Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0012296

Physical Location & Seq

Genomic Coordinates Forward (+)

34956543 .. 34969566

Gene Structure 13024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1270100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGCCTGCAGAGGGTGCTTGGAGTGCTTATTGAAGCTATTGAACTTTGTCTTGACCCTTGTGGGGCTGGCCATGGTGGGCTATGGGATCTACTTGCTTGTGGAATACTTGAGAGCTGCGGACACAACTGTAATGTCTTCGCCTGTGGGCGACGTTCATGATTTGGTACAGCTGAGCCGGCCTATGCTCATGACTGTGTCTCTTTCAGATAATATCTTGGATAATTTGCCGAAAGCTTGGTTCATATACTTGTTTATTGGAATTGGAGCGATTATATTTGTCATCTCTTGTTTTGGTTGCGTGGGTGCTATGACACGGAATGGCTGCTGCTTGAGTTGTTATTCGGTCCTGGTGATCCTTTTGATCTTGGTAGAGCTGGGAGCTGCCGCCTTTATATTCTTTGACAAAAGCTGGGAAGATGAAATCCCAATGGATTCAAGTGGAGATTTTGAGATGATATATGCATTTCTGAAAGCTCACTGGAACATTGTGAGATGGGTTGCTCTTGGAGCTGTTGTCTTCGAGGCTCTACTTTTCTTGCTAGCTCTTGTGGTTAGGGCAGCGAATAGACCAGCAGAGTATGACAGTGATGATGAGCTCATTGCTCCAAGGCAACAAATTAGGCAGCCATTGATCAGCAACCGGCCAGCTGTTCCAGCAACTGGTGTACCTGTTGCTGGGGCTCTTGATCAGAGAACACCAAACAGAAATGATGCTTGGAGTACACGCATGAGGGAAAAGTACGGACTTGATACAGCTGAGTTTACATATAACCCATCAGAGTCACACAGATTCCAGCAAGTTGCAGCTCAACCACAAGAAGAAAGGAGCCGATGCATTGTCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005911 GO:0008150 GO:0009506 GO:0009705 GO:0012505 GO:0016020 GO:0016032 GO:0019058 GO:0019079 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046786 GO:0051704 GO:0055044 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tetraspannin

Protein Analysis

283

Amino Acids

31.39

Weight (kDa)

5.04

Isoelectric Point (pI)

