Rroxscaffold_3G00250480

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0002271
Physical Location & Seq
Forward (+)
44284039 .. 44286896
2858 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00250480.1

Sequence Viewer

Length: 360 bp
ATGAGTCCCCATTCAGTAGCAGCGGTGATGATCCTGATCACCCTTGTAACCACAACTCACTGCATCAACAACACCATCACCTCTAGATCATCATCTTGGTGCGTTGGCGGCCGCACCGACGACCCCTCGTGCCTTGTCGGAGAGACTGACTTGGACTCGGATGAGTTCATGATGGATTCCGAAATCAGCCGAAGAATCCTGGCTGGAAATTCAGGCACTAAAAATGTTTTGGATCCTTCAAAGGCTTCGTCGTGTGACCGAAGCAATCCTCAATGCCACTCCAGTACGAAAAATCAGAACCCCCCAGGAGTAGACTGTGCCAAGGCTCAATATAATCGCGCCTGCCACCAATACCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

12.83

Weight (kDa)

6.01

Isoelectric Point (pI)

64.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 312
AccII CGCG 1 cut(s) 339
AciI CCGC 3 cut(s) 23, 108, 112
AclWI GGATC 3 cut(s) 25, 227, 240
AcoI YGGCCR 1 cut(s) 109
AcsI RAATTY 1 cut(s) 208
AfaI GTAC 1 cut(s) 286
AgsI TTSAA 1 cut(s) 240
AjnI CCWGG 2 cut(s) 198, 304
Alw26I GTCTC 1 cut(s) 137
AlwI GGATC 3 cut(s) 25, 227, 240
AoxI GGCC 1 cut(s) 109
ApeKI GCWGC 1 cut(s) 20
ApoI RAATTY 1 cut(s) 208
ArsI GACNNNNNNTTYG 2 cut(s) 233, 265
AspLEI GCGC 1 cut(s) 341
AsuHPI GGTGA 3 cut(s) 31, 37, 70
BamHI GGATCC 1 cut(s) 232
BauI CACGAG 1 cut(s) 127
BbvI GCAGC 1 cut(s) 32
BccI CCATC 2 cut(s) 83, 166
BciT130I CCWGG 2 cut(s) 200, 306
BclI TGATCA 1 cut(s) 36
BcoDI GTCTC 1 cut(s) 137
BfaI CTAG 1 cut(s) 84
BisI GCNGC 3 cut(s) 21, 109, 112
BlsI GCNGC 3 cut(s) 22, 110, 113
Bme1390I CCNGG 2 cut(s) 200, 306
BmiI GGNNCC 1 cut(s) 234
BmrFI CCNGG 2 cut(s) 200, 306
BmsI GCATC 1 cut(s) 72
BpmI CTGGAG 1 cut(s) 265
BsaBI GATNNNNATC 2 cut(s) 35, 91
BsaJI CCNNGG 2 cut(s) 304, 321
Bse1I ACTGG 1 cut(s) 282
Bse8I GATNNNNATC 2 cut(s) 35, 91
BseBI CCWGG 2 cut(s) 200, 306
BseDI CCNNGG 2 cut(s) 304, 321
BseGI GGATG 1 cut(s) 166
BseJI GATNNNNATC 2 cut(s) 35, 91
BseNI ACTGG 1 cut(s) 282
BseX3I CGGCCG 1 cut(s) 109
BseXI GCAGC 1 cut(s) 32
Bsh1236I CGCG 1 cut(s) 339
Bsh1285I CGRYCG 1 cut(s) 112
BshFI GGCC 1 cut(s) 111
BsiEI CGRYCG 1 cut(s) 112
BsmAI GTCTC 1 cut(s) 137
BsnI GGCC 1 cut(s) 111
