCGA	1 cut(s)	61
TauI	GCSGC	1 cut(s)	110
TfiI	GAWTC	1 cut(s)	189
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TscAI	CASTG	1 cut(s)	351
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	1 cut(s)	14
Tsp45I	GTSAC	1 cut(s)	199
TspRI	CASTG	1 cut(s)	351
VpaK11BI	GGWCC	1 cut(s)	279
XcmI	CCANNNNNNNNNTGG	1 cut(s)	73
XhoI	CTCGAG	1 cut(s)	60
XmiI	GTMKAC	1 cut(s)	182
XspI	CTAG	2 cut(s)	36, 47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.