Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0012296

Physical Location & Seq

Genomic Coordinates Reverse (-)

4856033 .. 4864241

Gene Structure 8209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G044200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGCCTGCAGAGGGTGCTGGGAGTGCGTATTGAAGCTATTGAACTTTGTTCTGACCCTTGTGGGGCTGGCCATGGTGGGTTATGGGATCTACCTGCTGGTTGAATACCTGAAAGCTGCTGACACAGTTGCCATGTCTTCGCTTGTGGGTGACAATCAAGCTTTGATACAGCTCAGCCGACCTATGCTCATGACTGTGTCTCTTTCATCTAATATCGTGGATAATTTGCCAAAAGCTTGGTTCATCTACTTGTTTATTGGAATTGGAGCAATTATATTTGTCATCTCTTGTTTTGGTTGCGTGGCCGCCATGACACGGAATGGCTGCTGCTTGAGTTGTTACTCAGTTTTGCTGATCCTTTTGATATTGGTAGAGCTGGGGGGTGCAGCCTTTATATTCTTTGACAAAAGCTGGGAAGCTGAAATCCCAACAGATAAAAGTGGAGATTTTGAGATGATATATGCATTTCTGAAAGCTCACTGGGACATTGTTAGATGGGTTGCTCTTGGAGCCGTTGTCTTCGAGGCTCTACTTTTCTTGCTAGCTCTTGTGGTTAGGGCAGCAAACAGACCAGCAGAGTATGACAGTGATGATGAGCTCATTGCTCCAAGGCAACAAATTAGACAGCCATTGATCAATAACAGGCCAGCAGTTCCGGCAACTGGTGTACCTGTTGCTGGGGCGAGTGATCAACGACCGAACAGAAATGATGCTTGGAGTACACGCATGAGGGAAAAGTACGGGCTTGATACAGCTGAGTTTACATACAACCCATCTGAGTCAAACAGGTTCCAGCCGGTACCAGCTCAGCCACAAGAAGAAAGGAGCCGATGCAGCATCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005911 GO:0008150 GO:0009506 GO:0009705 GO:0012505 GO:0016020 GO:0016032 GO:0019058 GO:0019079 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046786 GO:0051704 GO:0055044 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tetraspannin

Protein Analysis

282

Amino Acids

31.18

Weight (kDa)

5.17

Isoelectric Point (pI)

