Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0012296

Physical Location & Seq

Genomic Coordinates Reverse (-)

45598024 .. 45602366

Gene Structure 4343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003206

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGCCTGCAGAGGGTGCTTGGAGTGCCTATTGAAGCTATTGAACTTTATATTGACCCTCGTTGGGTTGGCTATTGTGGGTTATGGGATCTACTTGCTGGTAGAATACTTGAAAGTAGCTGATGGTGCCAATGCTCACGGCGAAACTGATGCTCTGATACAGCTTGGCCGCCCTATGCTCACGGCTGTGTCTCTTTCTTCTAATTTTTTTGACAAATTGCCAAAAGCCTGGTTCATATACTTGTTTATTGGGGTTGGAGTCATTATATTTGTCATCTCTTGTTTCGGTTGCATCGGTATTGTAACACGGAATGGCTGCTGCTTGAGTTGTTATTCGGTGTTGTTGATCCTTTTGATCTTGGTAGAGCTGGCTGCTGCAGCCTTTATATTCTTTGACAAAAGCTGGCAAACCGAAATCCCGACGGATACAACTGGAGATTTTGATATGATATATGAGTTTCTGGACTCGCACTGGAATATTGTCAAATGGGTTGTTCTTGGAGCTGTTATCTTTGAGGCTCTAATGTTCTTGCTAGCCCTCGGAGTTAGAGCTGTAAATAGACCAGTGGAGTATGATAGTGATGAAGAGCCATTGATCGACAGGCCGCCACCAGTTCCAGCAACTGGTGTACCTGTTCCTGGGCCCAGTAAGCGTGCAATCAGAAATGATGCTTGGAGTGCACGCATGAGGGAAAAGTACGGGCTCGACACATCTTTGTATCCATATGACCCATCCGATTCAAGCAGGTTCCAGCAACCTCCAGCTCAGCCACAAGAAGAAAGGAGGCGCTGCATCATCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005911 GO:0008150 GO:0009506 GO:0009705 GO:0012505 GO:0016020 GO:0016032 GO:0019058 GO:0019079 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046786 GO:0051704 GO:0055044 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tetraspannin

Protein Analysis

268

Amino Acids

29.76

Weight (kDa)

5.02

Isoelectric Point (pI)

