Rorug07G0104700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0002271
Physical Location & Seq
Reverse (-)
8232068 .. 8235383
3316 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0104700.1

Sequence Viewer

Length: 1626 bp
ATGAATAATAATAATAATAATAATCAGGCCAAGAATGTGGCAGTGCCGCCCCATTTTGGCAATCCCGGGGCTGTGCCGCAATCTATTCCCATTAACCACCAGCCGCATCTTCTCTCTCAGACACAACCTCAAGCACAAGGTGCATCGCATTTCCCTGGGCACTTTCAGTTGTCTGAGCCCCAAGCGCAGGCACTTGCACAGGCACAGTATGTGAATGCTCATGCACAAGCTCAAAATCAAGCCGCCCATGCCCAATTTGTTCAGTTGCAAGCTCAAGCTCAGTCTCTTGCCCAATTGCATAATGCCAGTCCGGGTGTTTCGTCACCCTCCATAGCAACGCCAAGCACGGGAACTGCCAAGCGGGCTAACCAGAAGCCACCTTCTCGGCCTCAAGGTTCATCTCAGGCCAATACAGGTCCACTGTTTAAAAACATGGAGCTTACTCCAGCTGCTCGTAGAAAGAAGCGAAAGCTACCTGATAAACAGATACCAGATAAAGTGGCTGCACTTCTGCCAGAGTCTGGTCTATATACTCAGTTGCTTGAATTTGAGGCTCGTGTTGATGCTGCTTTGGCAAGAAAGAAGGTTGACATCCAGGAGTCACTTAAATGTCCTCCCCGTGTTCAAAAGACTCTTCGAGTTTATGTATTCAACACCTTTGAGAACCAGACACCAACAAATCCTGAGAAGAAGGATGCACATTCCCCTACTTGGTCTCTTAAGATAATTGGGAGGCTATTGGAAGATGGGAGGGATCCTGTGGTGGCTGGAATGCCACAGAAGTCAAGGGTTAAATTTTCATCCCTCTTCAAGAAAATTACCATATACTTGGACCAAAGCCTCTATCCAGACAACCCTGTGATTTTGTGGGAAAGTGCTCGTTCACCTGCTCTTCATGATGGCTTTGAGGTGAAGAGAAAAGGGGATAAGGAGTTTAGTGCAGTAATACGATTAGAGATGAATTATGTGCCCGAGAAATTTAAACTTTCACCAGCTCTGACTGAAGTTCTGGGAATTGAAACGGAGACTCGGGCAAGAGTTATTGCTGCTATTTGGCATTATGTGAAAGCCCGGAAGTTGCAGAACCCAAATGACCCTACCTTCTTCATGTGTGATCCCCCTCTGCAGAAAGTTTTTGGAGAAGAGAAGATGAAGTTTTCTATGGTTTCACAAAAAATATCAATGCACTTATCTCCTCCACAGCCTATACATATAGAGCACAAAATGAAACTTTCAGGAAACTGTCCAGCTGGAACTACTTGCTATGATATACTGGTTGATGTACCTACGCCGTTAGAGAAGGAAATGTCTGCATTCTTGGCAAGCACTGAGAGGAACAAAGAGATTGATGCTTGTGATGAATTGATCTGTGCTTCTATAAAAAAAATCCATGAACATCGTCGGCGGCGGGCTTTCTTTCTTGGTTTCAGTCAGTCTCCAGCAGAGTTTATTAATACTCTGATTGCTTCCCAGAGCAAGGACCTAAAGCTTGTTGCTGGAGATGCTAGTCGTAATGCGGAAAAGGAGCGCCGCTCAGATTTCTATAATCAACCCTGGGTTGAGGATGCTGTAATTCGTTACCTGAACCGCAAGTCTGCTGGAAGTGATGCTCCTGGAAGCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

541

Amino Acids

60.2

Weight (kDa)

9.46

Isoelectric Point (pI)

