Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002271

Physical Location & Seq

Genomic Coordinates Forward (+)

45664995 .. 45665378

Gene Structure 384 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003208

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGAGTGGATACTCCTCATCAGCAGCAGTTCTGTTAGCAATGATGATGGCAATGTTCATCACCAAAACTGATTGCTTCAGCGTCAACCAGACAATCACCGTCTCCTCTACTTGGTGCGATGGCCTCAACGACGACTTGTCGTGCCTAACTGGACAGACTGATTTGGATTCGGACGAGTTCATGCTGGACTCCGAATTCAGTAGAAGAATCTTGACTGGCGGAGCTATAAGCTTCACTGCTGGCACTGTAAATCCTGGAAATGCTGTGTCGTGTGGCCGAGGCAACCCTCCAAAACCGTGCCACCCTCAGGGAAACTCGAATCCCCCTCCACCACAGTGCGCCGTGGCGGGTACCAATCGCGATTGCTACCACTATAACCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

128

Amino Acids

13.48

Weight (kDa)

4.56

Isoelectric Point (pI)

42.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002271)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g21290
prunus_persica	Prupe.5G044300_v2.0.a1
pyrus_communis	pycom17g06790
rosa_chinensis	RchiOBHm_Chr7g0208491 RchiOBHm_Chr7g0208531 RchiOBHm_Chr7g0208581 RchiOBHm_Chr7g0208601
rosa_laevigata	RLG00000003207 RLG00000003208 RLG00000003209 RLG00000003210 RLG00000003211
rosa_multiflora	Rmu_co8287091.1_g000001 Rmu_co8292411.1_g000001 Rmu_sc0007490.1_g000010 Rmu_sc0013240.1_g000006
rosa_roxburghii	Rroxscaffold_3G00250410 Rroxscaffold_3G00250430 Rroxscaffold_3G00250440 Rroxscaffold_3G00250450 Rroxscaffold_3G00250480 Rroxscaffold_3G00250490
rosa_rugosa	Rorug07G0104600 Rorug07G0104700 Rorug07G0104900 Rorug07G0105100
rosa_samantha	Rh7AG238900 Rh7AG239200 Rh7AG239600 Rh7AG239700 Rh7BG234400 Rh7BG234500 Rh7BG234700 Rh7BG235000 Rh7BG235100 Rh7CG254100 Rh7CG254300 Rh7CG254500 Rh7CG254600 Rh7DG244900 Rh7DG245200 Rh7DG245600 Rh7DG245700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	350
AccB1I	GGYRCC	1 cut(s)	350
AccII	CGCG	1 cut(s)	360
AciI	CCGC	2 cut(s)	219, 347
AcoI	YGGCCR	1 cut(s)	274
AcsI	RAATTY	1 cut(s)	194
AcuI	CTGAAG	1 cut(s)	61
AfaI	GTAC	1 cut(s)	352
AfiI	CCNNNNNNNGG	2 cut(s)	111, 307
AhdI	GACNNNNNGTC	1 cut(s)	136
AjnI	CCWGG	1 cut(s)	253
AleI	CACNNNNGTG	1 cut(s)	334
AluBI	AGCT	2 cut(s)	224, 231
AluI	AGCT	2 cut(s)	224, 231
Alw26I	GTCTC	1 cut(s)	106
AoxI	GGCC	2 cut(s)	121, 274
ApeKI	GCWGC	1 cut(s)	23
ApoI	RAATTY	1 cut(s)	194
