Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002271

Physical Location & Seq

Genomic Coordinates Reverse (-)

20535455 .. 20535862

Gene Structure 408 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG234500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGAGAGTTAGTGTGGTCAAGACGAGTGGACACTCCTCATCAGCGGCAGCTCTGTTAGCAATGATGGTGGTGATGATGACTATGTTCATCACCAAAACTGATTGCTTCCGCATCAACCAGACAATCACCGTCTCCTCTACTTGGTGCGATGGCCTCAACGATGACTTGTCGTGCCTAACTGGACAGACTGATTTGGATTCGGACGAGTTCATGCTGGACTCTGAATTCAGCAGAAGAATCCTGACTGATCAAGGATCCTACTCTGGTAAGACCTTAAATCCTGCAACGGCTGTGTCGTGTGACCGAAAGGGGTTTCCTCCCTGCCTCGCTAGCTCAAAAAACAAGAGCCCCCCAGCAGCACGCTGCAACGAGGCGCCTACCAATAGAGATTGCTACCACTATAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

14.75

Weight (kDa)

6.05

Isoelectric Point (pI)

47.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002271)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g21290
prunus_persica	Prupe.5G044300_v2.0.a1
pyrus_communis	pycom17g06790
rosa_chinensis	RchiOBHm_Chr7g0208491 RchiOBHm_Chr7g0208531 RchiOBHm_Chr7g0208581 RchiOBHm_Chr7g0208601
rosa_laevigata	RLG00000003207 RLG00000003208 RLG00000003209 RLG00000003210 RLG00000003211
rosa_multiflora	Rmu_co8287091.1_g000001 Rmu_co8292411.1_g000001 Rmu_sc0007490.1_g000010 Rmu_sc0013240.1_g000006
rosa_roxburghii	Rroxscaffold_3G00250410 Rroxscaffold_3G00250430 Rroxscaffold_3G00250440 Rroxscaffold_3G00250450 Rroxscaffold_3G00250480 Rroxscaffold_3G00250490
rosa_rugosa	Rorug07G0104600 Rorug07G0104700 Rorug07G0104900 Rorug07G0105100
rosa_samantha	Rh7AG238900 Rh7AG239200 Rh7AG239600 Rh7AG239700 Rh7BG234400 Rh7BG234500 Rh7BG234700 Rh7BG235000 Rh7BG235100 Rh7CG254100 Rh7CG254300 Rh7CG254500 Rh7CG254600 Rh7DG244900 Rh7DG245200 Rh7DG245600 Rh7DG245700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	373
AciI	CCGC	2 cut(s)	44, 109
AclWI	GGATC	2 cut(s)	249, 262
AcsI	RAATTY	1 cut(s)	224
AcyI	GRCGYC	1 cut(s)	374
AfiI	CCNNNNNNNGG	1 cut(s)	141
AluBI	AGCT	2 cut(s)	50, 333
AluI	AGCT	2 cut(s)	50, 333
Alw26I	GTCTC	1 cut(s)	136
AlwI	GGATC	2 cut(s)	249, 262
AoxI	GGCC	1 cut(s)	151
ApeKI	GCWGC	3 cut(s)	47, 356, 363
ApoI	RAATTY	1 cut(s)	224
AspLEI	GCGC	1 cut(s)	376
AsuHPI	GGTGA	3 cut(s)	82, 82, 118
AsuNHI	GCTAGC	1 cut(s)	329
BamHI	GGATCC	1 cut(s)	254
BanI	GGYRCC	1 cut(s)	373
BanII	GRGCYC	1 cut(s)	350