43.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tetraspanin	PF00335	8 - 135	2.1e-17	Tetraspanin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32400 AT1G32400 AT1G32400
fragaria_vesca	FvH4_5g21300
malus_domestica	MD06G1039300.v1.1 MD16G1270100.v1.1
prunus_persica	Prupe.5G044200_v2.0.a1 Prupe.5G044200_v2.0.a1 Prupe.5G044200_v2.0.a1
pyrus_communis	pycom06g03290 pycom16g23920
rosa_chinensis	RchiOBHm_Chr7g0208641
rosa_laevigata	RLG00000003206
rosa_roxburghii	Rroxscaffold_3G00250360
rosa_rugosa	Rorug07G0105100
rosa_samantha	Rh7AG240000 Rh7CG254800 Rh7DG245900
rosa_wichuraiana	Rw7G020350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	735
AccB1I	GGYRCC	1 cut(s)	125
AccB7I	CCANNNNNTGG	1 cut(s)	623
AciI	CCGC	2 cut(s)	169, 605
AclWI	GGATC	2 cut(s)	95, 340
AcoI	YGGCCR	1 cut(s)	166
AfaI	GTAC	2 cut(s)	630, 698
AfiI	CCNNNNNNNGG	4 cut(s)	12, 63, 623, 638
AgsI	TTSAA	4 cut(s)	34, 43, 112, 741
AjnI	CCWGG	2 cut(s)	227, 637
AjuI	GAANNNNNNNTTGG	2 cut(s)	655, 687
AleI	CACNNNNGTG	1 cut(s)	185
AluBI	AGCT	8 cut(s)	37, 119, 163, 367, 402, 503, 551, 764
AluI	AGCT	8 cut(s)	37, 119, 163, 367, 402, 503, 551, 764
Alw21I	GWGCWC	1 cut(s)	682
Alw26I	GTCTC	1 cut(s)	195
Alw44I	GTGCAC	1 cut(s)	678
AlwI	GGATC	2 cut(s)	95, 340
AlwNI	CAGNNNCTG	1 cut(s)	623
AoxI	GGCC	4 cut(s)	3, 166, 602, 641
ApaI	GGGCCC	1 cut(s)	645
ApaLI	GTGCAC	1 cut(s)	678
ApeKI	GCWGC	6 cut(s)	315, 318, 371, 374, 377, 789
AspLEI	GCGC	1 cut(s)	789
AspS9I	GGNCC	2 cut(s)	641, 642
AsuNHI	GCTAGC	1 cut(s)	532
BaeGI	GKGCMC	2 cut(s)	645, 682
BaeI	ACNNNNGTAYC	2 cut(s)	612, 645
BanI	GGYRCC	1 cut(s)	125
BanII	GRGCYC	2 cut(s)	645, 705
Bbv12I	GWGCWC	1 cut(s)	682
BbvI	GCAGC	6 cut(s)	302, 305, 358, 361, 389, 776
BccI	CCATC	2 cut(s)	116, 739
BceAI	ACGGC	2 cut(s)	154, 198
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BciT130I	CCWGG	2 cut(s)	229, 639
BciVI	GTATCC	2 cut(s)	418, 729
BcoDI	GTCTC	1 cut(s)	195
BfaI	CTAG	1 cut(s)	533
BfmI	CTRYAG	2 cut(s)	7, 375
BfoI	RGCGCY	1 cut(s)	790
BfuAI	ACCTGC	1 cut(s)	735
BfuI	GTATCC	2 cut(s)	418, 729
BisI	GCNGC	8 cut(s)	169, 316, 319, 372, 375, 378, 605, 790
BlpI	GCTNAGC	1 cut(s)	765
BlsI	GCNGC	8 cut(s)	170, 317, 320, 373, 376, 379, 606, 791
Bme1390I	CCNGG	2 cut(s)	229, 639
BmgT120I	GGNCC	2 cut(s)	641, 642
BmiI	GGNNCC	3 cut(s)	127, 643, 749
BmrFI	CCNGG	2 cut(s)	229, 639
BmrI	ACTGGG	1 cut(s)	639
BmsI	GCATC	3 cut(s)	139, 300, 658
BmtI	GCTAGC	1 cut(s)	536
BmuI	ACTGGG	1 cut(s)	639
BpmI	CTGGAG	2 cut(s)	453, 744
Bpu1102I	GCTNAGC	1 cut(s)	765
BpuEI	CTTGAG	1 cut(s)	343
BsaJI	CCNNGG	2 cut(s)	538, 638
Bsc4I	CCNNNNNNNGG	4 cut(s)	12, 63, 623, 638
Bse1I	ACTGG	6 cut(s)	436, 476, 563, 611, 628, 645
BseBI	CCWGG	2 cut(s)	229, 639
BseDI	CCNNGG	2 cut(s)	538, 638
BseGI	GGATG	1 cut(s)	731
BseLI	CCNNNNNNNGG	4 cut(s)	12, 63, 623, 638
