Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0012296

Physical Location & Seq

Genomic Coordinates Forward (+)

23499027 .. 23503239

Gene Structure 4213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG240000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGCCTGCAGAGGGTGCTTGGAGTGCCTATTGAAGCTATTGAACTTTATATTGACCCTCGTTGGGTTGGCCATTGTGGGTTATGGGATCTACTTGCTGGTAGAATACATGAAAGTAGCCGACGGTGCCAATATGCATTCACCTGTGGGTGAAACTGATGCTCTGATACAGCTTGGCCGCCCTATGCTCACGGCTGTGTCTCTTTCTTCTAATTTTTTTGACAATTTGCCAAAAGCCTGGTTCATATACTTGTTTATTGGGGTTGGAGTCATTATATTTGTCATCTCTTGTTTCGGTTGCATCGGTATTGTAACACGGAATGGCTGCTGCTTGAGTTGTTATTCGGTGTTGTTGATCCTTTTGATCTTGGTAGAGCTGGCTGCTGCAGCCTTTATATTCTTTGACAAAAGCTGGCAAACCGAAATCCCGACGGATGCAACTGGAGATTTTGATATGATATATGAGTTTCTGGAAGCGCACTGGAATATTGTCAAATGGGTTGTTCTTGGAGCTGTTATCTTTGAGGCTCTAATGTTCTTGCTAGCCCTTGGAGTTAGAGCTGTAAATAGACCAGTGGAGTATGATAGTGATGAAGAGCCATTGATCAACAGGCCGCCACCAGTTCCAGCAACCGGTGTACCTGTTGCTGGGGCCAGTAGTCAGCGTCCAATTAGAAATGATGCTTGGAGTACACGCATGAGGGAAAAGTACGGGCTCGACACATCTTTGTATCCATATGACCCATCCGATTCAAGTAGGTTCCAGCAACCTCCAGCTCAGCCACAAGAAGAAAGGAGGCGCTGCATCATCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005911 GO:0008150 GO:0009506 GO:0009705 GO:0012505 GO:0016020 GO:0016032 GO:0019058 GO:0019079 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046786 GO:0051704 GO:0055044 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tetraspannin

Protein Analysis

271

Amino Acids

30.16

Weight (kDa)

4.92

Isoelectric Point (pI)