44.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tetraspanin	PF00335	8 - 138	3.9e-16	Tetraspanin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32400 AT1G32400 AT1G32400
fragaria_vesca	FvH4_5g21300
malus_domestica	MD06G1039300.v1.1 MD16G1270100.v1.1
prunus_persica	Prupe.5G044200_v2.0.a1 Prupe.5G044200_v2.0.a1 Prupe.5G044200_v2.0.a1
pyrus_communis	pycom06g03290 pycom16g23920
rosa_chinensis	RchiOBHm_Chr7g0208641
rosa_laevigata	RLG00000003206
rosa_roxburghii	Rroxscaffold_3G00250360
rosa_rugosa	Rorug07G0105100
rosa_samantha	Rh7AG240000 Rh7CG254800 Rh7DG245900
rosa_wichuraiana	Rw7G020350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	662
AciI	CCGC	2 cut(s)	119, 387
AclWI	GGATC	2 cut(s)	95, 349
AcoI	YGGCCR	2 cut(s)	69, 644
AfaI	GTAC	4 cut(s)	168, 669, 724, 743
AfiI	CCNNNNNNNGG	4 cut(s)	12, 63, 662, 677
AgsI	TTSAA	3 cut(s)	34, 43, 438
AjnI	CCWGG	1 cut(s)	348
AjuI	GAANNNNNNNTTGG	2 cut(s)	700, 732
Alw21I	GWGCWC	1 cut(s)	600
Alw26I	GTCTC	1 cut(s)	204
AlwI	GGATC	2 cut(s)	95, 349
AlwNI	CAGNNNCTG	1 cut(s)	662
AoxI	GGCC	4 cut(s)	3, 69, 179, 644
ApeKI	GCWGC	7 cut(s)	116, 324, 327, 383, 560, 625, 806
AspS9I	GGNCC	1 cut(s)	346
AsuHPI	GGTGA	1 cut(s)	364
AsuNHI	GCTAGC	1 cut(s)	541
AvaII	GGWCC	1 cut(s)	346
BaeI	ACNNNNGTAYC	2 cut(s)	651, 684
BalI	TGGCCA	1 cut(s)	71
BanII	GRGCYC	2 cut(s)	600, 685
BbsI	GAAGAC	2 cut(s)	129, 511
Bbv12I	GWGCWC	1 cut(s)	600
BbvI	GCAGC	7 cut(s)	103, 311, 314, 370, 572, 637, 818
BccI	CCATC	2 cut(s)	489, 784
BciT130I	CCWGG	1 cut(s)	350
BclI	TGATCA	2 cut(s)	633, 688
BcoDI	GTCTC	1 cut(s)	204
BfaI	CTAG	1 cut(s)	542
BfmI	CTRYAG	1 cut(s)	7
BisI	GCNGC	8 cut(s)	117, 325, 328, 384, 387, 561, 626, 807
BlpI	GCTNAGC	1 cut(s)	173
BlsI	GCNGC	8 cut(s)	118, 326, 329, 385, 388, 562, 627, 808
Bme1390I	CCNGG	1 cut(s)	350
Bme18I	GGWCC	1 cut(s)	346
BmgT120I	GGNCC	1 cut(s)	346
BmiI	GGNNCC	1 cut(s)	830
BmrFI	CCNGG	1 cut(s)	350
BmsI	GCATC	2 cut(s)	703, 824
BmtI	GCTAGC	1 cut(s)	545
BpiI	GAAGAC	2 cut(s)	129, 511
Bpu1102I	GCTNAGC	1 cut(s)	173
BpuEI	CTTGAG	2 cut(s)	130, 352
BsaJI	CCNNGG	2 cut(s)	72, 608
BsaXI	ACNNNNNCTCC	2 cut(s)	501, 531
Bsc4I	CCNNNNNNNGG	4 cut(s)	12, 63, 662, 677
Bse118I	RCCGGY	2 cut(s)	177, 642
Bse1I	ACTGG	2 cut(s)	485, 667
Bse3DI	GCAATG	1 cut(s)	600
BseBI	CCWGG	1 cut(s)	350
