Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012296

Physical Location & Seq

Genomic Coordinates Reverse (-)

11689064 .. 11691588

Gene Structure 2525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G32400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGCTTGTAGAGGTTGTTTGGAGTGTTTGTTGAAGTTACTCAACTTTCTCCTGGCTGTTGCTGGACTTGGCATGATTGGTTATGGTATCTATTTATTCGTTGAGTACAAGAGAGTTACCGATAATTCTGTTACATTCGATTTGACTAATGGAGATCAAAGTTACGTTTCGTTTGGGAGGCCTATTCTTATGGCTGTGTCACTGTCTTCTAATATCTTTGACAATCTTCCCAAAGCGTGGTTCATATACTTGTTCATTGGTATTGGTGTGGCTCTCTTTGTTATTTCTTGCTGTGGCTGTGTTGGTACTTGTTCGAGGAGTGTCTGCTGCTTATCTTGCTACTCTCTTCTTCTGATCTTGTTGATCTTGGTGGAGCTTGGATTCGCAGCATTTATTTTCTTCGATAACAGCTGGAGAGATGAACTTCCTTCTGACAGGACTGGAAACTTCGATACGATATATAATTTCCTTAGAGAGAACTGGAAGATTGTAAGATGGGTAGCTCTAGGAGCAGTTGTTTTCGAGGCTTTACTCTTCTTGCTTGCCCTTATGGTCAGGGCAGCTAATACACCAGCAGAGTATGACAGTGATGATGAATATCTTGCTCCAAGGCAACAAATCAGGCAGCCATTCATCAACCGCCAAGCCGCCCCTGTCACTGGTGTCCCAGTTGCTCCTACTTTGGACCAACGCCCAAGCCGCAGTGACCCTTGGAGTGCACGTATGAGGGAAAAGTATGGGCTTGACACATCTGAGTTCACATACAATCCCTCAGAGTCACACCGGTTCCAGCAAATGCCAGCGCAACCAAACGAAGAAAAGGGCCGATGCACCATCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005911 GO:0008150 GO:0009506 GO:0009705 GO:0012505 GO:0016020 GO:0016032 GO:0019058 GO:0019079 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046786 GO:0051704 GO:0055044 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tetraspannin

Protein Analysis

280

Amino Acids

31.56

Weight (kDa)

5.33

Isoelectric Point (pI)

