Rh7DG245700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0002271
Physical Location & Seq
Reverse (-)
25352097 .. 25352429
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG245700.1

Sequence Viewer

Length: 333 bp
ATGTTCATCACCAAAACTGATTGCTTCAGCATCAACCAGACAATCACCGTCTCCTCCACTTGGTGCGATGGCCTCAACGACGACTTGTCGTGCCTAATTGGACAGACTGATTTGGATTCGGACGAGTTCATGCTGGACTCCGAGTTCAGCAGAAGAATCTTGGGCGGCGGAGGTATAAGCTTCACTGCTGGCACTGGAAATGCTGGACATGCTGTGTCGTGTACCCGAGGCAACCCTCCAAAACCGTGCCACCCTGAGGGAAACTCGAACCCCCCTCCACCACAATGCGCCGTGGCGGGTACCAATCGCGATTGCTACCGCTATAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

11.78

Weight (kDa)

5.12

Isoelectric Point (pI)

40.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 299
AccB1I GGYRCC 1 cut(s) 299
AccII CGCG 1 cut(s) 309
AciI CCGC 4 cut(s) 165, 168, 296, 319
AcuI CTGAAG 1 cut(s) 10
AdeI CACNNNGTG 1 cut(s) 63
AfaI GTAC 2 cut(s) 223, 301
AfiI CCNNNNNNNGG 2 cut(s) 60, 256
AhdI GACNNNNNGTC 1 cut(s) 85
AloI GAACNNNNNNTCC 2 cut(s) 128, 160
AluBI AGCT 1 cut(s) 180
AluI AGCT 1 cut(s) 180
Alw26I GTCTC 1 cut(s) 55
Ama87I CYCGRG 1 cut(s) 225
AoxI GGCC 1 cut(s) 70
Asp718I GGTACC 1 cut(s) 299
AspLEI GCGC 1 cut(s) 290
AsuHPI GGTGA 1 cut(s) 37
AvaI CYCGRG 1 cut(s) 225
AxyI CCTNAGG 1 cut(s) 255
BanI GGYRCC 1 cut(s) 299
BccI CCATC 1 cut(s) 62
BceAI ACGGC 1 cut(s) 275
BcoDI GTCTC 1 cut(s) 55
BisI GCNGC 1 cut(s) 166
BlsI GCNGC 1 cut(s) 167
BmeRI GACNNNNNGTC 1 cut(s) 85
BmeT110I CYCGRG 1 cut(s) 225
BmiI GGNNCC 1 cut(s) 301
BmsI GCATC 1 cut(s) 39
BplI GAGNNNNNCTC 2 cut(s) 248, 280
BsaJI CCNNGG 2 cut(s) 226, 291
Bsc4I CCNNNNNNNGG 2 cut(s) 60, 256
Bse1I ACTGG 1 cut(s) 199
Bse21I CCTNAGG 1 cut(s) 255
BseDI CCNNGG 2 cut(s) 226, 291
BseLI CCNNNNNNNGG 2 cut(s) 60, 256
BseMII CTCAG 1 cut(s) 246
BseNI ACTGG 1 cut(s) 199
BseRI GAGGAG 1 cut(s) 43
Bsh1236I CGCG 1 cut(s) 309
BshFI GGCC 1 cut(s) 72
BshNI GGYRCC 1 cut(s) 299
BsiHKCI CYCGRG 1 cut(s) 225
BslI CCNNNNNNNGG 2 cut(s) 60, 256
BsmAI GTCTC 1 cut(s) 55
BsmBI CGTCTC 1 cut(s) 55
BsnI GGCC 1 cut(s) 72
BsoBI CYCGRG 1 cut(s) 225
Bsp68I TCGCGA 1 cut(s) 309
BspACI CCGC 4 cut(s) 165, 168, 296, 319
BspANI GGCC 1 cut(s) 72
BspCNI CTCAG 1 cut(s) 247
BspFNI CGCG 1 cut(s) 309
BspLI GGNNCC 1 cut(s) 301
BspT107I GGYRCC 1 cut(s) 299
BsrI ACTGG 1 cut(s) 199
BssECI CCNNGG 2 cut(s) 226, 291
Bst4CI ACNGT 2 cut(s) 49, 246
BstC8I GCNNGC 1 cut(s) 190
BstDEI CTNAG 1 cut(s) 255
BstDSI CCRYGG 1 cut(s) 291
BstFNI CGCG 1 cut(s) 309
BstHHI GCGC 1 cut(s) 290
BstMAI GTCTC 1 cut(s) 55
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstNSI RCATGY 1 cut(s) 212