BseDI	CCNNGG	2 cut(s)	72, 608
BseLI	CCNNNNNNNGG	4 cut(s)	12, 63, 662, 677
BseMI	GCAATG	1 cut(s)	600
BseMII	CTCAG	2 cut(s)	164, 750
BseNI	ACTGG	2 cut(s)	485, 667
BseXI	GCAGC	7 cut(s)	103, 311, 314, 370, 572, 637, 818
BseYI	CCCAGC	3 cut(s)	376, 411, 677
BshFI	GGCC	4 cut(s)	5, 71, 181, 646
BsiHKAI	GWGCWC	1 cut(s)	600
BsiSI	CCGG	2 cut(s)	178, 643
BslI	CCNNNNNNNGG	4 cut(s)	12, 63, 662, 677
BsmAI	GTCTC	1 cut(s)	204
BsnI	GGCC	4 cut(s)	5, 71, 181, 646
Bsp1286I	GDGCHC	2 cut(s)	600, 685
Bsp143I	GATC	5 cut(s)	87, 354, 363, 633, 688
Bsp1720I	GCTNAGC	1 cut(s)	173
Bsp19I	CCATGG	1 cut(s)	72
BspACI	CCGC	2 cut(s)	119, 387
BspANI	GGCC	4 cut(s)	5, 71, 181, 646
BspCNI	CTCAG	2 cut(s)	165, 751
BspHI	TCATGA	2 cut(s)	157, 189
BspLI	GGNNCC	1 cut(s)	830
BspMAI	CTGCAG	1 cut(s)	11
BspOI	GCTAGC	1 cut(s)	545
BspPI	GGATC	2 cut(s)	95, 349
BsrDI	GCAATG	1 cut(s)	600
BsrFI	RCCGGY	2 cut(s)	177, 642
BsrI	ACTGG	2 cut(s)	485, 667
BssAI	RCCGGY	2 cut(s)	177, 642
BssECI	CCNNGG	2 cut(s)	72, 608
BssMI	GATC	5 cut(s)	87, 354, 363, 633, 688
BssT1I	CCWWGG	2 cut(s)	72, 608
Bst2UI	CCWGG	1 cut(s)	350
Bst4CI	ACNGT	3 cut(s)	130, 196, 587
BstAPI	GCANNNNNTGC	1 cut(s)	15
BstC8I	GCNNGC	5 cut(s)	7, 69, 179, 543, 648
BstDEI	CTNAG	2 cut(s)	173, 759
BstDSI	CCRYGG	1 cut(s)	72
BstKTI	GATC	5 cut(s)	90, 357, 366, 636, 691
BstMAI	GTCTC	1 cut(s)	204
BstMBI	GATC	5 cut(s)	87, 354, 363, 633, 688
BstMWI	GCNNNNNNNGC	5 cut(s)	15, 24, 178, 509, 656
BstNI	CCWGG	1 cut(s)	350
BstSCI	CCNGG	1 cut(s)	348
BstSFI	CTRYAG	1 cut(s)	7
BstV1I	GCAGC	7 cut(s)	103, 311, 314, 370, 572, 637, 818
BstV2I	GAAGAC	2 cut(s)	129, 511
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
BsuRI	GGCC	4 cut(s)	5, 71, 181, 646
BtgI	CCRYGG	1 cut(s)	72
BtsIMutI	CAGTG	2 cut(s)	478, 592
Cac8I	GCNNGC	5 cut(s)	7, 69, 179, 543, 648
CaiI	CAGNNNCTG	1 cut(s)	662
CciI	TCATGA	2 cut(s)	157, 189
Cfr10I	RCCGGY	2 cut(s)	177, 642
Cfr13I	GGNCC	1 cut(s)	346
Csp6I	GTAC	4 cut(s)	167, 668, 723, 742
CviAII	CATG	5 cut(s)	73, 158, 190, 730, 844
CviQI	GTAC	4 cut(s)	167, 668, 723, 742
DdeI	CTNAG	2 cut(s)	173, 759
DpnI	GATC	5 cut(s)	89, 356, 365, 635, 690
DpnII	GATC	5 cut(s)	87, 354, 363, 633, 688
EaeI	YGGCCR	2 cut(s)	69, 644
Ecl136II	GAGCTC	1 cut(s)	598
Eco130I	CCWWGG	2 cut(s)	72, 608
Eco24I	GRGCYC	2 cut(s)	600, 685