39.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32400 AT1G32400 AT1G32400
fragaria_vesca	FvH4_5g21300
malus_domestica	MD06G1039300.v1.1 MD16G1270100.v1.1
prunus_persica	Prupe.5G044200_v2.0.a1 Prupe.5G044200_v2.0.a1 Prupe.5G044200_v2.0.a1
pyrus_communis	pycom06g03290 pycom16g23920
rosa_chinensis	RchiOBHm_Chr7g0208641
rosa_laevigata	RLG00000003206
rosa_roxburghii	Rroxscaffold_3G00250360
rosa_rugosa	Rorug07G0105100
rosa_samantha	Rh7AG240000 Rh7CG254800 Rh7DG245900
rosa_wichuraiana	Rw7G020350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	102
Acc65I	GGTACC	1 cut(s)	799
AccB1I	GGYRCC	1 cut(s)	799
AciI	CCGC	1 cut(s)	306
AclWI	GGATC	2 cut(s)	95, 349
AcoI	YGGCCR	2 cut(s)	69, 303
AfaI	GTAC	4 cut(s)	669, 721, 740, 801
AfiI	CCNNNNNNNGG	5 cut(s)	12, 63, 315, 662, 677
AgsI	TTSAA	3 cut(s)	34, 43, 104
AjuI	GAANNNNNNNTTGG	2 cut(s)	697, 729
Alw21I	GWGCWC	1 cut(s)	600
Alw26I	GTCTC	1 cut(s)	204
AlwI	GGATC	2 cut(s)	95, 349
AoxI	GGCC	4 cut(s)	3, 69, 303, 644
ApeKI	GCWGC	6 cut(s)	116, 324, 327, 386, 560, 834
Asp718I	GGTACC	1 cut(s)	799
AsuHPI	GGTGA	1 cut(s)	161
AsuNHI	GCTAGC	1 cut(s)	541
BaeI	ACNNNNGTAYC	2 cut(s)	651, 684
BalI	TGGCCA	1 cut(s)	71
BanI	GGYRCC	1 cut(s)	799
BanII	GRGCYC	1 cut(s)	600
BbsI	GAAGAC	2 cut(s)	129, 511
Bbv12I	GWGCWC	1 cut(s)	600
BbvI	GCAGC	5 cut(s)	103, 311, 314, 398, 572
BccI	CCATC	2 cut(s)	489, 781
BceAI	ACGGC	1 cut(s)	497
BclI	TGATCA	2 cut(s)	633, 688
BcoDI	GTCTC	1 cut(s)	204
BfaI	CTAG	1 cut(s)	542
BfmI	CTRYAG	1 cut(s)	7
BfuAI	ACCTGC	1 cut(s)	102
BisI	GCNGC	7 cut(s)	117, 306, 325, 328, 387, 561, 835
BlpI	GCTNAGC	2 cut(s)	173, 807
BlsI	GCNGC	7 cut(s)	118, 307, 326, 329, 388, 562, 836
BmiI	GGNNCC	4 cut(s)	511, 791, 801, 827
BmrI	ACTGGG	1 cut(s)	490
BmsI	GCATC	2 cut(s)	700, 821
BmtI	GCTAGC	1 cut(s)	545
BmuI	ACTGGG	1 cut(s)	490
BpiI	GAAGAC	2 cut(s)	129, 511
Bpu1102I	GCTNAGC	2 cut(s)	173, 807
BpuEI	CTTGAG	1 cut(s)	352
BsaJI	CCNNGG	2 cut(s)	72, 608
BsaXI	ACNNNNNCTCC	2 cut(s)	501, 531
Bsc4I	CCNNNNNNNGG	5 cut(s)	12, 63, 315, 662, 677
Bse118I	RCCGGY	1 cut(s)	796
Bse1I	ACTGG	2 cut(s)	485, 667
Bse3DI	GCAATG	1 cut(s)	600
BseDI	CCNNGG	2 cut(s)	72, 608
BseLI	CCNNNNNNNGG	5 cut(s)	12, 63, 315, 662, 677
BseMI	GCAATG	1 cut(s)	600
BseMII	CTCAG	5 cut(s)	187, 357, 747, 768, 821
BseNI	ACTGG	2 cut(s)	485, 667
BseXI	GCAGC	5 cut(s)	103, 311, 314, 398, 572
BseYI	CCCAGC	4 cut(s)	18, 376, 411, 677
BsgI	GTGCAG	1 cut(s)	405
Bsh1285I	CGRYCG	1 cut(s)	698
BshFI	GGCC	4 cut(s)	5, 71, 305, 646
BshNI	GGYRCC	1 cut(s)	799
BsiEI	CGRYCG	1 cut(s)	698
BsiHKAI	GWGCWC	1 cut(s)	600
BsiSI	CCGG	2 cut(s)	656, 797
BslFI	GGGAC	1 cut(s)	497
BslI	CCNNNNNNNGG	5 cut(s)	12, 63, 315, 662, 677
BsmAI	GTCTC	1 cut(s)	204
BsmFI	GGGAC	1 cut(s)	497
BsnI	GGCC	4 cut(s)	5, 71, 305, 646
