RLG00000003207

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0002271
Physical Location & Seq
Forward (+)
45644276 .. 45644683
408 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003207

Sequence Viewer

Length: 408 bp
ATGGCAGTTGGTGTAGTGAAGATGAGCGGACGCTCCTCAGCAGCAGCAGTTTTGTTAGCAATGATGATGGTGATGATGACTATGTTCATCACCAAAACTGATTGCTTCAGCATCAACCAGACAATCACTGTCTCCTCGACTTGGTGCGATGGCCTCGACGACTTGTCGTGCCTAATTGGACAGACTGATTTGGATTCGGACGAGTTCATGCTGGACTCCGAATTCAGCAGAAGAATCCTGGCTGCAAGTCAAGGATCTTACTCTGGTAAGGCCTTGAATGCTGGAACGGCTGTGTCGTGTGACCGAAAGGGGTTTCCTTCGTGCCACACTAGCGGGGCAAACAAGAAACCCCCACCACCACACTGCAACAAGGCGCCTACCAATCGCGAATGCTACGGCTATTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

14.44

Weight (kDa)

6.69

Isoelectric Point (pI)

54.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 373
AccBSI CCGCTC 1 cut(s) 27
AccII CGCG 1 cut(s) 387
AciI CCGC 2 cut(s) 27, 333
AclWI GGATC 1 cut(s) 262
AcsI RAATTY 1 cut(s) 221
AcuI CTGAAG 1 cut(s) 91
AcyI GRCGYC 1 cut(s) 374
AfiI CCNNNNNNNGG 1 cut(s) 141
AgsI TTSAA 1 cut(s) 277
AhdI GACNNNNNGTC 1 cut(s) 163
AjnI CCWGG 1 cut(s) 237
Alw26I GTCTC 1 cut(s) 136
AlwI GGATC 1 cut(s) 262
AoxI GGCC 2 cut(s) 151, 270
ApeKI GCWGC 3 cut(s) 41, 44, 242
ApoI RAATTY 1 cut(s) 221
AspLEI GCGC 1 cut(s) 376
AsuHPI GGTGA 2 cut(s) 82, 82
BanI GGYRCC 1 cut(s) 373
BbvCI CCTCAGC 1 cut(s) 37
BbvI GCAGC 3 cut(s) 53, 56, 229
BccI CCATC 2 cut(s) 61, 143
BceAI ACGGC 1 cut(s) 303
BciT130I CCWGG 1 cut(s) 239
BcoDI GTCTC 1 cut(s) 136
BfaI CTAG 1 cut(s) 330
BfoI RGCGCY 1 cut(s) 377
BisI GCNGC 3 cut(s) 42, 45, 243
BlsI GCNGC 3 cut(s) 43, 46, 244
Bme1390I CCNGG 1 cut(s) 239
BmeRI GACNNNNNGTC 1 cut(s) 163
BmiI GGNNCC 1 cut(s) 375
BmrFI CCNGG 1 cut(s) 239
BmsI GCATC 1 cut(s) 120
Bpu10I CCTNAGC 1 cut(s) 37
BsaHI GRCGYC 1 cut(s) 374
Bsc4I CCNNNNNNNGG 1 cut(s) 141
Bse3DI GCAATG 1 cut(s) 66
BseBI CCWGG 1 cut(s) 239
BseLI CCNNNNNNNGG 1 cut(s) 141
BseMI GCAATG 1 cut(s) 66
BseMII CTCAG 1 cut(s) 51
BseRI GAGGAG 2 cut(s) 25, 124
BseXI GCAGC 3 cut(s) 53, 56, 229
Bsh1236I CGCG 1 cut(s) 387
BshFI GGCC 2 cut(s) 153, 272
BshNI GGYRCC 1 cut(s) 373
BslI CCNNNNNNNGG 1 cut(s) 141