49.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tetraspanin	PF00335	8 - 138	2.3e-17	Tetraspanin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32400 AT1G32400 AT1G32400
fragaria_vesca	FvH4_5g21300
malus_domestica	MD06G1039300.v1.1 MD16G1270100.v1.1
prunus_persica	Prupe.5G044200_v2.0.a1 Prupe.5G044200_v2.0.a1 Prupe.5G044200_v2.0.a1
pyrus_communis	pycom06g03290 pycom16g23920
rosa_chinensis	RchiOBHm_Chr7g0208641
rosa_laevigata	RLG00000003206
rosa_roxburghii	Rroxscaffold_3G00250360
rosa_rugosa	Rorug07G0105100
rosa_samantha	Rh7AG240000 Rh7CG254800 Rh7DG245900
rosa_wichuraiana	Rw7G020350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	125
AciI	CCGC	2 cut(s)	178, 614
AclWI	GGATC	2 cut(s)	95, 349
AcoI	YGGCCR	2 cut(s)	69, 175
AfaI	GTAC	3 cut(s)	639, 691, 710
AfiI	CCNNNNNNNGG	4 cut(s)	12, 63, 632, 647
AgeI	ACCGGT	1 cut(s)	632
AgsI	TTSAA	3 cut(s)	34, 43, 753
AjnI	CCWGG	1 cut(s)	236
AjuI	GAANNNNNNNTTGG	2 cut(s)	667, 699
AleI	CACNNNNGTG	1 cut(s)	194
AluBI	AGCT	7 cut(s)	37, 172, 376, 411, 512, 560, 776
AluI	AGCT	7 cut(s)	37, 172, 376, 411, 512, 560, 776
Alw26I	GTCTC	1 cut(s)	204
AlwI	GGATC	2 cut(s)	95, 349
AoxI	GGCC	5 cut(s)	3, 69, 175, 611, 651
ApeKI	GCWGC	6 cut(s)	324, 327, 380, 383, 386, 801
AsiGI	ACCGGT	1 cut(s)	632
AspLEI	GCGC	2 cut(s)	478, 801
AspS9I	GGNCC	1 cut(s)	651
AsuHPI	GGTGA	2 cut(s)	132, 161
AsuNHI	GCTAGC	1 cut(s)	541
BaeI	ACNNNNGTAYC	2 cut(s)	621, 654
BalI	TGGCCA	1 cut(s)	71
BanI	GGYRCC	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	717
BbvI	GCAGC	6 cut(s)	311, 314, 367, 370, 398, 788
BccI	CCATC	1 cut(s)	751
BceAI	ACGGC	1 cut(s)	207
BciT130I	CCWGG	1 cut(s)	238
BciVI	GTATCC	1 cut(s)	741
BclI	TGATCA	1 cut(s)	603
BcoDI	GTCTC	1 cut(s)	204
BfaI	CTAG	1 cut(s)	542
BfmI	CTRYAG	2 cut(s)	7, 384
BfoI	RGCGCY	1 cut(s)	802
BfuI	GTATCC	1 cut(s)	741
BisI	GCNGC	8 cut(s)	178, 325, 328, 381, 384, 387, 614, 802
BlpI	GCTNAGC	1 cut(s)	777
BlsI	GCNGC	8 cut(s)	179, 326, 329, 382, 385, 388, 615, 803
Bme1390I	CCNGG	1 cut(s)	238
BmgT120I	GGNCC	1 cut(s)	651
BmiI	GGNNCC	3 cut(s)	127, 652, 761
BmrFI	CCNGG	1 cut(s)	238
BmsI	GCATC	4 cut(s)	148, 309, 424, 670
BmtI	GCTAGC	1 cut(s)	545
BpmI	CTGGAG	2 cut(s)	462, 756
Bpu1102I	GCTNAGC	1 cut(s)	777
BpuEI	CTTGAG	1 cut(s)	352
BsaJI	CCNNGG	1 cut(s)	547
BsaWI	WCCGGW	1 cut(s)	632
Bsc4I	CCNNNNNNNGG	4 cut(s)	12, 63, 632, 647
Bse118I	RCCGGY	1 cut(s)	632
Bse1I	ACTGG	5 cut(s)	445, 485, 572, 620, 654
BseBI	CCWGG	1 cut(s)	238
BseDI	CCNNGG	1 cut(s)	547
BseGI	GGATG	2 cut(s)	439, 743
BseLI	CCNNNNNNNGG	4 cut(s)	12, 63, 632, 647
BseMII	CTCAG	1 cut(s)	791
BseNI	ACTGG	5 cut(s)	445, 485, 572, 620, 654
BseXI	GCAGC	6 cut(s)	311, 314, 367, 370, 398, 788
BseYI	CCCAGC	1 cut(s)	647
BshFI	GGCC	5 cut(s)	5, 71, 177, 613, 653
BshNI	GGYRCC	1 cut(s)	125
BshTI	ACCGGT	1 cut(s)	632
BsiSI	CCGG	1 cut(s)	633
BslI	CCNNNNNNNGG	4 cut(s)	12, 63, 632, 647
BsmAI	GTCTC	1 cut(s)	204
BsmI	GAATGC	1 cut(s)	136