46.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tetraspanin	PF00335	8 - 138	2.4e-14	Tetraspanin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32400 AT1G32400 AT1G32400
fragaria_vesca	FvH4_5g21300
malus_domestica	MD06G1039300.v1.1 MD16G1270100.v1.1
prunus_persica	Prupe.5G044200_v2.0.a1 Prupe.5G044200_v2.0.a1 Prupe.5G044200_v2.0.a1
pyrus_communis	pycom06g03290 pycom16g23920
rosa_chinensis	RchiOBHm_Chr7g0208641
rosa_laevigata	RLG00000003206
rosa_roxburghii	Rroxscaffold_3G00250360
rosa_rugosa	Rorug07G0105100
rosa_samantha	Rh7AG240000 Rh7CG254800 Rh7DG245900
rosa_wichuraiana	Rw7G020350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	237
AciI	CCGC	3 cut(s)	640, 648, 700
AfaI	GTAC	2 cut(s)	107, 307
AfiI	CCNNNNNNNGG	2 cut(s)	237, 659
AgeI	ACCGGT	1 cut(s)	783
AgsI	TTSAA	1 cut(s)	34
AjnI	CCWGG	1 cut(s)	51
AjuI	GAANNNNNNNTTGG	2 cut(s)	224, 256
AluBI	AGCT	4 cut(s)	376, 411, 503, 563
AluI	AGCT	4 cut(s)	376, 411, 503, 563
Alw21I	GWGCWC	1 cut(s)	721
Alw44I	GTGCAC	1 cut(s)	717
AoxI	GGCC	2 cut(s)	179, 823
ApaLI	GTGCAC	1 cut(s)	717
ApeKI	GCWGC	4 cut(s)	327, 386, 560, 625
AsiGI	ACCGGT	1 cut(s)	783
AspLEI	GCGC	1 cut(s)	805
AspS9I	GGNCC	2 cut(s)	685, 823
AvaII	GGWCC	1 cut(s)	685
BaeGI	GKGCMC	1 cut(s)	721
BbsI	GAAGAC	1 cut(s)	198
Bbv12I	GWGCWC	1 cut(s)	721
BbvI	GCAGC	4 cut(s)	314, 398, 572, 637
BccI	CCATC	2 cut(s)	489, 842
BciT130I	CCWGG	1 cut(s)	53
BfaI	CTAG	1 cut(s)	506
BisI	GCNGC	6 cut(s)	328, 387, 561, 626, 648, 700
BlsI	GCNGC	6 cut(s)	329, 388, 562, 627, 649, 701
Bme1390I	CCNGG	1 cut(s)	53
Bme18I	GGWCC	1 cut(s)	685
BmgT120I	GGNCC	2 cut(s)	685, 823
BmiI	GGNNCC	1 cut(s)	788
BmrFI	CCNGG	1 cut(s)	53
BmrI	ACTGGG	1 cut(s)	662
BmsI	GCATC	1 cut(s)	818
BmuI	ACTGGG	1 cut(s)	662
BpiI	GAAGAC	1 cut(s)	198
BpmI	CTGGAG	1 cut(s)	433
BsaAI	YACGTR	1 cut(s)	722
BsaBI	GATNNNNATC	1 cut(s)	597
BsaJI	CCNNGG	2 cut(s)	608, 710
BsaWI	WCCGGW	1 cut(s)	783
BsaXI	ACNNNNNCTCC	6 cut(s)	14, 44, 501, 531, 706, 736
Bsc4I	CCNNNNNNNGG	2 cut(s)	237, 659
Bse118I	RCCGGY	1 cut(s)	783
Bse1I	ACTGG	4 cut(s)	445, 485, 664, 668
Bse8I	GATNNNNATC	1 cut(s)	597
BseBI	CCWGG	1 cut(s)	53
BseDI	CCNNGG	2 cut(s)	608, 710
BseJI	GATNNNNATC	1 cut(s)	597
BseLI	CCNNNNNNNGG	2 cut(s)	237, 659
BseMII	CTCAG	2 cut(s)	744, 786
BseNI	ACTGG	4 cut(s)	445, 485, 664, 668
BseRI	GAGGAG	1 cut(s)	331
BseSI	GKGCMC	1 cut(s)	721
BseXI	GCAGC	4 cut(s)	314, 398, 572, 637
BshFI	GGCC	2 cut(s)	181, 825
BshTI	ACCGGT	1 cut(s)	783
BsiHKAI	GWGCWC	1 cut(s)	721
BsiSI	CCGG	1 cut(s)	784
