Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002271

Physical Location & Seq

Genomic Coordinates Forward (+)

8243475 .. 8253628

Gene Structure 10154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0105100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3642 bp

ATGGTTTCAACGAGGAGAAGTGGATCTCTCTCCGGCAATAACAGTAAAAGATCGTCGTCTTCCGACGACAACAAGCCTCAGTCGCCGAAGCGGCAGAAGGTGGATAACAATGGCGTTGGTTCGGAGAAAACAGAGAATTCGAAGGAGGTTTGTACGCCGGCCACGGCGGCGGCTGATCCCGGAGAATGCAGCGCCGCCGGCGAGGCTCAGACGGCCGGAGACGGCGCGACTTCTGTAAAGACTGAAGCTTCTGCACAAGCCGTGGCGGTGACCCCGCCGCCTGTGGCTGAAGCGTCTTCACCGGCTGCTGTGCTGGATAAGGCGAGGAGTTCGTTTTTGGCATGGAGTTCATATCAGAAGCAGAGCCTGAATTCAGGGAGTTTCGAGTTGACAACACCTTGGTGCAAACTTCTGTCACAGTCTGGACAGAATCTAAACATTGCTATCACCACATCGATTTTTACAATTGGTTCGAGTAGAAGCAGCAATTTCCCTTTGAAGGATAGTACCATTAGTGCGTGTCTGTGCAAGATCAAACGCGAACAGCGGGAGAGCGGTGCTGTAACGATTATAGAAAGTATGGGAAACAAGGGATCACTGCAAGTAAATGGGGCGCATGTGAAGAAAGGCAACAGCTGCGTGCTCAACTCGGGTGATGAAGTGGTATTTGGTTCTCTGGGGAACCATGCTTATATTTTTCAACTACTTGTGGCGGAGGGTGCGGTTAAGGGTGCAGAGGTTCAAAGTGGTGTTGGAAAATATCTGCACCTTGACAGGAGAGCCGGAGATCCTTCAGATGTGGATGGGGCTTCCATACTGGCTTCTCTTAGCATGAGACCAGAACTATCACGATGGAAGTCTGCGGCTCAGACCACCAATAAAGTCCATCCAGGGGCTGAAGTACCAGCTCAGTCTGTTATTCAAGAAGGTACAGAAGTTGAGCTTGAAGAACTCGAAGACAGCTTGACTCCAAACAGAACGACTGACAAAACAGAAGAGATTGGAGGAATCAACAAGAATCTTACTCCGGACTGCAACCCAGATTCGGGTGTAGAGGCAGACAATGTATTGGAAGAAAAAAATGAGTGGACGAGGGATTCGCTGCCAGCATCAACGTCAGGCATGTCTGTGCGGTGTGCTGTTTTTAAAGAAGGCATTCATGCAGCAATTCTTGAAGGCAATAGCATGGATGTTTCATTTGATAATTTCCCGTACTATTTGAGTGAGAATACGAAGAATGTGCTGATTGCAGCTTCATTTATACACTTGAAACATAAAGAACATGCAAAGTATACTACAGAGCTTACCACTGTGAATCCTCGAATATTGTTCTCTGGTCCTGCAGGGTCTGAGATATACCAGGAGATGTTGGCAAAGGCACTTGCTCAATATTTCGGGGCTAAGTTGCTCATATTTGATAGCCAATCACTTTTGGGTGGTTTGTCATCAAAGGAAGCCGAGCTGCCCAAGGATGGGTCTAATGGAGATAAAATAGGCACCTTGGCCAAACCAAGTCCTGTTTCCACAGACTTGTCTAAGAGCATTGATCCATTAGTTTCTGAGCTAGAGGCACCAAGGTTGGCGCCAAGCTCTTCAAATGGACCGTCATATGGCCTGGAATCCCAACATAAGACGGAGATTGACTCCATCGCTACATCCTCAGGGACATCTAAGAATTACGTGTTTAAAATAGGTGACAGAGTAAAGTTTATTGGTTTATCTTCGGGCAACTTATATCCTACAACATCTTCTTCACGGGGCCCAGTACCTGGAGCCCGAGGAGAGGCTGTGTTGGTTTTTGAGGGCAATCCTTTGTCAAAAATTGGTGTGAGGTTTGATAAACAAGTATTTGATGGTGTTGATCTTGGGGGTCTTTGTAAAGGAAATGGATTCTTCTGCAATGCCTCCGATCTTCGTTCAGAAAACACAGGTGCGGATGATCTGGATAAATTACTGATCAATACATTGTTTGAGGCTGTACATAGTGAGAGCAGAAGTTCTCCTTTCATTTTGTTCATGAAAGATGCGGAGAAGTCCCTTGTAGGAAATTCAGATTCGTATTCCACTTTCAGAGGCAGACTTGATAAGCTTCCTGATAATGTGGTTGTAATTGGCTCTCATACTCATACTGACAATCGCAAGGAGAAGTCGCATCCTGGTGGTCTACTTTTCACAAAGTTCGGTAGCAATCAAACTGCTCTTCTTGATTTGGCTTTTCCGGATAGTTTTGGAAGACTGCATGAAAGAGGGAAGGAAGTCCCCAAGGCAACAAAACTTCTGACGAAACTTTTTCCTAATAAAGTAACCATTCATATGCCACAGGATGAGGGACTTCTTGTCTCATGGAAACAGCAATTGGATCGTGATGCCGAAACCCTCAAAATGAAGGGAAATTTGAACCACTTGCGCACTGTTCTGGGTCGGTGTGGGATGGAATGTGAAGGACTTGATACGCTAAGCATCAAGGACCAAACACTTACAAATGAAAGTTCAGAGAAGGTAGTAGGATGGGCATTAAGCCATCATTTAATGGAGAATCCTGAAGCTGATCCAGAAACTAGAGTTGTTTTGTCTGCTGAGAGCATCAAGTACGGACTCGGAATCTTACAGTCTATCCAGAATGAAAATAAGAGCTTGAAGAAGTCACTTAAGGATGTTGTAACGGAAAATGAATTTGAGAAAAGGCTTTTGGCAGATGTTATCCCACCTACTGACATTGGAGTTACGTTTGATGATATTGGCGCTCTTGAAAATGTGAAGGATACATTGAAAGAATTGGTGATGCTGCCTTTACAAAGGCCGGAGCTTTTCTGCAAAGGGCAATTAACCAAGCCTTGCAAAGGCATCCTTTTATTTGGTCCCCCGGGGACAGGCAAGACAATGCTGGCAAAGGCTGTGGCTACAGAGGCTGGTGCAAACTTCATCAACATATCCATGTCGAGCATCACATCTAAGTGGTTTGGTGAGGGTGAGAAGTATGTGAAAGCTGTTTTCTCTCTAGCTAGTAAAATTGCCCCTAGTGTTGTATTTGTTGATGAAGTTGACAGCATGTTGGGCCGGCGGGAAAACCCAGGGGAGCATGAGGCAATGCGCAAGATGAAAAATGAATTTATGGTAAATTGGGATGGGCTACGAACAAAAGAAGCAGAACGAGTTCTGGTACTTGCAGCCACAAATAGGCCTTTTGACCTTGATGAAGCTGTCATTCGAAGGCTGCCCCGAAGGTTGATGGTAAATTTGCCAGACGCTCCCAATAGGGCAAAGATATTAAGAGTCATATTGGCAAAAGAGGACTTATCTCCCGATGTTGATTTTGAGGCAATTGCGAGCATGTCAGATGGATATTCTGGAAGTGACCTTAAAAATCTATGCGTGGCTGCTGCACACCGTCCCATTAAAGAGATTTTGGAAAAGGAAAAGAAGGATCGTGCTGCAGCTATAGCAGAAGGCAAACCTATTCCAGCATTGAGTAGCAGTGGCGATGTTCGGCCTGTAAACATGGATGATTTTAAATATGCTCATGAACAGGTATGTGCCAGTGTATCATCAGAGTCTGTGAACATGACAGAGCTCTTACAATGGAATGAACTATATGGAGAAGGGGGTTCTAGAAGAAAGAAGGCCCTTAGTTACTTCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005911 GO:0008150 GO:0009506 GO:0009705 GO:0012505 GO:0016020 GO:0016032 GO:0019058 GO:0019079 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046786 GO:0051704 GO:0055044 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tetraspannin

Protein Analysis

1213

Amino Acids

131.09

Weight (kDa)

5.87

Isoelectric Point (pI)

40.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FHA	PF00498	155 - 224	3.1e-06	FHA domain
DUF7751	PF24933	811 - 870	1.4e-18	Domain of unknown function (DUF7751)
AAA	PF00004	949 - 1079	1.4e-37	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	1102 - 1138	3.8e-12	AAA+ lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002271)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g21290
prunus_persica	Prupe.5G044300_v2.0.a1
pyrus_communis	pycom17g06790
rosa_chinensis	RchiOBHm_Chr7g0208491 RchiOBHm_Chr7g0208531 RchiOBHm_Chr7g0208581 RchiOBHm_Chr7g0208601
rosa_laevigata	RLG00000003207 RLG00000003208 RLG00000003209 RLG00000003210 RLG00000003211
rosa_multiflora	Rmu_co8287091.1_g000001 Rmu_co8292411.1_g000001 Rmu_sc0007490.1_g000010 Rmu_sc0013240.1_g000006