BsnI	GGCC	5 cut(s)	5, 71, 177, 613, 653
Bsp1286I	GDGCHC	1 cut(s)	717
Bsp143I	GATC	4 cut(s)	87, 354, 363, 603
Bsp1720I	GCTNAGC	1 cut(s)	777
BspACI	CCGC	2 cut(s)	178, 614
BspANI	GGCC	5 cut(s)	5, 71, 177, 613, 653
BspCNI	CTCAG	1 cut(s)	790
BspLI	GGNNCC	3 cut(s)	127, 652, 761
BspMAI	CTGCAG	2 cut(s)	11, 388
BspOI	GCTAGC	1 cut(s)	545
BspPI	GGATC	2 cut(s)	95, 349
BspQI	GCTCTTC	1 cut(s)	588
BspT107I	GGYRCC	1 cut(s)	125
BsrFI	RCCGGY	1 cut(s)	632
BsrI	ACTGG	5 cut(s)	445, 485, 572, 620, 654
BssAI	RCCGGY	1 cut(s)	632
BssECI	CCNNGG	1 cut(s)	547
BssMI	GATC	4 cut(s)	87, 354, 363, 603
BssT1I	CCWWGG	1 cut(s)	547
Bst2UI	CCWGG	1 cut(s)	238
Bst4CI	ACNGT	1 cut(s)	125
Bst6I	CTCTTC	1 cut(s)	588
BstAPI	GCANNNNNTGC	1 cut(s)	15
BstC8I	GCNNGC	4 cut(s)	7, 378, 413, 543
BstDEI	CTNAG	1 cut(s)	777
BstF5I	GGATG	2 cut(s)	439, 743
BstH2I	RGCGCY	1 cut(s)	802
BstHHI	GCGC	2 cut(s)	478, 801
BstKTI	GATC	4 cut(s)	90, 357, 366, 606
BstMAI	GTCTC	1 cut(s)	204
BstMBI	GATC	4 cut(s)	87, 354, 363, 603
BstMWI	GCNNNNNNNGC	4 cut(s)	15, 24, 125, 386
BstNI	CCWGG	1 cut(s)	238
BstSCI	CCNGG	1 cut(s)	236
BstSFI	CTRYAG	2 cut(s)	7, 384
BstV1I	GCAGC	6 cut(s)	311, 314, 367, 370, 398, 788
BstX2I	RGATCY	1 cut(s)	87
BstXI	CCANNNNNNTGG	1 cut(s)	237
BstYI	RGATCY	1 cut(s)	87
BsuI	GTATCC	1 cut(s)	741
BsuRI	GGCC	5 cut(s)	5, 71, 177, 613, 653
BtsCI	GGATG	2 cut(s)	439, 743
BtsIMutI	CAGTG	2 cut(s)	478, 579
Cac8I	GCNNGC	4 cut(s)	7, 378, 413, 543
CfoI	GCGC	2 cut(s)	478, 801
Cfr10I	RCCGGY	1 cut(s)	632
Cfr13I	GGNCC	1 cut(s)	651
CseI	GACGC	1 cut(s)	653
Csp6I	GTAC	3 cut(s)	638, 690, 709
CspAI	ACCGGT	1 cut(s)	632
CviAII	CATG	3 cut(s)	109, 697, 811
CviQI	GTAC	3 cut(s)	638, 690, 709
DdeI	CTNAG	1 cut(s)	777
DpnI	GATC	4 cut(s)	89, 356, 365, 605
DpnII	GATC	4 cut(s)	87, 354, 363, 603
EaeI	YGGCCR	2 cut(s)	69, 175
Eam1104I	CTCTTC	1 cut(s)	588
EarI	CTCTTC	1 cut(s)	588
Eco130I	CCWWGG	1 cut(s)	547
Eco24I	GRGCYC	1 cut(s)	717
EcoRII	CCWGG	1 cut(s)	236
EcoT14I	CCWWGG	1 cut(s)	547
EcoT22I	ATGCAT	1 cut(s)	138
EcoT38I	GRGCYC	1 cut(s)	717
ErhI	CCWWGG	1 cut(s)	547
FaeI	CATG	3 cut(s)	112, 700, 814
FatI	CATG	3 cut(s)	108, 696, 810
FauNDI	CATATG	1 cut(s)	736
FbaI	TGATCA	1 cut(s)	603
Fnu4HI	GCNGC	8 cut(s)	178, 325, 328, 381, 384, 387, 614, 802
FokI	GGATG	2 cut(s)	446, 730
FriOI	GRGCYC	1 cut(s)	717
Fsp4HI	GCNGC	8 cut(s)	178, 325, 328, 381, 384, 387, 614, 802
FspBI	CTAG	1 cut(s)	542
GlaI	GCGC	2 cut(s)	477, 800
GluI	GCNGC	8 cut(s)	178, 325, 328, 381, 384, 387, 614, 802
GsaI	CCCAGC	1 cut(s)	651
GsuI	CTGGAG	2 cut(s)	462, 756
HaeII	RGCGCY	1 cut(s)	802
HaeIII	GGCC	5 cut(s)	5, 71, 177, 613, 653
HapII	CCGG	1 cut(s)	633
HgaI	GACGC	1 cut(s)	653
HhaI	GCGC	2 cut(s)	478, 801
Hin1II	CATG	3 cut(s)	112, 700, 814
Hin6I	GCGC	2 cut(s)	476, 799
HinP1I	GCGC	2 cut(s)	476, 799
HinfI	GANTC	2 cut(s)	267, 749
HpaII	CCGG	1 cut(s)	633
HphI	GGTGA	2 cut(s)	132, 161
Hpy166II	GTNNAC	2 cut(s)	638, 692
Hpy188I	TCNGA	2 cut(s)	165, 748