BsmAI GTCTC 1 cut(s) 136
BsmI GAATGC 2 cut(s) 283, 395
BsnI GGCC 2 cut(s) 153, 272
Bsp143I GATC 1 cut(s) 254
Bsp68I TCGCGA 1 cut(s) 387
BspACI CCGC 2 cut(s) 27, 333
BspANI GGCC 2 cut(s) 153, 272
BspCNI CTCAG 1 cut(s) 50
BspFNI CGCG 1 cut(s) 387
BspLI GGNNCC 1 cut(s) 375
BspPI GGATC 1 cut(s) 262
BspT107I GGYRCC 1 cut(s) 373
BsrBI CCGCTC 1 cut(s) 27
BsrDI GCAATG 1 cut(s) 66
BssMI GATC 1 cut(s) 254
BssNI GRCGYC 1 cut(s) 374
Bst2UI CCWGG 1 cut(s) 239
Bst4CI ACNGT 1 cut(s) 130
BstACI GRCGYC 1 cut(s) 374
BstDEI CTNAG 1 cut(s) 37
BstFNI CGCG 1 cut(s) 387
BstH2I RGCGCY 1 cut(s) 377
BstHHI GCGC 1 cut(s) 376
BstKTI GATC 1 cut(s) 257
BstMAI GTCTC 1 cut(s) 136
BstMBI GATC 1 cut(s) 254
BstMWI GCNNNNNNNGC 3 cut(s) 278, 287, 330
BstNI CCWGG 1 cut(s) 239
BstSCI CCNGG 1 cut(s) 237
BstUI CGCG 1 cut(s) 387
BstV1I GCAGC 3 cut(s) 53, 56, 229
BstX2I RGATCY 1 cut(s) 254
BstYI RGATCY 1 cut(s) 254
BsuRI GGCC 2 cut(s) 153, 272
BtgZI GCGATG 1 cut(s) 162
BtsI GCAGTG 1 cut(s) 361
BtsIMutI CAGTG 2 cut(s) 126, 361
BtuMI TCGCGA 1 cut(s) 387
CfoI GCGC 1 cut(s) 376
CseI GACGC 1 cut(s) 39
CviAII CATG 1 cut(s) 208
CviJI RGCY 5 cut(s) 153, 242, 272, 290, 399
CviKI_1 RGCY 5 cut(s) 153, 242, 272, 290, 399
DdeI CTNAG 1 cut(s) 37
DinI GGCGCC 1 cut(s) 375
DpnI GATC 1 cut(s) 256
DpnII GATC 1 cut(s) 254
DriI GACNNNNNGTC 1 cut(s) 163
Eam1105I GACNNNNNGTC 1 cut(s) 163
Eco147I AGGCCT 1 cut(s) 272
Eco57I CTGAAG 1 cut(s) 91
EcoRI GAATTC 1 cut(s) 221
EcoRII CCWGG 1 cut(s) 237
EgeI GGCGCC 1 cut(s) 375
EheI GGCGCC 1 cut(s) 375
FaeI CATG 1 cut(s) 211
FaiI YATR 2 cut(s) 83, 209
FatI CATG 1 cut(s) 207
FauI CCCGC 1 cut(s) 326
Fnu4HI GCNGC 3 cut(s) 42, 45, 243
Fsp4HI GCNGC 3 cut(s) 42, 45, 243
FspBI CTAG 1 cut(s) 330
GlaI GCGC 1 cut(s) 375
GluI GCNGC 3 cut(s) 42, 45, 243
HaeII RGCGCY 1 cut(s) 377
HaeIII GGCC 2 cut(s) 153, 272
HgaI GACGC 1 cut(s) 39
HhaI GCGC 1 cut(s) 376
Hin1I GRCGYC 1 cut(s) 374
Hin1II CATG 1 cut(s) 211
Hin6I GCGC 1 cut(s) 374
HinP1I GCGC 1 cut(s) 374
HinfI GANTC 3 cut(s) 194, 215, 234
HphI GGTGA 2 cut(s) 82, 82
Hpy188I TCNGA 2 cut(s) 199, 220
Hpy188III TCNNGA 1 cut(s) 386
Hpy99I CGWCG 1 cut(s) 161