rosa_roxburghii	Rroxscaffold_3G00250410 Rroxscaffold_3G00250430 Rroxscaffold_3G00250440 Rroxscaffold_3G00250450 Rroxscaffold_3G00250480 Rroxscaffold_3G00250490
rosa_rugosa	Rorug07G0104600 Rorug07G0104700 Rorug07G0104900 Rorug07G0105100
rosa_samantha	Rh7AG238900 Rh7AG239200 Rh7AG239600 Rh7AG239700 Rh7BG234400 Rh7BG234500 Rh7BG234700 Rh7BG235000 Rh7BG235100 Rh7CG254100 Rh7CG254300 Rh7CG254500 Rh7CG254600 Rh7DG244900 Rh7DG245200 Rh7DG245600 Rh7DG245700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	2408, 3092
AccB1I	GGYRCC	3 cut(s)	1496, 1570, 1582
AccB7I	CCANNNNNTGG	1 cut(s)	1769
AccBSI	CCGCTC	1 cut(s)	555
AccI	GTMKAC	2 cut(s)	1292, 2164
AccII	CGCG	2 cut(s)	227, 540
AccIII	TCCGGA	2 cut(s)	1027, 2218
AclWI	GGATC	8 cut(s)	31, 170, 601, 782, 1541, 2367, 2543, 3432
AcoI	YGGCCR	3 cut(s)	159, 213, 1503
AcsI	RAATTY	7 cut(s)	136, 370, 2047, 2392, 2672, 3107, 3235
AcuI	CTGAAG	5 cut(s)	264, 309, 777, 918, 2562
AcyI	GRCGYC	1 cut(s)	1583
AfaI	GTAC	9 cut(s)	154, 508, 903, 931, 1214, 1767, 1980, 2591, 3162
AflII	CTTAAG	1 cut(s)	2648
AflIII	ACRYGT	1 cut(s)	1680
AhdI	GACNNNNNGTC	1 cut(s)	2336
AjnI	CCWGG	6 cut(s)	889, 1359, 1614, 1768, 2155, 3070
AjuI	GAANNNNNNNTTGG	8 cut(s)	651, 683, 1504, 1536, 2339, 2371, 2672, 2704
AleI	CACNNNNGTG	1 cut(s)	400
Alw21I	GWGCWC	2 cut(s)	645, 3573
Alw26I	GTCTC	3 cut(s)	213, 829, 2344
AlwI	GGATC	8 cut(s)	31, 170, 601, 782, 1541, 2367, 2543, 3432
AlwNI	CAGNNNCTG	6 cut(s)	367, 896, 1349, 1769, 2909, 3554
Ama87I	CYCGRG	3 cut(s)	649, 1776, 2863
Aor13HI	TCCGGA	2 cut(s)	1027, 2218
ApaI	GGGCCC	1 cut(s)	1763
ApoI	RAATTY	7 cut(s)	136, 370, 2047, 2392, 2672, 3107, 3235
ArsI	GACNNNNNNTTYG	4 cut(s)	1081, 1113, 1589, 1621
Asp700I	GAANNNNTTC	2 cut(s)	1155, 3153
AspLEI	GCGC	7 cut(s)	194, 227, 616, 1585, 2409, 2744, 3093
AspS9I	GGNCC	8 cut(s)	1337, 1601, 1759, 1760, 2467, 2858, 3055, 3622
AsuC2I	CCSGG	3 cut(s)	180, 2864, 2865
AsuHPI	GGTGA	8 cut(s)	280, 291, 439, 665, 1706, 2791, 2975, 2981
AsuII	TTCGAA	2 cut(s)	140, 3208
AvaI	CYCGRG	3 cut(s)	649, 1776, 2863
AvaII	GGWCC	4 cut(s)	1337, 1601, 2467, 2858
AxyI	CCTNAGG	1 cut(s)	1660
BaeGI	GKGCMC	1 cut(s)	1763
BaeI	ACNNNNGTAYC	2 cut(s)	921, 954
BalI	TGGCCA	1 cut(s)	1505
BanI	GGYRCC	3 cut(s)	1496, 1570, 1582
BanII	GRGCYC	3 cut(s)	1763, 1777, 3573
BbsI	GAAGAC	4 cut(s)	51, 288, 963, 2239
Bbv12I	GWGCWC	2 cut(s)	645, 3573
BceAI	ACGGC	4 cut(s)	180, 228, 238, 245
BcgI	CGANNNNNNTGC	4 cut(s)	1222, 1256, 2342, 2376
BciT130I	CCWGG	6 cut(s)	891, 1361, 1616, 1770, 2157, 3072
BciVI	GTATCC	1 cut(s)	2755
BclI	TGATCA	1 cut(s)	1956