BstUI CGCG 1 cut(s) 309
Bsu36I CCTNAGG 1 cut(s) 255
BsuRI GGCC 1 cut(s) 72
BtgI CCRYGG 1 cut(s) 291
BtgZI GCGATG 1 cut(s) 81
BtsI GCAGTG 1 cut(s) 183
BtsIMutI CAGTG 2 cut(s) 183, 192
BtuMI TCGCGA 1 cut(s) 309
Cac8I GCNNGC 1 cut(s) 190
CfoI GCGC 1 cut(s) 290
Csp6I GTAC 2 cut(s) 222, 300
CviAII CATG 2 cut(s) 130, 209
CviJI RGCY 2 cut(s) 72, 180
CviKI_1 RGCY 2 cut(s) 72, 180
CviQI GTAC 2 cut(s) 222, 300
DdeI CTNAG 1 cut(s) 255
DraIII CACNNNGTG 1 cut(s) 63
DriI GACNNNNNGTC 1 cut(s) 85
Eam1105I GACNNNNNGTC 1 cut(s) 85
EciI GGCGGA 1 cut(s) 183
Eco57I CTGAAG 1 cut(s) 10
Eco81I CCTNAGG 1 cut(s) 255
Eco88I CYCGRG 1 cut(s) 225
Esp3I CGTCTC 1 cut(s) 55
FaeI CATG 2 cut(s) 133, 212
FaiI YATR 4 cut(s) 131, 176, 210, 324
FatI CATG 2 cut(s) 129, 208
FauI CCCGC 1 cut(s) 289
Fnu4HI GCNGC 1 cut(s) 166
Fsp4HI GCNGC 1 cut(s) 166
GlaI GCGC 1 cut(s) 289
GluI GCNGC 1 cut(s) 166
HaeIII GGCC 1 cut(s) 72
HhaI GCGC 1 cut(s) 290
Hin1II CATG 2 cut(s) 133, 212
Hin6I GCGC 1 cut(s) 288
HinP1I GCGC 1 cut(s) 288
HindIII AAGCTT 1 cut(s) 178
HinfI GANTC 3 cut(s) 116, 137, 156
HphI GGTGA 1 cut(s) 37
Hpy166II GTNNAC 1 cut(s) 222
Hpy188I TCNGA 2 cut(s) 121, 142
Hpy188III TCNNGA 1 cut(s) 308
Hpy8I GTNNAC 1 cut(s) 222
Hpy99I CGWCG 1 cut(s) 83
HpyCH4III ACNGT 2 cut(s) 49, 246
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
HpyF3I CTNAG 1 cut(s) 255
Hsp92II CATG 2 cut(s) 133, 212
HspAI GCGC 1 cut(s) 288
KpnI GGTACC 1 cut(s) 303
LpnPI CCDG 6 cut(s) 50, 119, 174, 180, 189, 267
LweI GCATC 1 cut(s) 39
MboII GAAGA 1 cut(s) 165
MluCI AATT 1 cut(s) 96
MlyI GAGTC 1 cut(s) 131
MnlI CCTC 7 cut(s) 64, 83, 164, 221, 246, 250, 285
MslI CAYNNNNRTG 1 cut(s) 283
MvnI CGCG 1 cut(s) 309
MwoI GCNNNNNNNGC 1 cut(s) 209
NlaIII CATG 2 cut(s) 133, 212
NlaIV GGNNCC 1 cut(s) 301
NruI TCGCGA 1 cut(s) 309
NspI RCATGY 1 cut(s) 212
PfeI GAWTC 2 cut(s) 116, 156
PkrI GCNGC 1 cut(s) 167
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
PspN4I GGNNCC 1 cut(s) 301
RruI TCGCGA 1 cut(s) 309
RsaI GTAC 2 cut(s) 223, 301
RsaNI GTAC 2 cut(s) 222, 300
RseI CAYNNNNRTG 1 cut(s) 283
SatI GCNGC 1 cut(s) 166
SchI GAGTC 1 cut(s) 131
SetI ASST 2 cut(s) 175, 182
SfaNI GCATC 1 cut(s) 39
SmiMI CAYNNNNRTG 1 cut(s) 283
Sse9I AATT 1 cut(s) 96
SsiI CCGC 4 cut(s) 165, 168, 296, 319
TaaI ACNGT 2 cut(s) 49, 246
TaqI TCGA 1 cut(s) 266
TasI AATT 1 cut(s) 96
TauI GCSGC 1 cut(s) 168
TfiI GAWTC 2 cut(s) 116, 156
TscAI CASTG 2 cut(s) 190, 199
TspDTI ATGAA 1 cut(s) 118
TspRI CASTG 2 cut(s) 190, 199
XceI RCATGY 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.