Eco47I	GGWCC	1 cut(s)	346
Eco53kI	GAGCTC	1 cut(s)	598
EcoICRI	GAGCTC	1 cut(s)	598
EcoRII	CCWGG	1 cut(s)	348
EcoT14I	CCWWGG	2 cut(s)	72, 608
EcoT22I	ATGCAT	2 cut(s)	466, 839
EcoT38I	GRGCYC	2 cut(s)	600, 685
ErhI	CCWWGG	2 cut(s)	72, 608
FaeI	CATG	5 cut(s)	76, 161, 193, 733, 847
FatI	CATG	5 cut(s)	72, 157, 189, 729, 843
FbaI	TGATCA	2 cut(s)	633, 688
Fnu4HI	GCNGC	8 cut(s)	117, 325, 328, 384, 387, 561, 626, 807
FriOI	GRGCYC	2 cut(s)	600, 685
Fsp4HI	GCNGC	8 cut(s)	117, 325, 328, 384, 387, 561, 626, 807
FspBI	CTAG	1 cut(s)	542
GluI	GCNGC	8 cut(s)	117, 325, 328, 384, 387, 561, 626, 807
GsaI	CCCAGC	3 cut(s)	380, 415, 681
HaeIII	GGCC	4 cut(s)	5, 71, 181, 646
HapII	CCGG	2 cut(s)	178, 643
Hin1II	CATG	5 cut(s)	76, 161, 193, 733, 847
HindIII	AAGCTT	1 cut(s)	234
HinfI	GANTC	3 cut(s)	434, 782, 792
HpaII	CCGG	2 cut(s)	178, 643
HphI	GGTGA	1 cut(s)	364
Hpy166II	GTNNAC	3 cut(s)	668, 725, 765
Hpy188I	TCNGA	4 cut(s)	208, 471, 693, 781
Hpy188III	TCNNGA	4 cut(s)	52, 158, 190, 686
Hpy8I	GTNNAC	3 cut(s)	668, 725, 765
Hpy99I	CGWCG	1 cut(s)	155
HpyCH4III	ACNGT	3 cut(s)	130, 196, 587
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	4 cut(s)	9, 464, 806, 837
HpyF10VI	GCNNNNNNNGC	5 cut(s)	15, 24, 178, 509, 656
HpyF3I	CTNAG	2 cut(s)	173, 759
HpySE526I	ACGT	1 cut(s)	153
Hsp92II	CATG	5 cut(s)	76, 161, 193, 733, 847
KroI	GCCGGC	1 cut(s)	177
KroNI	GCCGGC	1 cut(s)	179
Ksp22I	TGATCA	2 cut(s)	633, 688
Kzo9I	GATC	5 cut(s)	87, 354, 363, 633, 688
LmnI	GCTCC	5 cut(s)	266, 380, 509, 610, 828
Lsp1109I	GCAGC	7 cut(s)	103, 311, 314, 370, 572, 637, 818
LweI	GCATC	2 cut(s)	703, 824
MaeI	CTAG	1 cut(s)	542
MaeII	ACGT	1 cut(s)	153
MaeIII	GTNAC	1 cut(s)	783
MalI	GATC	5 cut(s)	89, 356, 365, 635, 690
MboI	GATC	5 cut(s)	87, 354, 363, 633, 688
MboII	GAAGA	4 cut(s)	129, 428, 511, 833
MflI	RGATCY	1 cut(s)	87
MhlI	GDGCHC	2 cut(s)	600, 685
MlsI	TGGCCA	1 cut(s)	71
MluCI	AATT	3 cut(s)	223, 261, 618
MluNI	TGGCCA	1 cut(s)	71
MlyI	GAGTC	1 cut(s)	791
MnlI	CCTC	3 cut(s)	5, 517, 726
Mox20I	TGGCCA	1 cut(s)	71
Mph1103I	ATGCAT	2 cut(s)	466, 839
MroNI	GCCGGC	1 cut(s)	177
MscI	TGGCCA	1 cut(s)	71
MslI	CAYNNNNRTG	2 cut(s)	194, 842
Msp20I	TGGCCA	1 cut(s)	71
MspA1I	CMGCKG	3 cut(s)	172, 650, 758
MspI	CCGG	2 cut(s)	178, 643
MspR9I	CCNGG	1 cut(s)	350