Asp718I	GGTACC	1 cut(s)	350
AspLEI	GCGC	1 cut(s)	341
AsuHPI	GGTGA	2 cut(s)	52, 88
AxyI	CCTNAGG	1 cut(s)	306
BanI	GGYRCC	1 cut(s)	350
BbvI	GCAGC	1 cut(s)	35
BccI	CCATC	2 cut(s)	40, 113
BceAI	ACGGC	1 cut(s)	326
BciT130I	CCWGG	1 cut(s)	255
BcoDI	GTCTC	1 cut(s)	106
BisI	GCNGC	1 cut(s)	24
BlsI	GCNGC	1 cut(s)	25
Bme1390I	CCNGG	1 cut(s)	255
BmeRI	GACNNNNNGTC	1 cut(s)	136
BmiI	GGNNCC	1 cut(s)	352
BmrFI	CCNGG	1 cut(s)	255
BsaJI	CCNNGG	2 cut(s)	277, 342
Bsc4I	CCNNNNNNNGG	2 cut(s)	111, 307
Bse1I	ACTGG	3 cut(s)	154, 220, 379
Bse21I	CCTNAGG	1 cut(s)	306
Bse3DI	GCAATG	2 cut(s)	45, 57
BseBI	CCWGG	1 cut(s)	255
BseDI	CCNNGG	2 cut(s)	277, 342
BseLI	CCNNNNNNNGG	2 cut(s)	111, 307
BseMI	GCAATG	2 cut(s)	45, 57
BseMII	CTCAG	1 cut(s)	320
BseNI	ACTGG	3 cut(s)	154, 220, 379
BseRI	GAGGAG	2 cut(s)	4, 94
BseXI	GCAGC	1 cut(s)	35
Bsh1236I	CGCG	1 cut(s)	360
BshFI	GGCC	2 cut(s)	123, 276
BshNI	GGYRCC	1 cut(s)	350
BslI	CCNNNNNNNGG	2 cut(s)	111, 307
BsmAI	GTCTC	1 cut(s)	106
BsmBI	CGTCTC	1 cut(s)	106
BsnI	GGCC	2 cut(s)	123, 276
Bsp68I	TCGCGA	1 cut(s)	360
BspACI	CCGC	2 cut(s)	219, 347
BspANI	GGCC	2 cut(s)	123, 276
BspCNI	CTCAG	1 cut(s)	319
BspFNI	CGCG	1 cut(s)	360
BspLI	GGNNCC	1 cut(s)	352
BspT107I	GGYRCC	1 cut(s)	350
BsrDI	GCAATG	2 cut(s)	45, 57
BsrI	ACTGG	3 cut(s)	154, 220, 379
BssECI	CCNNGG	2 cut(s)	277, 342
Bst2UI	CCWGG	1 cut(s)	255
Bst4CI	ACNGT	4 cut(s)	100, 247, 297, 336
BstC8I	GCNNGC	1 cut(s)	241
BstDEI	CTNAG	1 cut(s)	306
BstDSI	CCRYGG	1 cut(s)	342
BstFNI	CGCG	1 cut(s)	360
BstHHI	GCGC	1 cut(s)	341
BstMAI	GTCTC	1 cut(s)	106
BstNI	CCWGG	1 cut(s)	255
BstSCI	CCNGG	1 cut(s)	253
BstUI	CGCG	1 cut(s)	360
BstV1I	GCAGC	1 cut(s)	35
Bsu36I	CCTNAGG	1 cut(s)	306
BsuRI	GGCC	2 cut(s)	123, 276
BtgI	CCRYGG	1 cut(s)	342
BtgZI	GCGATG	1 cut(s)	132
BtsI	GCAGTG	1 cut(s)	234
BtsIMutI	CAGTG	3 cut(s)	234, 243, 341
BtuMI	TCGCGA	1 cut(s)	360
Cac8I	GCNNGC	1 cut(s)	241
CfoI	GCGC	1 cut(s)	341
CseI	GACGC	1 cut(s)	70
Csp6I	GTAC	1 cut(s)	351
CviAII	CATG	1 cut(s)	181
CviJI	RGCY	4 cut(s)	123, 224, 231, 276
CviKI_1	RGCY	4 cut(s)	123, 224, 231, 276
CviQI	GTAC	1 cut(s)	351
DdeI	CTNAG	1 cut(s)	306
DriI	GACNNNNNGTC	1 cut(s)	136
EaeI	YGGCCR	1 cut(s)	274
Eam1105I	GACNNNNNGTC	1 cut(s)	136
EciI	GGCGGA	1 cut(s)	234
Eco57I	CTGAAG	1 cut(s)	61