BseMII	CTCAG	1 cut(s)	779
BseNI	ACTGG	6 cut(s)	436, 476, 563, 611, 628, 645
BseSI	GKGCMC	2 cut(s)	645, 682
BseXI	GCAGC	6 cut(s)	302, 305, 358, 361, 389, 776
BshFI	GGCC	4 cut(s)	5, 168, 604, 643
BshNI	GGYRCC	1 cut(s)	125
BsiHKAI	GWGCWC	1 cut(s)	682
BslI	CCNNNNNNNGG	4 cut(s)	12, 63, 623, 638
BsmAI	GTCTC	1 cut(s)	195
BsnI	GGCC	4 cut(s)	5, 168, 604, 643
Bsp120I	GGGCCC	1 cut(s)	641
Bsp1286I	GDGCHC	3 cut(s)	645, 682, 705
Bsp143I	GATC	4 cut(s)	87, 345, 354, 594
Bsp1720I	GCTNAGC	1 cut(s)	765
BspACI	CCGC	2 cut(s)	169, 605
BspANI	GGCC	4 cut(s)	5, 168, 604, 643
BspCNI	CTCAG	1 cut(s)	778
BspLI	GGNNCC	3 cut(s)	127, 643, 749
BspMAI	CTGCAG	2 cut(s)	11, 379
BspMI	ACCTGC	1 cut(s)	735
BspOI	GCTAGC	1 cut(s)	536
BspPI	GGATC	2 cut(s)	95, 340
BspQI	GCTCTTC	1 cut(s)	579
BspT107I	GGYRCC	1 cut(s)	125
BsrI	ACTGG	6 cut(s)	436, 476, 563, 611, 628, 645
BssECI	CCNNGG	2 cut(s)	538, 638
BssMI	GATC	4 cut(s)	87, 345, 354, 594
Bst2UI	CCWGG	2 cut(s)	229, 639
Bst6I	CTCTTC	1 cut(s)	579
BstAPI	GCANNNNNTGC	1 cut(s)	15
BstC8I	GCNNGC	6 cut(s)	7, 369, 404, 534, 654, 682
BstDEI	CTNAG	1 cut(s)	765
BstF5I	GGATG	1 cut(s)	731
BstH2I	RGCGCY	1 cut(s)	790
BstHHI	GCGC	1 cut(s)	789
BstKTI	GATC	4 cut(s)	90, 348, 357, 597
BstMAI	GTCTC	1 cut(s)	195
BstMBI	GATC	4 cut(s)	87, 345, 354, 594
BstMWI	GCNNNNNNNGC	6 cut(s)	15, 24, 125, 377, 649, 677
BstNI	CCWGG	2 cut(s)	229, 639
BstSCI	CCNGG	2 cut(s)	227, 637
BstSFI	CTRYAG	2 cut(s)	7, 375
BstSLI	GKGCMC	2 cut(s)	645, 682
BstV1I	GCAGC	6 cut(s)	302, 305, 358, 361, 389, 776
BstX2I	RGATCY	1 cut(s)	87
BstXI	CCANNNNNNTGG	1 cut(s)	228
BstYI	RGATCY	1 cut(s)	87
BsuI	GTATCC	2 cut(s)	418, 729
BsuRI	GGCC	4 cut(s)	5, 168, 604, 643
BtsCI	GGATG	1 cut(s)	731
BtsIMutI	CAGTG	2 cut(s)	469, 570
BveI	ACCTGC	1 cut(s)	735
Cac8I	GCNNGC	6 cut(s)	7, 369, 404, 534, 654, 682
CaiI	CAGNNNCTG	1 cut(s)	623
CfoI	GCGC	1 cut(s)	789
Cfr13I	GGNCC	2 cut(s)	641, 642
Csp6I	GTAC	2 cut(s)	629, 697
CviAII	CATG	2 cut(s)	685, 799
CviQI	GTAC	2 cut(s)	629, 697
DdeI	CTNAG	1 cut(s)	765
DpnI	GATC	4 cut(s)	89, 347, 356, 596
DpnII	GATC	4 cut(s)	87, 345, 354, 594
EaeI	YGGCCR	1 cut(s)	166
Eam1104I	CTCTTC	1 cut(s)	579
EarI	CTCTTC	1 cut(s)	579
Eco24I	GRGCYC	2 cut(s)	645, 705
EcoRII	CCWGG	2 cut(s)	227, 637
EcoT38I	GRGCYC	2 cut(s)	645, 705
FaeI	CATG	2 cut(s)	688, 802
FatI	CATG	2 cut(s)	684, 798
FauNDI	CATATG	1 cut(s)	724
Fnu4HI	GCNGC	8 cut(s)	169, 316, 319, 372, 375, 378, 605, 790
FokI	GGATG	1 cut(s)	718
FriOI	GRGCYC	2 cut(s)	645, 705
Fsp4HI	GCNGC	8 cut(s)	169, 316, 319, 372, 375, 378, 605, 790
FspBI	CTAG	1 cut(s)	533
GlaI	GCGC	1 cut(s)	788
GluI	GCNGC	8 cut(s)	169, 316, 319, 372, 375, 378, 605, 790
GsuI	CTGGAG	2 cut(s)	453, 744
HaeII	RGCGCY	1 cut(s)	790
HaeIII	GGCC	4 cut(s)	5, 168, 604, 643
HhaI	GCGC	1 cut(s)	789
Hin1II	CATG	2 cut(s)	688, 802
Hin6I	GCGC	1 cut(s)	787