BslFI	GGGAC	1 cut(s)	650
BslI	CCNNNNNNNGG	2 cut(s)	237, 659
BsmFI	GGGAC	1 cut(s)	650
BsnI	GGCC	2 cut(s)	181, 825
Bsp1286I	GDGCHC	1 cut(s)	721
Bsp143I	GATC	3 cut(s)	154, 354, 363
BspACI	CCGC	3 cut(s)	640, 648, 700
BspANI	GGCC	2 cut(s)	181, 825
BspCNI	CTCAG	2 cut(s)	745, 785
BspLI	GGNNCC	1 cut(s)	788
BsrFI	RCCGGY	1 cut(s)	783
BsrI	ACTGG	4 cut(s)	445, 485, 664, 668
BssAI	RCCGGY	1 cut(s)	783
BssECI	CCNNGG	2 cut(s)	608, 710
BssMI	GATC	3 cut(s)	154, 354, 363
BssT1I	CCWWGG	2 cut(s)	608, 710
Bst2UI	CCWGG	1 cut(s)	53
Bst4CI	ACNGT	2 cut(s)	204, 587
Bst6I	CTCTTC	2 cut(s)	351, 539
BstBAI	YACGTR	1 cut(s)	722
BstC8I	GCNNGC	2 cut(s)	543, 801
BstDEI	CTNAG	3 cut(s)	470, 753, 772
BstHHI	GCGC	1 cut(s)	805
BstKTI	GATC	3 cut(s)	157, 357, 366
BstMBI	GATC	3 cut(s)	154, 354, 363
BstMWI	GCNNNNNNNGC	3 cut(s)	336, 509, 699
BstNI	CCWGG	1 cut(s)	53
BstSCI	CCNGG	1 cut(s)	51
BstSLI	GKGCMC	1 cut(s)	721
BstV1I	GCAGC	4 cut(s)	314, 398, 572, 637
BstV2I	GAAGAC	1 cut(s)	198
BsuRI	GGCC	2 cut(s)	181, 825
BtsI	GCAGTG	1 cut(s)	709
BtsIMutI	CAGTG	4 cut(s)	200, 592, 657, 709
Cac8I	GCNNGC	2 cut(s)	543, 801
CfoI	GCGC	1 cut(s)	805
Cfr10I	RCCGGY	1 cut(s)	783
Cfr13I	GGNCC	2 cut(s)	685, 823
Csp6I	GTAC	2 cut(s)	106, 306
CspAI	ACCGGT	1 cut(s)	783
CviAII	CATG	2 cut(s)	73, 838
CviQI	GTAC	2 cut(s)	106, 306
DdeI	CTNAG	3 cut(s)	470, 753, 772
DpnI	GATC	3 cut(s)	156, 356, 365
DpnII	GATC	3 cut(s)	154, 354, 363
Eam1104I	CTCTTC	2 cut(s)	351, 539
EarI	CTCTTC	2 cut(s)	351, 539
Eco130I	CCWWGG	2 cut(s)	608, 710
Eco147I	AGGCCT	1 cut(s)	181
Eco47I	GGWCC	1 cut(s)	685
EcoRII	CCWGG	1 cut(s)	51
EcoT14I	CCWWGG	2 cut(s)	608, 710
ErhI	CCWWGG	2 cut(s)	608, 710
FaeI	CATG	2 cut(s)	76, 841
FaqI	GGGAC	1 cut(s)	650
FatI	CATG	2 cut(s)	72, 837
Fnu4HI	GCNGC	6 cut(s)	328, 387, 561, 626, 648, 700
Fsp4HI	GCNGC	6 cut(s)	328, 387, 561, 626, 648, 700
FspBI	CTAG	1 cut(s)	506
GlaI	GCGC	1 cut(s)	804
GluI	GCNGC	6 cut(s)	328, 387, 561, 626, 648, 700
GsuI	CTGGAG	1 cut(s)	433
HaeIII	GGCC	2 cut(s)	181, 825
HapII	CCGG	1 cut(s)	784
HhaI	GCGC	1 cut(s)	805
Hin1II	CATG	2 cut(s)	76, 841
Hin6I	GCGC	1 cut(s)	803
HinP1I	GCGC	1 cut(s)	803
HinfI	GANTC	2 cut(s)	381, 776
HpaII	CCGG	1 cut(s)	784
Hpy166II	GTNNAC	2 cut(s)	719, 759
Hpy188I	TCNGA	4 cut(s)	354, 433, 754, 775
Hpy8I	GTNNAC	2 cut(s)	719, 759
HpyAV	CCTTC	1 cut(s)	438
HpyCH4III	ACNGT	2 cut(s)	204, 587
HpyCH4IV	ACGT	2 cut(s)	165, 721
HpyCH4V	TGCA	2 cut(s)	719, 831
HpyF10VI	GCNNNNNNNGC	3 cut(s)	336, 509, 699
HpyF3I	CTNAG	3 cut(s)	470, 753, 772
HpySE526I	ACGT	2 cut(s)	165, 721