Bsp1286I	GDGCHC	1 cut(s)	600
Bsp143I	GATC	4 cut(s)	87, 354, 633, 688
Bsp1720I	GCTNAGC	2 cut(s)	173, 807
Bsp19I	CCATGG	1 cut(s)	72
BspACI	CCGC	1 cut(s)	306
BspANI	GGCC	4 cut(s)	5, 71, 305, 646
BspCNI	CTCAG	5 cut(s)	186, 356, 748, 769, 820
BspHI	TCATGA	1 cut(s)	189
BspLI	GGNNCC	4 cut(s)	511, 791, 801, 827
BspMAI	CTGCAG	1 cut(s)	11
BspMI	ACCTGC	1 cut(s)	102
BspOI	GCTAGC	1 cut(s)	545
BspPI	GGATC	2 cut(s)	95, 349
BspT107I	GGYRCC	1 cut(s)	799
BsrDI	GCAATG	1 cut(s)	600
BsrFI	RCCGGY	1 cut(s)	796
BsrI	ACTGG	2 cut(s)	485, 667
BssAI	RCCGGY	1 cut(s)	796
BssECI	CCNNGG	2 cut(s)	72, 608
BssMI	GATC	4 cut(s)	87, 354, 633, 688
BssT1I	CCWWGG	2 cut(s)	72, 608
Bst4CI	ACNGT	3 cut(s)	127, 196, 587
BstAPI	GCANNNNNTGC	1 cut(s)	15
BstC8I	GCNNGC	4 cut(s)	7, 69, 543, 648
BstDEI	CTNAG	5 cut(s)	173, 343, 756, 777, 807
BstDSI	CCRYGG	1 cut(s)	72
BstKTI	GATC	4 cut(s)	90, 357, 636, 691
BstMAI	GTCTC	1 cut(s)	204
BstMBI	GATC	4 cut(s)	87, 354, 633, 688
BstMCI	CGRYCG	1 cut(s)	698
BstMWI	GCNNNNNNNGC	5 cut(s)	15, 24, 509, 656, 834
BstSFI	CTRYAG	1 cut(s)	7
BstV1I	GCAGC	5 cut(s)	103, 311, 314, 398, 572
BstV2I	GAAGAC	2 cut(s)	129, 511
BstX2I	RGATCY	1 cut(s)	87
BstXI	CCANNNNNNTGG	1 cut(s)	237
BstYI	RGATCY	1 cut(s)	87
BsuRI	GGCC	4 cut(s)	5, 71, 305, 646
BtgI	CCRYGG	1 cut(s)	72
BtsIMutI	CAGTG	2 cut(s)	478, 592
BveI	ACCTGC	1 cut(s)	102
Cac8I	GCNNGC	4 cut(s)	7, 69, 543, 648
CciI	TCATGA	1 cut(s)	189
Cfr10I	RCCGGY	1 cut(s)	796
Csp6I	GTAC	4 cut(s)	668, 720, 739, 800
CviAII	CATG	6 cut(s)	73, 133, 190, 310, 727, 841
CviQI	GTAC	4 cut(s)	668, 720, 739, 800
DdeI	CTNAG	5 cut(s)	173, 343, 756, 777, 807
DpnI	GATC	4 cut(s)	89, 356, 635, 690
DpnII	GATC	4 cut(s)	87, 354, 633, 688
EaeI	YGGCCR	2 cut(s)	69, 303
Ecl136II	GAGCTC	1 cut(s)	598
Eco130I	CCWWGG	2 cut(s)	72, 608
Eco24I	GRGCYC	1 cut(s)	600
Eco53kI	GAGCTC	1 cut(s)	598
EcoICRI	GAGCTC	1 cut(s)	598
EcoT14I	CCWWGG	2 cut(s)	72, 608
EcoT22I	ATGCAT	1 cut(s)	466
EcoT38I	GRGCYC	1 cut(s)	600
ErhI	CCWWGG	2 cut(s)	72, 608
FaeI	CATG	6 cut(s)	76, 136, 193, 313, 730, 844
FaqI	GGGAC	1 cut(s)	497
FatI	CATG	6 cut(s)	72, 132, 189, 309, 726, 840
FbaI	TGATCA	2 cut(s)	633, 688
Fnu4HI	GCNGC	7 cut(s)	117, 306, 325, 328, 387, 561, 835
FriOI	GRGCYC	1 cut(s)	600
Fsp4HI	GCNGC	7 cut(s)	117, 306, 325, 328, 387, 561, 835
FspBI	CTAG	1 cut(s)	542
GluI	GCNGC	7 cut(s)	117, 306, 325, 328, 387, 561, 835
GsaI	CCCAGC	4 cut(s)	22, 380, 415, 681
HaeIII	GGCC	4 cut(s)	5, 71, 305, 646
HapII	CCGG	2 cut(s)	656, 797
Hin1II	CATG	6 cut(s)	76, 136, 193, 313, 730, 844
HindIII	AAGCTT	2 cut(s)	159, 234
HinfI	GANTC	1 cut(s)	779
HpaII	CCGG	2 cut(s)	656, 797
HphI	GGTGA	1 cut(s)	161
Hpy166II	GTNNAC	3 cut(s)	668, 722, 762
Hpy188I	TCNGA	3 cut(s)	54, 471, 778
Hpy188III	TCNNGA	1 cut(s)	190
Hpy8I	GTNNAC	3 cut(s)	668, 722, 762