Bsp143I GATC 4 cut(s) 30, 36, 86, 232
BspACI CCGC 3 cut(s) 23, 108, 112
BspANI GGCC 1 cut(s) 111
BspFNI CGCG 1 cut(s) 339
BspHI TCATGA 1 cut(s) 168
BspLI GGNNCC 1 cut(s) 234
BspPI GGATC 3 cut(s) 25, 227, 240
BsrI ACTGG 1 cut(s) 282
BssECI CCNNGG 2 cut(s) 304, 321
BssMI GATC 4 cut(s) 30, 36, 86, 232
BssSI CACGAG 1 cut(s) 127
BssT1I CCWWGG 1 cut(s) 321
Bst2BI CACGAG 1 cut(s) 127
Bst2UI CCWGG 2 cut(s) 200, 306
Bst4CI ACNGT 1 cut(s) 317
BstC8I GCNNGC 1 cut(s) 343
BstF5I GGATG 1 cut(s) 166
BstFNI CGCG 1 cut(s) 339
BstHHI GCGC 1 cut(s) 341
BstKTI GATC 4 cut(s) 33, 39, 89, 235
BstMAI GTCTC 1 cut(s) 137
BstMBI GATC 4 cut(s) 30, 36, 86, 232
BstMCI CGRYCG 1 cut(s) 112
BstMWI GCNNNNNNNGC 1 cut(s) 108
BstNI CCWGG 2 cut(s) 200, 306
BstSCI CCNGG 2 cut(s) 198, 304
BstUI CGCG 1 cut(s) 339
BstV1I GCAGC 1 cut(s) 32
BstX2I RGATCY 1 cut(s) 232
BstYI RGATCY 1 cut(s) 232
BstZI CGGCCG 1 cut(s) 109
BsuRI GGCC 1 cut(s) 111
BtsCI GGATG 1 cut(s) 166
BtsI GCAGTG 1 cut(s) 58
BtsIMutI CAGTG 1 cut(s) 58
Cac8I GCNNGC 1 cut(s) 343
CciI TCATGA 1 cut(s) 168
CciNI GCGGCCGC 1 cut(s) 109
CfoI GCGC 1 cut(s) 341
Csp6I GTAC 1 cut(s) 285
CviAII CATG 1 cut(s) 169
CviJI RGCY 5 cut(s) 111, 189, 203, 245, 326
CviKI_1 RGCY 5 cut(s) 111, 189, 203, 245, 326
CviQI GTAC 1 cut(s) 285
DpnI GATC 4 cut(s) 32, 38, 88, 234
DpnII GATC 4 cut(s) 30, 36, 86, 232
EaeI YGGCCR 1 cut(s) 109
EagI CGGCCG 1 cut(s) 109
EclXI CGGCCG 1 cut(s) 109
Eco130I CCWWGG 1 cut(s) 321
Eco52I CGGCCG 1 cut(s) 109
EcoRII CCWGG 2 cut(s) 198, 304
EcoT14I CCWWGG 1 cut(s) 321
ErhI CCWWGG 1 cut(s) 321
FaeI CATG 1 cut(s) 172
FaiI YATR 2 cut(s) 170, 333
FatI CATG 1 cut(s) 168
FbaI TGATCA 1 cut(s) 36
FblI GTMKAC 1 cut(s) 312
Fnu4HI GCNGC 3 cut(s) 21, 109, 112
FokI GGATG 1 cut(s) 173
Fsp4HI GCNGC 3 cut(s) 21, 109, 112
FspBI CTAG 1 cut(s) 84
GlaI GCGC 1 cut(s) 340
GluI GCNGC 3 cut(s) 21, 109, 112
GsuI CTGGAG 1 cut(s) 265
HaeIII GGCC 1 cut(s) 111
HhaI GCGC 1 cut(s) 341
Hin1II CATG 1 cut(s) 172
Hin6I GCGC 1 cut(s) 339
HinP1I GCGC 1 cut(s) 339
HinfI GANTC 4 cut(s) 4, 155, 176, 195
HphI GGTGA 3 cut(s) 31, 37, 70
Hpy166II GTNNAC 1 cut(s) 313
Hpy188I TCNGA 4 cut(s) 140, 160, 181, 297