BcnI	CCSGG	3 cut(s)	180, 2864, 2865
BcoDI	GTCTC	3 cut(s)	213, 829, 2344
BfaI	CTAG	6 cut(s)	1565, 2559, 2999, 3003, 3018, 3609
BfmI	CTRYAG	5 cut(s)	1296, 1341, 2901, 3432, 3438
BfoI	RGCGCY	3 cut(s)	195, 1586, 2745
BfrI	CTTAAG	1 cut(s)	2648
BfuI	GTATCC	1 cut(s)	2755
BglI	GCCNNNNNGGC	3 cut(s)	91, 167, 203
BlpI	GCTNAGC	1 cut(s)	2456
Bme1390I	CCNGG	9 cut(s)	180, 891, 1361, 1616, 1770, 2157, 2864, 2865, 3072
Bme18I	GGWCC	4 cut(s)	1337, 1601, 2467, 2858
BmeRI	GACNNNNNGTC	1 cut(s)	2336
BmeT110I	CYCGRG	3 cut(s)	649, 1776, 2863
BmgT120I	GGNCC	8 cut(s)	1337, 1601, 1759, 1760, 2467, 2858, 3055, 3622
BmiI	GGNNCC	8 cut(s)	683, 1498, 1572, 1584, 1760, 1761, 1774, 2860
BmrFI	CCNGG	9 cut(s)	180, 891, 1361, 1616, 1770, 2157, 2864, 2865, 3072
BmrI	ACTGGG	1 cut(s)	1757
BmsI	GCATC	9 cut(s)	1118, 2014, 2161, 2356, 2469, 2592, 2772, 2853, 2952
BmuI	ACTGGG	1 cut(s)	1757
BpiI	GAAGAC	4 cut(s)	51, 288, 963, 2239
BplI	GAGNNNNNCTC	2 cut(s)	1628, 1660
BpmI	CTGGAG	1 cut(s)	1791
Bpu1102I	GCTNAGC	1 cut(s)	2456
Bpu14I	TTCGAA	2 cut(s)	140, 3208
BpuMI	CCSGG	3 cut(s)	180, 2864, 2865
Bsa29I	ATCGAT	1 cut(s)	455
BsaAI	YACGTR	1 cut(s)	1681
BsaHI	GRCGYC	1 cut(s)	1583
BsaI	GGTCTC	1 cut(s)	829
BsaWI	WCCGGW	2 cut(s)	1027, 2218
BsaXI	ACNNNNNCTCC	2 cut(s)	1773, 1803
Bse118I	RCCGGY	4 cut(s)	157, 197, 301, 3057
Bse1I	ACTGG	3 cut(s)	822, 1763, 3537
Bse21I	CCTNAGG	1 cut(s)	1660
Bse3DI	GCAATG	3 cut(s)	438, 1906, 3093
BseAI	TCCGGA	2 cut(s)	1027, 2218
BseBI	CCWGG	6 cut(s)	891, 1361, 1616, 1770, 2157, 3072
BseCI	ATCGAT	1 cut(s)	455
BseMI	GCAATG	3 cut(s)	438, 1906, 3093
BseMII	CTCAG	8 cut(s)	92, 221, 881, 923, 1341, 1551, 1674, 2568
BseNI	ACTGG	3 cut(s)	822, 1763, 3537
BseRI	GAGGAG	3 cut(s)	28, 340, 1794
BseSI	GKGCMC	1 cut(s)	1763
BseX3I	CGGCCG	1 cut(s)	213
BsgI	GTGCAG	4 cut(s)	237, 749, 753, 3366
Bsh1236I	CGCG	2 cut(s)	227, 540
Bsh1285I	CGRYCG	1 cut(s)	216
BshNI	GGYRCC	3 cut(s)	1496, 1570, 1582
BshVI	ATCGAT	1 cut(s)	455
BsiEI	CGRYCG	1 cut(s)	216
BsiHKAI	GWGCWC	2 cut(s)	645, 3573
BsiHKCI	CYCGRG	3 cut(s)	649, 1776, 2863
BslFI	GGGAC	7 cut(s)	1678, 2020, 2243, 2343, 2844, 2881, 3375
BsmAI	GTCTC	3 cut(s)	213, 829, 2344
BsmBI	CGTCTC	1 cut(s)	213
BsmFI	GGGAC	7 cut(s)	1678, 2020, 2243, 2343, 2844, 2881, 3375
BsmI	GAATGC	2 cut(s)	191, 1155
Bso31I	GGTCTC	1 cut(s)	829
BsoBI	CYCGRG	3 cut(s)	649, 1776, 2863
Bsp119I	TTCGAA	2 cut(s)	140, 3208
Bsp120I	GGGCCC	1 cut(s)	1759
Bsp1286I	GDGCHC	4 cut(s)	645, 1763, 1777, 3573
Bsp13I	TCCGGA	2 cut(s)	1027, 2218
Bsp1407I	TGTACA	1 cut(s)	1978
Bsp1720I	GCTNAGC	1 cut(s)	2456
BspCNI	CTCAG	8 cut(s)	91, 220, 880, 922, 1342, 1552, 1673, 2569