HinP1I	GCGC	1 cut(s)	787
HinfI	GANTC	3 cut(s)	258, 464, 737
Hpy166II	GTNNAC	2 cut(s)	629, 680
Hpy188I	TCNGA	4 cut(s)	156, 542, 662, 736
Hpy188III	TCNNGA	2 cut(s)	418, 461
Hpy8I	GTNNAC	2 cut(s)	629, 680
Hpy99I	CGWCG	1 cut(s)	424
HpyCH4V	TGCA	6 cut(s)	9, 291, 377, 656, 680, 792
HpyF10VI	GCNNNNNNNGC	6 cut(s)	15, 24, 125, 377, 649, 677
HpyF3I	CTNAG	1 cut(s)	765
Hsp92II	CATG	2 cut(s)	688, 802
HspAI	GCGC	1 cut(s)	787
Kzo9I	GATC	4 cut(s)	87, 345, 354, 594
LguI	GCTCTTC	1 cut(s)	579
LmnI	GCTCC	1 cut(s)	500
Lsp1109I	GCAGC	6 cut(s)	302, 305, 358, 361, 389, 776
LweI	GCATC	3 cut(s)	139, 300, 658
MaeI	CTAG	1 cut(s)	533
MaeIII	GTNAC	1 cut(s)	301
MalI	GATC	4 cut(s)	89, 347, 356, 596
MboI	GATC	4 cut(s)	87, 345, 354, 594
MboII	GAAGA	3 cut(s)	189, 596, 788
MflI	RGATCY	1 cut(s)	87
MhlI	GDGCHC	3 cut(s)	645, 682, 705
MluCI	AATT	2 cut(s)	202, 215
MlyI	GAGTC	2 cut(s)	267, 458
MmeI	TCCRAC	1 cut(s)	235
MnlI	CCTC	7 cut(s)	5, 68, 508, 548, 681, 768, 777
MslI	CAYNNNNRTG	2 cut(s)	185, 797
MspR9I	CCNGG	2 cut(s)	229, 639
MvaI	CCWGG	2 cut(s)	229, 639
MwoI	GCNNNNNNNGC	6 cut(s)	15, 24, 125, 377, 649, 677
NdeI	CATATG	1 cut(s)	724
NdeII	GATC	4 cut(s)	87, 345, 354, 594
NheI	GCTAGC	1 cut(s)	532
NlaIII	CATG	2 cut(s)	688, 802
NlaIV	GGNNCC	3 cut(s)	127, 643, 749
OliI	CACNNNNGTG	1 cut(s)	185
PciSI	GCTCTTC	1 cut(s)	579
PfeI	GAWTC	1 cut(s)	737
PflMI	CCANNNNNTGG	1 cut(s)	623
PkrI	GCNGC	8 cut(s)	170, 317, 320, 373, 376, 379, 606, 791
PleI	GAGTC	2 cut(s)	266, 458
PpsI	GAGTC	2 cut(s)	266, 458
Psp6I	CCWGG	2 cut(s)	227, 637
PspGI	CCWGG	2 cut(s)	227, 637
PspN4I	GGNNCC	3 cut(s)	127, 643, 749
PspOMI	GGGCCC	1 cut(s)	641
PspPI	GGNCC	2 cut(s)	641, 642
PstI	CTGCAG	2 cut(s)	11, 379
PstNI	CAGNNNCTG	1 cut(s)	623
PsuI	RGATCY	1 cut(s)	87
RsaI	GTAC	2 cut(s)	630, 698
RsaNI	GTAC	2 cut(s)	629, 697
RseI	CAYNNNNRTG	2 cut(s)	185, 797
SapI	GCTCTTC	1 cut(s)	579
SatI	GCNGC	8 cut(s)	169, 316, 319, 372, 375, 378, 605, 790
Sau3AI	GATC	4 cut(s)	87, 345, 354, 594
Sau96I	GGNCC	2 cut(s)	641, 642
SchI	GAGTC	2 cut(s)	267, 458
ScrFI	CCNGG	2 cut(s)	229, 639
SduI	GDGCHC	3 cut(s)	645, 682, 705
SfaNI	GCATC	3 cut(s)	139, 300, 658
SfcI	CTRYAG	2 cut(s)	7, 375
SmiMI	CAYNNNNRTG	2 cut(s)	185, 797
SmlI	CTYRAG	1 cut(s)	322
SmoI	CTYRAG	1 cut(s)	322
Sse9I	AATT	2 cut(s)	202, 215
SsiI	CCGC	2 cut(s)	169, 605
SspI	AATATT	1 cut(s)	478
SspMI	CTAG	1 cut(s)	533
StyD4I	CCNGG	2 cut(s)	227, 637
TaqI	TCGA	2 cut(s)	597, 705
TasI	AATT	2 cut(s)	202, 215
TauI	GCSGC	2 cut(s)	171, 607
TfiI	GAWTC	1 cut(s)	737
TscAI	CASTG	2 cut(s)	476, 570
TseI	GCWGC	6 cut(s)	315, 318, 371, 374, 377, 789
TspDTI	ATGAA	2 cut(s)	223, 597
TspGWI	ACGGA	2 cut(s)	322, 437
TspRI	CASTG	2 cut(s)	476, 570
Van91I	CCANNNNNTGG	1 cut(s)	623
VneI	GTGCAC	1 cut(s)	678
XspI	CTAG	1 cut(s)	533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.