Hpy188III TCNNGA 3 cut(s) 34, 84, 169
Hpy8I GTNNAC 1 cut(s) 313
Hpy99I CGWCG 2 cut(s) 122, 253
HpyAV CCTTC 1 cut(s) 246
HpyCH4III ACNGT 1 cut(s) 317
HpyCH4V TGCA 1 cut(s) 63
HpyF10VI GCNNNNNNNGC 1 cut(s) 108
Hsp92II CATG 1 cut(s) 172
HspAI GCGC 1 cut(s) 339
Ksp22I TGATCA 1 cut(s) 36
Kzo9I GATC 4 cut(s) 30, 36, 86, 232
LpnPI CCDG 9 cut(s) 47, 185, 189, 198, 212, 291, 295, 318, 355
Lsp1109I GCAGC 1 cut(s) 32
LweI GCATC 1 cut(s) 72
MaeI CTAG 1 cut(s) 84
MaeIII GTNAC 2 cut(s) 46, 254
MalI GATC 4 cut(s) 32, 38, 88, 234
MboI GATC 4 cut(s) 30, 36, 86, 232
MboII GAAGA 1 cut(s) 204
MflI RGATCY 1 cut(s) 232
MluCI AATT 1 cut(s) 208
MlyI GAGTC 2 cut(s) 13, 149
MmeI TCCRAC 1 cut(s) 118
MnlI CCTC 3 cut(s) 91, 136, 279
MslI CAYNNNNRTG 1 cut(s) 97
MspA1I CMGCKG 1 cut(s) 23
MspR9I CCNGG 2 cut(s) 200, 306
MvaI CCWGG 2 cut(s) 200, 306
MvnI CGCG 1 cut(s) 339
MwoI GCNNNNNNNGC 1 cut(s) 108
NdeII GATC 4 cut(s) 30, 36, 86, 232
NlaIII CATG 1 cut(s) 172
NlaIV GGNNCC 1 cut(s) 234
NmuCI GTSAC 1 cut(s) 254
NotI GCGGCCGC 1 cut(s) 109
PagI TCATGA 1 cut(s) 168
PfeI GAWTC 2 cut(s) 176, 195
PkrI GCNGC 3 cut(s) 22, 110, 113
PleI GAGTC 2 cut(s) 12, 149
PpsI GAGTC 2 cut(s) 12, 149
Psp6I CCWGG 2 cut(s) 198, 304
PspGI CCWGG 2 cut(s) 198, 304
PspN4I GGNNCC 1 cut(s) 234
PsuI RGATCY 1 cut(s) 232
RsaI GTAC 1 cut(s) 286
RsaNI GTAC 1 cut(s) 285
RseI CAYNNNNRTG 1 cut(s) 97
SatI GCNGC 3 cut(s) 21, 109, 112
Sau3AI GATC 4 cut(s) 30, 36, 86, 232
SchI GAGTC 2 cut(s) 13, 149
ScrFI CCNGG 2 cut(s) 200, 306
SetI ASST 1 cut(s) 83
SfaNI GCATC 1 cut(s) 72
SmiMI CAYNNNNRTG 1 cut(s) 97
Sse9I AATT 1 cut(s) 208
SsiI CCGC 3 cut(s) 23, 108, 112
SspMI CTAG 1 cut(s) 84
StyD4I CCNGG 2 cut(s) 198, 304
StyI CCWWGG 1 cut(s) 321
TaaI ACNGT 1 cut(s) 317
TaqII GACCGA 1 cut(s) 273
TasI AATT 1 cut(s) 208
TauI GCSGC 2 cut(s) 111, 114
TfiI GAWTC 2 cut(s) 176, 195
TscAI CASTG 1 cut(s) 65
TseFI GTSAC 1 cut(s) 254
TseI GCWGC 1 cut(s) 20
Tsp45I GTSAC 1 cut(s) 254
TspDTI ATGAA 1 cut(s) 157
TspRI CASTG 1 cut(s) 65
XapI RAATTY 1 cut(s) 208
XbaI TCTAGA 1 cut(s) 83
XmiI GTMKAC 1 cut(s) 312
XspI CTAG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.