Eco81I	CCTNAGG	1 cut(s)	306
EcoRI	GAATTC	1 cut(s)	194
EcoRII	CCWGG	1 cut(s)	253
Esp3I	CGTCTC	1 cut(s)	106
FaeI	CATG	1 cut(s)	184
FaiI	YATR	3 cut(s)	182, 227, 375
FatI	CATG	1 cut(s)	180
FauI	CCCGC	1 cut(s)	340
Fnu4HI	GCNGC	1 cut(s)	24
Fsp4HI	GCNGC	1 cut(s)	24
GlaI	GCGC	1 cut(s)	340
GluI	GCNGC	1 cut(s)	24
HaeIII	GGCC	2 cut(s)	123, 276
HgaI	GACGC	1 cut(s)	70
HhaI	GCGC	1 cut(s)	341
Hin1II	CATG	1 cut(s)	184
Hin6I	GCGC	1 cut(s)	339
HinP1I	GCGC	1 cut(s)	339
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HindIII	AAGCTT	1 cut(s)	229
HinfI	GANTC	4 cut(s)	167, 188, 207, 319
HphI	GGTGA	2 cut(s)	52, 88
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	2 cut(s)	172, 193
Hpy188III	TCNNGA	2 cut(s)	211, 359
Hpy8I	GTNNAC	1 cut(s)	85
Hpy99I	CGWCG	1 cut(s)	134
HpyCH4III	ACNGT	4 cut(s)	100, 247, 297, 336
HpyF3I	CTNAG	1 cut(s)	306
Hsp92II	CATG	1 cut(s)	184
HspAI	GCGC	1 cut(s)	339
KpnI	GGTACC	1 cut(s)	354
LmnI	GCTCC	1 cut(s)	221
LpnPI	CCDG	8 cut(s)	101, 135, 170, 201, 225, 240, 267, 293
Lsp1109I	GCAGC	1 cut(s)	35
MboII	GAAGA	1 cut(s)	216
MluCI	AATT	1 cut(s)	194
MlyI	GAGTC	1 cut(s)	182
MnlI	CCTC	7 cut(s)	25, 115, 134, 272, 297, 315, 336
MslI	CAYNNNNRTG	1 cut(s)	334
MspR9I	CCNGG	1 cut(s)	255
MvaI	CCWGG	1 cut(s)	255
MvnI	CGCG	1 cut(s)	360
NlaIII	CATG	1 cut(s)	184
NlaIV	GGNNCC	1 cut(s)	352
NmeAIII	GCCGAG	1 cut(s)	302
NruI	TCGCGA	1 cut(s)	360
OliI	CACNNNNGTG	1 cut(s)	334
PfeI	GAWTC	3 cut(s)	167, 207, 319
PfoI	TCCNGGA	1 cut(s)	253
PkrI	GCNGC	1 cut(s)	25
PleI	GAGTC	1 cut(s)	182
PpsI	GAGTC	1 cut(s)	182
Psp6I	CCWGG	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	253
PspN4I	GGNNCC	1 cut(s)	352
RruI	TCGCGA	1 cut(s)	360
RsaI	GTAC	1 cut(s)	352
RsaNI	GTAC	1 cut(s)	351
RseI	CAYNNNNRTG	1 cut(s)	334
SatI	GCNGC	1 cut(s)	24
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	1 cut(s)	255
SetI	ASST	2 cut(s)	226, 233
SmiMI	CAYNNNNRTG	1 cut(s)	334
Sse9I	AATT	1 cut(s)	194
SsiI	CCGC	2 cut(s)	219, 347
StyD4I	CCNGG	1 cut(s)	253
TaaI	ACNGT	4 cut(s)	100, 247, 297, 336
TaqI	TCGA	1 cut(s)	317
TasI	AATT	1 cut(s)	194
TfiI	GAWTC	3 cut(s)	167, 207, 319
TscAI	CASTG	3 cut(s)	241, 250, 341
TseI	GCWGC	1 cut(s)	23
TspDTI	ATGAA	2 cut(s)	46, 169
TspRI	CASTG	3 cut(s)	241, 250, 341
XapI	RAATTY	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.