Hsp92II	CATG	2 cut(s)	76, 841
HspAI	GCGC	1 cut(s)	803
Kzo9I	GATC	3 cut(s)	154, 354, 363
LmnI	GCTCC	4 cut(s)	373, 509, 610, 679
Lsp1109I	GCAGC	4 cut(s)	314, 398, 572, 637
LweI	GCATC	1 cut(s)	818
MaeI	CTAG	1 cut(s)	506
MaeII	ACGT	2 cut(s)	165, 721
MaeIII	GTNAC	8 cut(s)	36, 115, 130, 161, 198, 655, 704, 777
MalI	GATC	3 cut(s)	156, 356, 365
MboI	GATC	3 cut(s)	154, 354, 363
MboII	GAAGA	8 cut(s)	198, 218, 338, 341, 391, 496, 526, 827
MhlI	GDGCHC	1 cut(s)	721
MluCI	AATT	2 cut(s)	124, 463
MlyI	GAGTC	1 cut(s)	785
MnlI	CCTC	6 cut(s)	5, 171, 309, 517, 720, 781
MslI	CAYNNNNRTG	1 cut(s)	836
MspA1I	CMGCKG	1 cut(s)	411
MspI	CCGG	1 cut(s)	784
MspR9I	CCNGG	1 cut(s)	53
MvaI	CCWGG	1 cut(s)	53
MwoI	GCNNNNNNNGC	3 cut(s)	336, 509, 699
NdeII	GATC	3 cut(s)	154, 354, 363
NlaIII	CATG	2 cut(s)	76, 841
NlaIV	GGNNCC	1 cut(s)	788
NmuCI	GTSAC	4 cut(s)	198, 655, 704, 777
PceI	AGGCCT	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	381
PflMI	CCANNNNNTGG	1 cut(s)	237
PinAI	ACCGGT	1 cut(s)	783
PkrI	GCNGC	6 cut(s)	329, 388, 562, 627, 649, 701
PleI	GAGTC	1 cut(s)	784
PpsI	GAGTC	1 cut(s)	784
Ppu21I	YACGTR	1 cut(s)	722
Psp6I	CCWGG	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	51
PspN4I	GGNNCC	1 cut(s)	788
PspPI	GGNCC	2 cut(s)	685, 823
PvuII	CAGCTG	1 cut(s)	411
RsaI	GTAC	2 cut(s)	107, 307
RsaNI	GTAC	2 cut(s)	106, 306
RseI	CAYNNNNRTG	1 cut(s)	836
SatI	GCNGC	6 cut(s)	328, 387, 561, 626, 648, 700
Sau3AI	GATC	3 cut(s)	154, 354, 363
Sau96I	GGNCC	2 cut(s)	685, 823
SchI	GAGTC	1 cut(s)	785
ScrFI	CCNGG	1 cut(s)	53
SduI	GDGCHC	1 cut(s)	721
SetI	ASST	7 cut(s)	16, 168, 378, 413, 505, 565, 724
SfaNI	GCATC	1 cut(s)	818
SinI	GGWCC	1 cut(s)	685
SmiMI	CAYNNNNRTG	1 cut(s)	836
Sse9I	AATT	2 cut(s)	124, 463
SseBI	AGGCCT	1 cut(s)	181
SsiI	CCGC	3 cut(s)	640, 648, 700
SspMI	CTAG	1 cut(s)	506
StuI	AGGCCT	1 cut(s)	181
StyD4I	CCNGG	1 cut(s)	51
StyI	CCWWGG	2 cut(s)	608, 710
TaaI	ACNGT	2 cut(s)	204, 587
TaiI	ACGT	2 cut(s)	168, 724
TaqI	TCGA	5 cut(s)	138, 314, 402, 450, 522
TasI	AATT	2 cut(s)	124, 463
TatI	WGTACW	1 cut(s)	105
TauI	GCSGC	2 cut(s)	650, 702
TfiI	GAWTC	1 cut(s)	381
TscAI	CASTG	4 cut(s)	207, 592, 664, 709
TseFI	GTSAC	4 cut(s)	198, 655, 704, 777
TseI	GCWGC	4 cut(s)	327, 386, 560, 625
Tsp45I	GTSAC	4 cut(s)	198, 655, 704, 777
TspDTI	ATGAA	5 cut(s)	232, 244, 435, 609, 622
TspRI	CASTG	4 cut(s)	207, 592, 664, 709
Van91I	CCANNNNNTGG	1 cut(s)	237
VneI	GTGCAC	1 cut(s)	717
VpaK11BI	GGWCC	1 cut(s)	685
XspI	CTAG	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.