BbvI	GCAGC	3 cut(s)	59, 350, 368
BccI	CCATC	2 cut(s)	58, 143
BceAI	ACGGC	1 cut(s)	303
BclI	TGATCA	1 cut(s)	247
BcoDI	GTCTC	1 cut(s)	136
BfaI	CTAG	1 cut(s)	330
BfoI	RGCGCY	1 cut(s)	377
BisI	GCNGC	4 cut(s)	45, 48, 357, 364
BlsI	GCNGC	4 cut(s)	46, 49, 358, 365
BmiI	GGNNCC	2 cut(s)	256, 375
BmsI	GCATC	1 cut(s)	120
BmtI	GCTAGC	1 cut(s)	333
BsaHI	GRCGYC	1 cut(s)	374
Bsc4I	CCNNNNNNNGG	1 cut(s)	141
Bse1I	ACTGG	1 cut(s)	184
Bse3DI	GCAATG	1 cut(s)	66
BseLI	CCNNNNNNNGG	1 cut(s)	141
BseMI	GCAATG	1 cut(s)	66
BseNI	ACTGG	1 cut(s)	184
BseRI	GAGGAG	2 cut(s)	25, 124
BseXI	GCAGC	3 cut(s)	59, 350, 368
BseYI	CCCAGC	1 cut(s)	352
BshFI	GGCC	1 cut(s)	153
BshNI	GGYRCC	1 cut(s)	373
BslI	CCNNNNNNNGG	1 cut(s)	141
BsmAI	GTCTC	1 cut(s)	136
BsmBI	CGTCTC	1 cut(s)	136
BsnI	GGCC	1 cut(s)	153
Bsp1286I	GDGCHC	1 cut(s)	350
Bsp143I	GATC	2 cut(s)	247, 254
BspACI	CCGC	2 cut(s)	44, 109
BspANI	GGCC	1 cut(s)	153
BspLI	GGNNCC	2 cut(s)	256, 375
BspOI	GCTAGC	1 cut(s)	333
BspPI	GGATC	2 cut(s)	249, 262
BspT107I	GGYRCC	1 cut(s)	373
BsrDI	GCAATG	1 cut(s)	66
BsrI	ACTGG	1 cut(s)	184
BssMI	GATC	2 cut(s)	247, 254
BssNI	GRCGYC	1 cut(s)	374
Bst4CI	ACNGT	1 cut(s)	130
BstACI	GRCGYC	1 cut(s)	374
BstC8I	GCNNGC	2 cut(s)	331, 361
BstH2I	RGCGCY	1 cut(s)	377
BstHHI	GCGC	1 cut(s)	376
BstKTI	GATC	2 cut(s)	250, 257
BstMAI	GTCTC	1 cut(s)	136
BstMBI	GATC	2 cut(s)	247, 254
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 330
BstV1I	GCAGC	3 cut(s)	59, 350, 368
BstX2I	RGATCY	1 cut(s)	254
BstYI	RGATCY	1 cut(s)	254
BsuRI	GGCC	1 cut(s)	153
BtgZI	GCGATG	1 cut(s)	162
Cac8I	GCNNGC	2 cut(s)	331, 361
CfoI	GCGC	1 cut(s)	376
CspCI	CAANNNNNGTGG	4 cut(s)	7, 42, 48, 83
CviAII	CATG	1 cut(s)	211
CviJI	RGCY	5 cut(s)	50, 153, 290, 333, 348
CviKI_1	RGCY	5 cut(s)	50, 153, 290, 333, 348
DinI	GGCGCC	1 cut(s)	375
DpnI	GATC	2 cut(s)	249, 256
DpnII	GATC	2 cut(s)	247, 254
Eco24I	GRGCYC	1 cut(s)	350
EcoRI	GAATTC	1 cut(s)	224
EcoT38I	GRGCYC	1 cut(s)	350
EgeI	GGCGCC	1 cut(s)	375
EheI	GGCGCC	1 cut(s)	375
Esp3I	CGTCTC	1 cut(s)	136
FaeI	CATG	1 cut(s)	214
FaiI	YATR	3 cut(s)	83, 212, 402
FatI	CATG	1 cut(s)	210
FbaI	TGATCA	1 cut(s)	247
Fnu4HI	GCNGC	4 cut(s)	45, 48, 357, 364
FriOI	GRGCYC	1 cut(s)	350
Fsp4HI	GCNGC	4 cut(s)	45, 48, 357, 364
FspBI	CTAG	1 cut(s)	330
GlaI	GCGC	1 cut(s)	375
GluI	GCNGC	4 cut(s)	45, 48, 357, 364
GsaI	CCCAGC	1 cut(s)	356