HpyCH4III	ACNGT	3 cut(s)	127, 196, 587
HpyCH4V	TGCA	4 cut(s)	9, 386, 464, 834
HpyF10VI	GCNNNNNNNGC	5 cut(s)	15, 24, 509, 656, 834
HpyF3I	CTNAG	5 cut(s)	173, 343, 756, 777, 807
Hsp92II	CATG	6 cut(s)	76, 136, 193, 313, 730, 844
KpnI	GGTACC	1 cut(s)	803
Ksp22I	TGATCA	2 cut(s)	633, 688
Kzo9I	GATC	4 cut(s)	87, 354, 633, 688
LmnI	GCTCC	4 cut(s)	266, 509, 610, 825
Lsp1109I	GCAGC	5 cut(s)	103, 311, 314, 398, 572
LweI	GCATC	2 cut(s)	700, 821
MaeI	CTAG	1 cut(s)	542
MaeIII	GTNAC	2 cut(s)	149, 338
MalI	GATC	4 cut(s)	89, 356, 635, 690
MboI	GATC	4 cut(s)	87, 354, 633, 688
MboII	GAAGA	3 cut(s)	129, 511, 830
MflI	RGATCY	1 cut(s)	87
MhlI	GDGCHC	1 cut(s)	600
MlsI	TGGCCA	1 cut(s)	71
MluCI	AATT	4 cut(s)	223, 261, 270, 618
MluNI	TGGCCA	1 cut(s)	71
MlyI	GAGTC	1 cut(s)	788
MnlI	CCTC	3 cut(s)	5, 517, 723
Mox20I	TGGCCA	1 cut(s)	71
Mph1103I	ATGCAT	1 cut(s)	466
MscI	TGGCCA	1 cut(s)	71
MslI	CAYNNNNRTG	1 cut(s)	194
Msp20I	TGGCCA	1 cut(s)	71
MspA1I	CMGCKG	1 cut(s)	755
MspI	CCGG	2 cut(s)	656, 797
MwoI	GCNNNNNNNGC	5 cut(s)	15, 24, 509, 656, 834
NcoI	CCATGG	1 cut(s)	72
NdeII	GATC	4 cut(s)	87, 354, 633, 688
NheI	GCTAGC	1 cut(s)	541
NlaIII	CATG	6 cut(s)	76, 136, 193, 313, 730, 844
NlaIV	GGNNCC	4 cut(s)	511, 791, 801, 827
NmuCI	GTSAC	1 cut(s)	149
NsiI	ATGCAT	1 cut(s)	466
PagI	TCATGA	1 cut(s)	189
PflFI	GACNNNGTC	1 cut(s)	196
PkrI	GCNGC	7 cut(s)	118, 307, 326, 329, 388, 562, 836
PleI	GAGTC	1 cut(s)	787
PpsI	GAGTC	1 cut(s)	787
Psp124BI	GAGCTC	1 cut(s)	600
PspFI	CCCAGC	4 cut(s)	18, 376, 411, 677
PspN4I	GGNNCC	4 cut(s)	511, 791, 801, 827
PstI	CTGCAG	1 cut(s)	11
PsuI	RGATCY	1 cut(s)	87
PsyI	GACNNNGTC	1 cut(s)	196
PvuII	CAGCTG	1 cut(s)	755
RsaI	GTAC	4 cut(s)	669, 721, 740, 801
RsaNI	GTAC	4 cut(s)	668, 720, 739, 800
RseI	CAYNNNNRTG	1 cut(s)	194
SacI	GAGCTC	1 cut(s)	600
SatI	GCNGC	7 cut(s)	117, 306, 325, 328, 387, 561, 835
Sau3AI	GATC	4 cut(s)	87, 354, 633, 688
SchI	GAGTC	1 cut(s)	788
SduI	GDGCHC	1 cut(s)	600
SfaNI	GCATC	2 cut(s)	700, 821
SfcI	CTRYAG	1 cut(s)	7
SmiMI	CAYNNNNRTG	1 cut(s)	194
SmlI	CTYRAG	1 cut(s)	331
SmoI	CTYRAG	1 cut(s)	331
Sse9I	AATT	4 cut(s)	223, 261, 270, 618
SsiI	CCGC	1 cut(s)	306
SspMI	CTAG	1 cut(s)	542
SstI	GAGCTC	1 cut(s)	600
StyI	CCWWGG	2 cut(s)	72, 608
TaaI	ACNGT	3 cut(s)	127, 196, 587
TaqI	TCGA	1 cut(s)	522
TaqII	GACCGA	1 cut(s)	712
TasI	AATT	4 cut(s)	223, 261, 270, 618
TatI	WGTACW	1 cut(s)	719
TauI	GCSGC	1 cut(s)	308
TscAI	CASTG	2 cut(s)	485, 592
TseFI	GTSAC	1 cut(s)	149
TseI	GCWGC	6 cut(s)	116, 324, 327, 386, 560, 834
Tsp45I	GTSAC	1 cut(s)	149
TspDTI	ATGAA	2 cut(s)	195, 232
TspGWI	ACGGA	1 cut(s)	331
TspRI	CASTG	2 cut(s)	485, 592
Tth111I	GACNNNGTC	1 cut(s)	196
XspI	CTAG	1 cut(s)	542
Zsp2I	ATGCAT	1 cut(s)	466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.