BspDI	ATCGAT	1 cut(s)	455
BspEI	TCCGGA	2 cut(s)	1027, 2218
BspFNI	CGCG	2 cut(s)	227, 540
BspHI	TCATGA	2 cut(s)	2016, 3520
BspLI	GGNNCC	8 cut(s)	683, 1498, 1572, 1584, 1760, 1761, 1774, 2860
BspMAI	CTGCAG	2 cut(s)	1345, 3436
BspPI	GGATC	8 cut(s)	31, 170, 601, 782, 1541, 2367, 2543, 3432
BspQI	GCTCTTC	2 cut(s)	1597, 2205
BspT104I	TTCGAA	2 cut(s)	140, 3208
BspT107I	GGYRCC	3 cut(s)	1496, 1570, 1582
BspTI	CTTAAG	1 cut(s)	2648
BspTNI	GGTCTC	1 cut(s)	829
BsrBI	CCGCTC	1 cut(s)	555
BsrDI	GCAATG	3 cut(s)	438, 1906, 3093
BsrFI	RCCGGY	4 cut(s)	157, 197, 301, 3057
BsrGI	TGTACA	1 cut(s)	1978
BsrI	ACTGG	3 cut(s)	822, 1763, 3537
BssAI	RCCGGY	4 cut(s)	157, 197, 301, 3057
BssNAI	GTATAC	1 cut(s)	1293
BssNI	GRCGYC	1 cut(s)	1583
BssT1I	CCWWGG	5 cut(s)	398, 1467, 1500, 1574, 2262
Bst1107I	GTATAC	1 cut(s)	1293
Bst2UI	CCWGG	6 cut(s)	891, 1361, 1616, 1770, 2157, 3072
Bst4CI	ACNGT	7 cut(s)	44, 420, 1312, 1605, 2413, 2610, 3389
Bst6I	CTCTTC	3 cut(s)	990, 1597, 2205
BstACI	GRCGYC	1 cut(s)	1583
BstAFI	CTTAAG	1 cut(s)	2648
BstAPI	GCANNNNNTGC	1 cut(s)	636
BstAUI	TGTACA	1 cut(s)	1978
BstBAI	YACGTR	1 cut(s)	1681
BstBI	TTCGAA	2 cut(s)	140, 3208
BstC8I	GCNNGC	7 cut(s)	159, 199, 641, 1107, 2886, 3059, 3328
BstDSI	CCRYGG	2 cut(s)	162, 261
BstEII	GGTNACC	1 cut(s)	268
BstENI	CCTNNNNNAGG	1 cut(s)	2838
BstFNI	CGCG	2 cut(s)	227, 540
BstH2I	RGCGCY	3 cut(s)	195, 1586, 2745
BstHHI	GCGC	7 cut(s)	194, 227, 616, 1585, 2409, 2744, 3093
BstMAI	GTCTC	3 cut(s)	213, 829, 2344
BstMCI	CGRYCG	1 cut(s)	216
BstNI	CCWGG	6 cut(s)	891, 1361, 1616, 1770, 2157, 3072
BstNSI	RCATGY	5 cut(s)	620, 1126, 1286, 3052, 3334
BstPI	GGTNACC	1 cut(s)	268
BstSCI	CCNGG	9 cut(s)	178, 889, 1359, 1614, 1768, 2155, 2862, 2863, 3070
BstSFI	CTRYAG	5 cut(s)	1296, 1341, 2901, 3432, 3438
BstSLI	GKGCMC	1 cut(s)	1763
BstUI	CGCG	2 cut(s)	227, 540
BstV2I	GAAGAC	4 cut(s)	51, 288, 963, 2239
BstX2I	RGATCY	2 cut(s)	23, 787
BstYI	RGATCY	2 cut(s)	23, 787
BstZ17I	GTATAC	1 cut(s)	1293
BstZI	CGGCCG	1 cut(s)	213
Bsu15I	ATCGAT	1 cut(s)	455
Bsu36I	CCTNAGG	1 cut(s)	1660
BsuI	GTATCC	1 cut(s)	2755
BsuTUI	ATCGAT	1 cut(s)	455
BtgI	CCRYGG	2 cut(s)	162, 261
BtgZI	GCGATG	2 cut(s)	1633, 3495
BtsI	GCAGTG	2 cut(s)	596, 3481
BtsIMutI	CAGTG	5 cut(s)	596, 1308, 2409, 3481, 3544
Cac8I	GCNNGC	7 cut(s)	159, 199, 641, 1107, 2886, 3059, 3328
CaiI	CAGNNNCTG	6 cut(s)	367, 896, 1349, 1769, 2909, 3554
CciI	TCATGA	2 cut(s)	2016, 3520
CfoI	GCGC	7 cut(s)	194, 227, 616, 1585, 2409, 2744, 3093
Cfr10I	RCCGGY	4 cut(s)	157, 197, 301, 3057
Cfr13I	GGNCC	8 cut(s)	1337, 1601, 1759, 1760, 2467, 2858, 3055, 3622