HaeII	RGCGCY	1 cut(s)	377
HaeIII	GGCC	1 cut(s)	153
HhaI	GCGC	1 cut(s)	376
Hin1I	GRCGYC	1 cut(s)	374
Hin1II	CATG	1 cut(s)	214
Hin6I	GCGC	1 cut(s)	374
HinP1I	GCGC	1 cut(s)	374
HinfI	GANTC	3 cut(s)	197, 218, 237
HphI	GGTGA	3 cut(s)	82, 82, 118
Hpy166II	GTNNAC	1 cut(s)	29
Hpy188I	TCNGA	2 cut(s)	202, 223
Hpy188III	TCNNGA	2 cut(s)	19, 241
Hpy8I	GTNNAC	1 cut(s)	29
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4V	TGCA	2 cut(s)	284, 366
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 330
Hsp92I	GRCGYC	1 cut(s)	374
Hsp92II	CATG	1 cut(s)	214
HspAI	GCGC	1 cut(s)	374
KasI	GGCGCC	1 cut(s)	373
Ksp22I	TGATCA	1 cut(s)	247
Kzo9I	GATC	2 cut(s)	247, 254
LpnPI	CCDG	8 cut(s)	131, 165, 200, 249, 254, 294, 334, 366
Lsp1109I	GCAGC	3 cut(s)	59, 350, 368
LweI	GCATC	1 cut(s)	120
MaeI	CTAG	1 cut(s)	330
MaeIII	GTNAC	1 cut(s)	299
MalI	GATC	2 cut(s)	249, 256
MboI	GATC	2 cut(s)	247, 254
MboII	GAAGA	1 cut(s)	246
MflI	RGATCY	1 cut(s)	254
MhlI	GDGCHC	1 cut(s)	350
MluCI	AATT	2 cut(s)	224, 403
Mly113I	GGCGCC	1 cut(s)	374
MlyI	GAGTC	1 cut(s)	212
MnlI	CCTC	6 cut(s)	46, 145, 164, 327, 335, 364
MseI	TTAA	1 cut(s)	275
MspA1I	CMGCKG	1 cut(s)	44
MwoI	GCNNNNNNNGC	2 cut(s)	56, 330
NarI	GGCGCC	1 cut(s)	374
NdeII	GATC	2 cut(s)	247, 254
NheI	GCTAGC	1 cut(s)	329
NlaIII	CATG	1 cut(s)	214
NlaIV	GGNNCC	2 cut(s)	256, 375
NmuCI	GTSAC	1 cut(s)	299
PcsI	WCGNNNNNNNCGW	1 cut(s)	293
PfeI	GAWTC	2 cut(s)	197, 237
PkrI	GCNGC	4 cut(s)	46, 49, 358, 365
PleI	GAGTC	1 cut(s)	212
PluTI	GGCGCC	1 cut(s)	377
PpsI	GAGTC	1 cut(s)	212
PspFI	CCCAGC	1 cut(s)	352
PspN4I	GGNNCC	2 cut(s)	256, 375
PsuI	RGATCY	1 cut(s)	254
SaqAI	TTAA	1 cut(s)	275
SatI	GCNGC	4 cut(s)	45, 48, 357, 364
Sau3AI	GATC	2 cut(s)	247, 254
SchI	GAGTC	1 cut(s)	212
SduI	GDGCHC	1 cut(s)	350
SetI	ASST	3 cut(s)	52, 275, 335
SfaNI	GCATC	1 cut(s)	120
SfoI	GGCGCC	1 cut(s)	375
Sse9I	AATT	2 cut(s)	224, 403
SsiI	CCGC	2 cut(s)	44, 109
SspDI	GGCGCC	1 cut(s)	373
SspMI	CTAG	1 cut(s)	330
TaaI	ACNGT	1 cut(s)	130
TaqII	GACCGA	1 cut(s)	318
TasI	AATT	2 cut(s)	224, 403
TauI	GCSGC	1 cut(s)	47
TfiI	GAWTC	2 cut(s)	197, 237
Tru1I	TTAA	1 cut(s)	275
Tru9I	TTAA	1 cut(s)	275
TseFI	GTSAC	1 cut(s)	299
TseI	GCWGC	3 cut(s)	47, 356, 363
Tsp45I	GTSAC	1 cut(s)	299
TspDTI	ATGAA	2 cut(s)	76, 199
XapI	RAATTY	1 cut(s)	224
XspI	CTAG	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.