MvaI	CCWGG	1 cut(s)	350
MwoI	GCNNNNNNNGC	5 cut(s)	15, 24, 178, 509, 656
NaeI	GCCGGC	1 cut(s)	179
NcoI	CCATGG	1 cut(s)	72
NdeII	GATC	5 cut(s)	87, 354, 363, 633, 688
NgoMIV	GCCGGC	1 cut(s)	177
NheI	GCTAGC	1 cut(s)	541
NlaIII	CATG	5 cut(s)	76, 161, 193, 733, 847
NlaIV	GGNNCC	1 cut(s)	830
NmuCI	GTSAC	1 cut(s)	783
NsiI	ATGCAT	2 cut(s)	466, 839
PagI	TCATGA	2 cut(s)	157, 189
PdiI	GCCGGC	1 cut(s)	179
PfeI	GAWTC	2 cut(s)	434, 792
PflFI	GACNNNGTC	1 cut(s)	196
PflMI	CCANNNNNTGG	1 cut(s)	662
PkrI	GCNGC	8 cut(s)	118, 326, 329, 385, 388, 562, 627, 808
PleI	GAGTC	1 cut(s)	790
PpsI	GAGTC	1 cut(s)	790
Psp124BI	GAGCTC	1 cut(s)	600
Psp6I	CCWGG	1 cut(s)	348
PspFI	CCCAGC	3 cut(s)	376, 411, 677
PspGI	CCWGG	1 cut(s)	348
PspN4I	GGNNCC	1 cut(s)	830
PspPI	GGNCC	1 cut(s)	346
PstI	CTGCAG	1 cut(s)	11
PstNI	CAGNNNCTG	1 cut(s)	662
PsuI	RGATCY	1 cut(s)	87
PsyI	GACNNNGTC	1 cut(s)	196
PvuII	CAGCTG	3 cut(s)	172, 650, 758
RsaI	GTAC	4 cut(s)	168, 669, 724, 743
RsaNI	GTAC	4 cut(s)	167, 668, 723, 742
RseI	CAYNNNNRTG	2 cut(s)	194, 842
SacI	GAGCTC	1 cut(s)	600
SatI	GCNGC	8 cut(s)	117, 325, 328, 384, 387, 561, 626, 807
Sau3AI	GATC	5 cut(s)	87, 354, 363, 633, 688
Sau96I	GGNCC	1 cut(s)	346
SchI	GAGTC	1 cut(s)	791
ScrFI	CCNGG	1 cut(s)	350
SduI	GDGCHC	2 cut(s)	600, 685
SfaNI	GCATC	2 cut(s)	703, 824
SfcI	CTRYAG	1 cut(s)	7
SinI	GGWCC	1 cut(s)	346
SmiMI	CAYNNNNRTG	2 cut(s)	194, 842
SmlI	CTYRAG	2 cut(s)	109, 331
SmoI	CTYRAG	2 cut(s)	109, 331
Sse9I	AATT	3 cut(s)	223, 261, 618
SsiI	CCGC	2 cut(s)	119, 387
SspMI	CTAG	1 cut(s)	542
SstI	GAGCTC	1 cut(s)	600
StyD4I	CCNGG	1 cut(s)	348
StyI	CCWWGG	2 cut(s)	72, 608
TaaI	ACNGT	3 cut(s)	130, 196, 587
TaiI	ACGT	1 cut(s)	156
TaqI	TCGA	1 cut(s)	522
TaqII	GACCGA	1 cut(s)	334
TasI	AATT	3 cut(s)	223, 261, 618
TatI	WGTACW	1 cut(s)	722
TauI	GCSGC	1 cut(s)	389
TfiI	GAWTC	2 cut(s)	434, 792
TscAI	CASTG	2 cut(s)	485, 592
TseFI	GTSAC	1 cut(s)	783
TseI	GCWGC	7 cut(s)	116, 324, 327, 383, 560, 625, 806
Tsp45I	GTSAC	1 cut(s)	783
TspDTI	ATGAA	3 cut(s)	146, 232, 435
TspGWI	ACGGA	2 cut(s)	331, 759
TspRI	CASTG	2 cut(s)	485, 592
Tth111I	GACNNNGTC	1 cut(s)	196
Van91I	CCANNNNNTGG	1 cut(s)	662
VpaK11BI	GGWCC	1 cut(s)	346
XspI	CTAG	1 cut(s)	542
Zsp2I	ATGCAT	2 cut(s)	466, 839

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.