Cfr9I	CCCGGG	1 cut(s)	2863
ClaI	ATCGAT	1 cut(s)	455
CseI	GACGC	2 cut(s)	282, 3254
Csp6I	GTAC	9 cut(s)	153, 507, 902, 930, 1213, 1766, 1979, 2590, 3161
CspCI	CAANNNNNGTGG	2 cut(s)	2877, 2912
CviQI	GTAC	9 cut(s)	153, 507, 902, 930, 1213, 1766, 1979, 2590, 3161
DinI	GGCGCC	1 cut(s)	1584
DraI	TTTAAA	3 cut(s)	1147, 1687, 3511
DriI	GACNNNNNGTC	1 cut(s)	2336
EaeI	YGGCCR	3 cut(s)	159, 213, 1503
EagI	CGGCCG	1 cut(s)	213
Eam1104I	CTCTTC	3 cut(s)	990, 1597, 2205
Eam1105I	GACNNNNNGTC	1 cut(s)	2336
EarI	CTCTTC	3 cut(s)	990, 1597, 2205
EciI	GGCGGA	1 cut(s)	728
Ecl136II	GAGCTC	1 cut(s)	3571
EclXI	CGGCCG	1 cut(s)	213
Eco130I	CCWWGG	5 cut(s)	398, 1467, 1500, 1574, 2262
Eco147I	AGGCCT	1 cut(s)	3181
Eco24I	GRGCYC	3 cut(s)	1763, 1777, 3573
Eco31I	GGTCTC	1 cut(s)	829
Eco47I	GGWCC	4 cut(s)	1337, 1601, 2467, 2858
Eco52I	CGGCCG	1 cut(s)	213
Eco53kI	GAGCTC	1 cut(s)	3571
Eco57I	CTGAAG	5 cut(s)	264, 309, 777, 918, 2562
Eco81I	CCTNAGG	1 cut(s)	1660
Eco88I	CYCGRG	3 cut(s)	649, 1776, 2863
Eco91I	GGTNACC	1 cut(s)	268
EcoICRI	GAGCTC	1 cut(s)	3571
EcoNI	CCTNNNNNAGG	1 cut(s)	2838
EcoO109I	RGGNCCY	2 cut(s)	1759, 3622
EcoO65I	GGTNACC	1 cut(s)	268
EcoRI	GAATTC	2 cut(s)	136, 370
EcoRII	CCWGG	6 cut(s)	889, 1359, 1614, 1768, 2155, 3070
EcoT14I	CCWWGG	5 cut(s)	398, 1467, 1500, 1574, 2262
EcoT38I	GRGCYC	3 cut(s)	1763, 1777, 3573
EgeI	GGCGCC	1 cut(s)	1584
EheI	GGCGCC	1 cut(s)	1584
ErhI	CCWWGG	5 cut(s)	398, 1467, 1500, 1574, 2262
Esp3I	CGTCTC	1 cut(s)	213
FalI	AAGNNNNNCTT	6 cut(s)	927, 959, 1987, 2019, 2832, 2864
FaqI	GGGAC	7 cut(s)	1678, 2020, 2243, 2343, 2844, 2881, 3375
FauI	CCCGC	3 cut(s)	282, 540, 3054
FauNDI	CATATG	2 cut(s)	1609, 2313
FbaI	TGATCA	1 cut(s)	1956
FblI	GTMKAC	2 cut(s)	1292, 2164
FriOI	GRGCYC	3 cut(s)	1763, 1777, 3573
FspBI	CTAG	6 cut(s)	1565, 2559, 2999, 3003, 3018, 3609
FspI	TGCGCA	2 cut(s)	2408, 3092
GlaI	GCGC	7 cut(s)	193, 226, 615, 1584, 2408, 2743, 3092
GsuI	CTGGAG	1 cut(s)	1791
HaeII	RGCGCY	3 cut(s)	195, 1586, 2745
HgaI	GACGC	2 cut(s)	282, 3254
HhaI	GCGC	7 cut(s)	194, 227, 616, 1585, 2409, 2744, 3093
Hin1I	GRCGYC	1 cut(s)	1583
Hin6I	GCGC	7 cut(s)	192, 225, 614, 1583, 2407, 2742, 3091
HinP1I	GCGC	7 cut(s)	192, 225, 614, 1583, 2407, 2742, 3091
HincII	GTYRAC	2 cut(s)	390, 3043
HindII	GTYRAC	2 cut(s)	390, 3043
HindIII	AAGCTT	2 cut(s)	246, 2087
HphI	GGTGA	8 cut(s)	280, 291, 439, 665, 1706, 2791, 2975, 2981
Hpy166II	GTNNAC	7 cut(s)	390, 1089, 1293, 2165, 3043, 3496, 3559
Hpy8I	GTNNAC	7 cut(s)	390, 1089, 1293, 2165, 3043, 3496, 3559
Hpy99I	CGWCG	2 cut(s)	58, 68
HpyCH4III	ACNGT	7 cut(s)	44, 420, 1312, 1605, 2413, 2610, 3389