Hpy188III	TCNNGA	2 cut(s)	427, 470
Hpy8I	GTNNAC	2 cut(s)	638, 692
Hpy99I	CGWCG	2 cut(s)	125, 433
HpyCH4III	ACNGT	1 cut(s)	125
HpyCH4V	TGCA	6 cut(s)	9, 136, 300, 386, 437, 804
HpyF10VI	GCNNNNNNNGC	4 cut(s)	15, 24, 125, 386
HpyF3I	CTNAG	1 cut(s)	777
Hsp92II	CATG	3 cut(s)	112, 700, 814
HspAI	GCGC	2 cut(s)	476, 799
Ksp22I	TGATCA	1 cut(s)	603
Kzo9I	GATC	4 cut(s)	87, 354, 363, 603
LguI	GCTCTTC	1 cut(s)	588
LmnI	GCTCC	1 cut(s)	509
Lsp1109I	GCAGC	6 cut(s)	311, 314, 367, 370, 398, 788
LweI	GCATC	4 cut(s)	148, 309, 424, 670
MaeI	CTAG	1 cut(s)	542
MaeIII	GTNAC	1 cut(s)	310
MalI	GATC	4 cut(s)	89, 356, 365, 605
MboI	GATC	4 cut(s)	87, 354, 363, 603
MboII	GAAGA	3 cut(s)	198, 605, 800
MflI	RGATCY	1 cut(s)	87
MhlI	GDGCHC	1 cut(s)	717
MlsI	TGGCCA	1 cut(s)	71
MluCI	AATT	3 cut(s)	211, 223, 669
MluNI	TGGCCA	1 cut(s)	71
MlyI	GAGTC	1 cut(s)	276
MmeI	TCCRAC	1 cut(s)	244
MnlI	CCTC	6 cut(s)	5, 68, 517, 693, 780, 789
Mox20I	TGGCCA	1 cut(s)	71
Mph1103I	ATGCAT	1 cut(s)	138
MscI	TGGCCA	1 cut(s)	71
MslI	CAYNNNNRTG	2 cut(s)	194, 809
Msp20I	TGGCCA	1 cut(s)	71
MspI	CCGG	1 cut(s)	633
MspR9I	CCNGG	1 cut(s)	238
Mva1269I	GAATGC	1 cut(s)	136
MvaI	CCWGG	1 cut(s)	238
MwoI	GCNNNNNNNGC	4 cut(s)	15, 24, 125, 386
NdeI	CATATG	1 cut(s)	736
NdeII	GATC	4 cut(s)	87, 354, 363, 603
NheI	GCTAGC	1 cut(s)	541
NlaIII	CATG	3 cut(s)	112, 700, 814
NlaIV	GGNNCC	3 cut(s)	127, 652, 761
NsiI	ATGCAT	1 cut(s)	138
OliI	CACNNNNGTG	1 cut(s)	194
PciSI	GCTCTTC	1 cut(s)	588
PctI	GAATGC	1 cut(s)	136
PfeI	GAWTC	1 cut(s)	749
PinAI	ACCGGT	1 cut(s)	632
PkrI	GCNGC	8 cut(s)	179, 326, 329, 382, 385, 388, 615, 803
PleI	GAGTC	1 cut(s)	275
PpsI	GAGTC	1 cut(s)	275
Psp6I	CCWGG	1 cut(s)	236
PspFI	CCCAGC	1 cut(s)	647
PspGI	CCWGG	1 cut(s)	236
PspN4I	GGNNCC	3 cut(s)	127, 652, 761
PspPI	GGNCC	1 cut(s)	651
PstI	CTGCAG	2 cut(s)	11, 388
PsuI	RGATCY	1 cut(s)	87
RsaI	GTAC	3 cut(s)	639, 691, 710
RsaNI	GTAC	3 cut(s)	638, 690, 709
RseI	CAYNNNNRTG	2 cut(s)	194, 809
SapI	GCTCTTC	1 cut(s)	588
SatI	GCNGC	8 cut(s)	178, 325, 328, 381, 384, 387, 614, 802
Sau3AI	GATC	4 cut(s)	87, 354, 363, 603
Sau96I	GGNCC	1 cut(s)	651
SchI	GAGTC	1 cut(s)	276
ScrFI	CCNGG	1 cut(s)	238
SduI	GDGCHC	1 cut(s)	717
SfaNI	GCATC	4 cut(s)	148, 309, 424, 670
SfcI	CTRYAG	2 cut(s)	7, 384
SmiMI	CAYNNNNRTG	2 cut(s)	194, 809
SmlI	CTYRAG	1 cut(s)	331
SmoI	CTYRAG	1 cut(s)	331
Sse9I	AATT	3 cut(s)	211, 223, 669
SsiI	CCGC	2 cut(s)	178, 614
SspI	AATATT	1 cut(s)	487
SspMI	CTAG	1 cut(s)	542
StyD4I	CCNGG	1 cut(s)	236
StyI	CCWWGG	1 cut(s)	547
TaaI	ACNGT	1 cut(s)	125
TaqI	TCGA	1 cut(s)	717
TasI	AATT	3 cut(s)	211, 223, 669
TatI	WGTACW	1 cut(s)	689
TauI	GCSGC	2 cut(s)	180, 616
TfiI	GAWTC	1 cut(s)	749
TscAI	CASTG	2 cut(s)	485, 579
TseI	GCWGC	6 cut(s)	324, 327, 380, 383, 386, 801
TspDTI	ATGAA	3 cut(s)	125, 232, 606
TspGWI	ACGGA	2 cut(s)	331, 446
TspRI	CASTG	2 cut(s)	485, 579
XspI	CTAG	1 cut(s)	542
Zsp2I	ATGCAT	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.