HpyAV CCTTC 1 cut(s) 327
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4V TGCA 2 cut(s) 245, 366
HpyF10VI GCNNNNNNNGC 3 cut(s) 278, 287, 330
HpyF3I CTNAG 1 cut(s) 37
Hsp92I GRCGYC 1 cut(s) 374
Hsp92II CATG 1 cut(s) 211
HspAI GCGC 1 cut(s) 374
KasI GGCGCC 1 cut(s) 373
Kzo9I GATC 1 cut(s) 254
LmnI GCTCC 1 cut(s) 38
LpnPI CCDG 6 cut(s) 131, 197, 224, 249, 251, 267
Lsp1109I GCAGC 3 cut(s) 53, 56, 229
LweI GCATC 1 cut(s) 120
MaeI CTAG 1 cut(s) 330
MaeIII GTNAC 1 cut(s) 299
MalI GATC 1 cut(s) 256
MbiI CCGCTC 1 cut(s) 27
MboI GATC 1 cut(s) 254
MboII GAAGA 2 cut(s) 31, 243
MflI RGATCY 1 cut(s) 254
MluCI AATT 2 cut(s) 174, 221
Mly113I GGCGCC 1 cut(s) 374
MlyI GAGTC 1 cut(s) 209
MnlI CCTC 3 cut(s) 46, 145, 164
MspR9I CCNGG 1 cut(s) 239
Mva1269I GAATGC 2 cut(s) 283, 395
MvaI CCWGG 1 cut(s) 239
MvnI CGCG 1 cut(s) 387
MwoI GCNNNNNNNGC 3 cut(s) 278, 287, 330
NarI GGCGCC 1 cut(s) 374
NdeII GATC 1 cut(s) 254
NlaIII CATG 1 cut(s) 211
NlaIV GGNNCC 1 cut(s) 375
NmuCI GTSAC 1 cut(s) 299
NruI TCGCGA 1 cut(s) 387
PceI AGGCCT 1 cut(s) 272
PcsI WCGNNNNNNNCGW 1 cut(s) 293
PctI GAATGC 2 cut(s) 283, 395
PfeI GAWTC 2 cut(s) 194, 234
PkrI GCNGC 3 cut(s) 43, 46, 244
PleI GAGTC 1 cut(s) 209
PluTI GGCGCC 1 cut(s) 377
PpsI GAGTC 1 cut(s) 209
Psp6I CCWGG 1 cut(s) 237
PspGI CCWGG 1 cut(s) 237
PspN4I GGNNCC 1 cut(s) 375
PsuI RGATCY 1 cut(s) 254
RruI TCGCGA 1 cut(s) 387
SatI GCNGC 3 cut(s) 42, 45, 243
Sau3AI GATC 1 cut(s) 254
SchI GAGTC 1 cut(s) 209
ScrFI CCNGG 1 cut(s) 239
SfaNI GCATC 1 cut(s) 120
SfoI GGCGCC 1 cut(s) 375
Sse9I AATT 2 cut(s) 174, 221
SseBI AGGCCT 1 cut(s) 272
SsiI CCGC 2 cut(s) 27, 333
SspDI GGCGCC 1 cut(s) 373
SspMI CTAG 1 cut(s) 330
StuI AGGCCT 1 cut(s) 272
StyD4I CCNGG 1 cut(s) 237
TaaI ACNGT 1 cut(s) 130
TaqI TCGA 2 cut(s) 137, 156
TaqII GACCGA 1 cut(s) 318
TasI AATT 2 cut(s) 174, 221
TfiI GAWTC 2 cut(s) 194, 234
TscAI CASTG 2 cut(s) 133, 368
TseFI GTSAC 1 cut(s) 299
TseI GCWGC 3 cut(s) 41, 44, 242
Tsp45I GTSAC 1 cut(s) 299
TspDTI ATGAA 2 cut(s) 76, 196
TspRI CASTG 2 cut(s) 133, 368
XapI RAATTY 1 cut(s) 221
XspI CTAG 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.