HpyCH4IV	ACGT	3 cut(s)	1115, 1680, 2726
HpySE526I	ACGT	3 cut(s)	1115, 1680, 2726
Hsp92I	GRCGYC	1 cut(s)	1583
HspAI	GCGC	7 cut(s)	192, 225, 614, 1583, 2407, 2742, 3091
KasI	GGCGCC	1 cut(s)	1582
Kpn2I	TCCGGA	2 cut(s)	1027, 2218
KroI	GCCGGC	3 cut(s)	157, 197, 3057
KroNI	GCCGGC	3 cut(s)	159, 199, 3059
Ksp22I	TGATCA	1 cut(s)	1956
LguI	GCTCTTC	2 cut(s)	1597, 2205
LmnI	GCTCC	4 cut(s)	1772, 2803, 3076, 3253
LweI	GCATC	9 cut(s)	1118, 2014, 2161, 2356, 2469, 2592, 2772, 2853, 2952
MaeI	CTAG	6 cut(s)	1565, 2559, 2999, 3003, 3018, 3609
MaeII	ACGT	3 cut(s)	1115, 1680, 2726
MbiI	CCGCTC	1 cut(s)	555
MfeI	CAATTG	3 cut(s)	465, 2354, 3321
MflI	RGATCY	2 cut(s)	23, 787
MhlI	GDGCHC	4 cut(s)	645, 1763, 1777, 3573
MlsI	TGGCCA	1 cut(s)	1505
MluNI	TGGCCA	1 cut(s)	1505
Mly113I	GGCGCC	1 cut(s)	1583
MlyI	GAGTC	5 cut(s)	961, 1637, 2589, 3282, 3560
MmeI	TCCRAC	2 cut(s)	87, 733
Mox20I	TGGCCA	1 cut(s)	1505
MreI	CGCCGGCG	1 cut(s)	197
MroI	TCCGGA	2 cut(s)	1027, 2218
MroNI	GCCGGC	3 cut(s)	157, 197, 3057
MroXI	GAANNNNTTC	2 cut(s)	1155, 3153
MscI	TGGCCA	1 cut(s)	1505
MslI	CAYNNNNRTG	6 cut(s)	400, 1127, 2157, 2312, 2933, 2953
Msp20I	TGGCCA	1 cut(s)	1505
MspA1I	CMGCKG	2 cut(s)	547, 636
MspCI	CTTAAG	1 cut(s)	2648
MspR9I	CCNGG	9 cut(s)	180, 891, 1361, 1616, 1770, 2157, 2864, 2865, 3072
MunI	CAATTG	3 cut(s)	465, 2354, 3321
Mva1269I	GAATGC	2 cut(s)	191, 1155
MvaI	CCWGG	6 cut(s)	891, 1361, 1616, 1770, 2157, 3072
MvnI	CGCG	2 cut(s)	227, 540
NaeI	GCCGGC	3 cut(s)	159, 199, 3059
NarI	GGCGCC	1 cut(s)	1583
NciI	CCSGG	3 cut(s)	180, 2864, 2865
NdeI	CATATG	2 cut(s)	1609, 2313
NgoMIV	GCCGGC	3 cut(s)	157, 197, 3057
NlaIV	GGNNCC	8 cut(s)	683, 1498, 1572, 1584, 1760, 1761, 1774, 2860
NmeAIII	GCCGAG	1 cut(s)	1483
NmuCI	GTSAC	5 cut(s)	268, 414, 1694, 2643, 3353
NsbI	TGCGCA	2 cut(s)	2408, 3092
NspI	RCATGY	5 cut(s)	620, 1126, 1286, 3052, 3334
NspV	TTCGAA	2 cut(s)	140, 3208
OliI	CACNNNNGTG	1 cut(s)	400
PagI	TCATGA	2 cut(s)	2016, 3520
PasI	CCCWGGG	1 cut(s)	3071
PceI	AGGCCT	1 cut(s)	3181
PciSI	GCTCTTC	2 cut(s)	1597, 2205
PctI	GAATGC	2 cut(s)	191, 1155
PdiI	GCCGGC	3 cut(s)	159, 199, 3059
PdmI	GAANNNNTTC	2 cut(s)	1155, 3153
PflMI	CCANNNNNTGG	1 cut(s)	1769
PfoI	TCCNGGA	1 cut(s)	178
PleI	GAGTC	5 cut(s)	961, 1637, 2589, 3281, 3559
PluTI	GGCGCC	1 cut(s)	1586
PpsI	GAGTC	5 cut(s)	961, 1637, 2589, 3281, 3559
Ppu21I	YACGTR	1 cut(s)	1681
Psp124BI	GAGCTC	1 cut(s)	3573
Psp6I	CCWGG	6 cut(s)	889, 1359, 1614, 1768, 2155, 3070
PspEI	GGTNACC	1 cut(s)	268
PspGI	CCWGG	6 cut(s)	889, 1359, 1614, 1768, 2155, 3070
PspN4I	GGNNCC	8 cut(s)	683, 1498, 1572, 1584, 1760, 1761, 1774, 2860
PspOMI	GGGCCC	1 cut(s)	1759
PspPI	GGNCC	8 cut(s)	1337, 1601, 1759, 1760, 2467, 2858, 3055, 3622
PstI	CTGCAG	2 cut(s)	1345, 3436
PstNI	CAGNNNCTG	6 cut(s)	367, 896, 1349, 1769, 2909, 3554
PsuI	RGATCY	2 cut(s)	23, 787
PvuII	CAGCTG	1 cut(s)	636
RsaI	GTAC	9 cut(s)	154, 508, 903, 931, 1214, 1767, 1980, 2591, 3162
RsaNI	GTAC	9 cut(s)	153, 507, 902, 930, 1213, 1766, 1979, 2590, 3161
RseI	CAYNNNNRTG	6 cut(s)	400, 1127, 2157, 2312, 2933, 2953
SacI	GAGCTC	1 cut(s)	3573
SapI	GCTCTTC	2 cut(s)	1597, 2205
Sau96I	GGNCC	8 cut(s)	1337, 1601, 1759, 1760, 2467, 2858, 3055, 3622
SbfI	CCTGCAGG	1 cut(s)	1345
SchI	GAGTC	5 cut(s)	961, 1637, 2589, 3282, 3560
ScrFI	CCNGG	9 cut(s)	180, 891, 1361, 1616, 1770, 2157, 2864, 2865, 3072
SdaI	CCTGCAGG	1 cut(s)	1345
SduI	GDGCHC	4 cut(s)	645, 1763, 1777, 3573
SfaNI	GCATC	9 cut(s)	1118, 2014, 2161, 2356, 2469, 2592, 2772, 2853, 2952
SfcI	CTRYAG	5 cut(s)	1296, 1341, 2901, 3432, 3438
SfoI	GGCGCC	1 cut(s)	1584
SfuI	TTCGAA	2 cut(s)	140, 3208
SgrAI	CRCCGGYG	1 cut(s)	197
SinI	GGWCC	4 cut(s)	1337, 1601, 2467, 2858
SmaI	CCCGGG	1 cut(s)	2865
SmiMI	CAYNNNNRTG	6 cut(s)	400, 1127, 2157, 2312, 2933, 2953
SmlI	CTYRAG	1 cut(s)	2648
SmoI	CTYRAG	1 cut(s)	2648
Sse8387I	CCTGCAGG	1 cut(s)	1345
SseBI	AGGCCT	1 cut(s)	3181
SspDI	GGCGCC	1 cut(s)	1582
SspI	AATATT	2 cut(s)	1326, 1391
SspMI	CTAG	6 cut(s)	1565, 2559, 2999, 3003, 3018, 3609
SstI	GAGCTC	1 cut(s)	3573
StuI	AGGCCT	1 cut(s)	3181
StyD4I	CCNGG	9 cut(s)	178, 889, 1359, 1614, 1768, 2155, 2862, 2863, 3070
StyI	CCWWGG	5 cut(s)	398, 1467, 1500, 1574, 2262
TaaI	ACNGT	7 cut(s)	44, 420, 1312, 1605, 2413, 2610, 3389
TaiI	ACGT	3 cut(s)	1118, 1683, 2729
TaqI	TCGA	8 cut(s)	140, 384, 455, 473, 954, 1321, 2939, 3208
TatI	WGTACW	1 cut(s)	1978
TauI	GCSGC	6 cut(s)	94, 170, 173, 197, 280, 866
TscAI	CASTG	5 cut(s)	603, 1315, 2416, 3481, 3544
TseFI	GTSAC	5 cut(s)	268, 414, 1694, 2643, 3353
Tsp45I	GTSAC	5 cut(s)	268, 414, 1694, 2643, 3353
TspGWI	ACGGA	3 cut(s)	1649, 2607, 2678
TspMI	CCCGGG	1 cut(s)	2863
TspRI	CASTG	5 cut(s)	603, 1315, 2416, 3481, 3544
Van91I	CCANNNNNTGG	1 cut(s)	1769
Vha464I	CTTAAG	1 cut(s)	2648
VpaK11BI	GGWCC	4 cut(s)	1337, 1601, 2467, 2858
XagI	CCTNNNNNAGG	1 cut(s)	2838
XapI	RAATTY	7 cut(s)	136, 370, 2047, 2392, 2672, 3107, 3235
XbaI	TCTAGA	1 cut(s)	3608
XceI	RCATGY	5 cut(s)	620, 1126, 1286, 3052, 3334
XmaI	CCCGGG	1 cut(s)	2863
XmiI	GTMKAC	2 cut(s)	1292, 2164
XmnI	GAANNNNTTC	2 cut(s)	1155, 3153
XspI	CTAG	6 cut(s)	1565, 2559, 2999, 3003, 3018, 3609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.