55.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIB PF02201 325 - 397 1.8e-24 SWIB/MDM2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 895
Acc36I ACCTGC 1 cut(s) 895
AccB7I CCANNNNNTGG 1 cut(s) 521
AccBSI CCGCTC 1 cut(s) 1533
AclWI GGATC 3 cut(s) 749, 762, 1109
AcsI RAATTY 3 cut(s) 545, 794, 977
AcuI CTGAAG 1 cut(s) 1023
AdeI CACNNNGTG 1 cut(s) 140
AfaI GTAC 1 cut(s) 1284
AfiI CCNNNNNNNGG 6 cut(s) 56, 187, 347, 521, 711, 1477
AflII CTTAAG 1 cut(s) 719
AgsI TTSAA 5 cut(s) 545, 626, 652, 811, 1019
AjnI CCWGG 4 cut(s) 154, 594, 1553, 1612
AluBI AGCT 9 cut(s) 230, 272, 278, 439, 449, 472, 995, 1250, 1489
AluI AGCT 9 cut(s) 230, 272, 278, 439, 449, 472, 995, 1250, 1489
Alw21I GWGCWC 2 cut(s) 880, 1221
Alw26I GTCTC 4 cut(s) 288, 720, 1019, 1440
AlwI GGATC 3 cut(s) 749, 762, 1109
AlwNI CAGNNNCTG 1 cut(s) 521
Ama87I CYCGRG 3 cut(s) 65, 971, 1029
AoxI GGCC 3 cut(s) 27, 386, 405
ApeKI GCWGC 4 cut(s) 449, 503, 566, 1046
ApoI RAATTY 3 cut(s) 545, 794, 977
AseI ATTAAT 1 cut(s) 1452
AspLEI GCGC 2 cut(s) 187, 1530
AspS9I GGNCC 3 cut(s) 416, 832, 1480
AsuC2I CCSGG 4 cut(s) 66, 67, 312, 1072
AsuHPI GGTGA 4 cut(s) 315, 876, 922, 981
AvaI CYCGRG 3 cut(s) 65, 971, 1029
AvaII GGWCC 3 cut(s) 416, 832, 1480
BaeGI GKGCMC 2 cut(s) 162, 972
BamHI GGATCC 1 cut(s) 754
BanII GRGCYC 1 cut(s) 180
BauI CACGAG 1 cut(s) 555
Bbv12I GWGCWC 2 cut(s) 880, 1221
BbvI GCAGC 4 cut(s) 436, 490, 553, 1033
BccI CCATC 2 cut(s) 740, 893
BceAI ACGGC 1 cut(s) 1276
BciT130I CCWGG 4 cut(s) 156, 596, 1555, 1614
BcnI CCSGG 4 cut(s) 66, 67, 312, 1072
BcoDI GTCTC 4 cut(s) 288, 720, 1019, 1440
BfaI CTAG 1 cut(s) 1506
BfmI CTRYAG 1 cut(s) 1124
BfoI RGCGCY 1 cut(s) 1531
BfrI CTTAAG 1 cut(s) 719
BfuAI ACCTGC 1 cut(s) 895
BglI GCCNNNNNGGC 1 cut(s) 362
Bme1390I CCNGG 8 cut(s) 66, 67, 156, 312, 596, 1072, 1555, 1614
Bme18I GGWCC 3 cut(s) 416, 832, 1480
BmeT110I CYCGRG 3 cut(s) 65, 971, 1029
BmgT120I GGNCC 3 cut(s) 416, 832, 1480
BmiI GGNNCC 1 cut(s) 756
BmrFI CCNGG 8 cut(s) 66, 67, 156, 312, 596, 1072, 1555, 1614
BmsI GCATC 8 cut(s) 115, 152, 553, 685, 1339, 1492, 1555, 1597
BplI GAGNNNNNCTC 2 cut(s) 1517, 1549
BpmI CTGGAG 3 cut(s) 429, 1422, 1518
BpuEI CTTGAG 3 cut(s) 114, 258, 375
BpuMI CCSGG 4 cut(s) 66, 67, 312, 1072
BsaI GGTCTC 1 cut(s) 720
BsaJI CCNNGG 6 cut(s) 65, 66, 154, 155, 1553, 1554
Bsc4I CCNNNNNNNGG 6 cut(s) 56, 187, 347, 521, 711, 1477
Bse1I ACTGG 2 cut(s) 306, 1278
BseBI CCWGG 4 cut(s) 156, 596, 1555, 1614
BseDI CCNNGG 6 cut(s) 65, 66, 154, 155, 1553, 1554
BseGI GGATG 4 cut(s) 591, 700, 800, 1570
BseLI CCNNNNNNNGG 6 cut(s) 56, 187, 347, 521, 711, 1477
BseMII CTCAG 8 cut(s) 131, 165, 293, 416, 548, 675, 1320, 1548
BseNI ACTGG 2 cut(s) 306, 1278
BseRI GAGGAG 1 cut(s) 1185
BseSI GKGCMC 2 cut(s) 162, 972
BseXI GCAGC 4 cut(s) 436, 490, 553, 1033
BsgI GTGCAG 2 cut(s) 489, 960
BshFI GGCC 3 cut(s) 29, 388, 407
BsiHKAI GWGCWC 2 cut(s) 880, 1221
BsiHKCI CYCGRG 3 cut(s) 65, 971, 1029
BsiSI CCGG 3 cut(s) 66, 311, 1072
BslI CCNNNNNNNGG 6 cut(s) 56, 187, 347, 521, 711, 1477
BsmAI GTCTC 4 cut(s) 288, 720, 1019, 1440
BsmI GAATGC 3 cut(s) 220, 777, 1313
BsnI GGCC 3 cut(s) 29, 388, 407
Bso31I GGTCTC 1 cut(s) 720
BsoBI CYCGRG 3 cut(s) 65, 971, 1029
Bsp1286I GDGCHC 5 cut(s) 162, 180, 880, 972, 1221
Bsp143I GATC 3 cut(s) 754, 1114, 1365
BspANI GGCC 3 cut(s) 29, 388, 407
BspCNI CTCAG 8 cut(s) 130, 166, 292, 415, 547, 676, 1321, 1547
BspHI TCATGA 1 cut(s) 895
BspLI GGNNCC 1 cut(s) 756
BspMAI CTGCAG 1 cut(s) 1128
BspMI ACCTGC 1 cut(s) 895
BspPI GGATC 3 cut(s) 749, 762, 1109
BspQI GCTCTTC 1 cut(s) 897
BspTI CTTAAG 1 cut(s) 719
BspTNI GGTCTC 1 cut(s) 720
BsrBI CCGCTC 1 cut(s) 1533
BsrI ACTGG 2 cut(s) 306, 1278
BssECI CCNNGG 6 cut(s) 65, 66, 154, 155, 1553, 1554
BssMI GATC 3 cut(s) 754, 1114, 1365
BssSI CACGAG 1 cut(s) 555
Bst2BI CACGAG 1 cut(s) 555
Bst2UI CCWGG 4 cut(s) 156, 596, 1555, 1614
Bst4CI ACNGT 3 cut(s) 207, 423, 1244
Bst6I CTCTTC 5 cut(s) 639, 812, 897, 908, 1137
BstAFI CTTAAG 1 cut(s) 719
BstAPI GCANNNNNTGC 1 cut(s) 140
BstC8I GCNNGC 5 cut(s) 189, 270, 363, 1324, 1410
BstDEI CTNAG 8 cut(s) 117, 174, 279, 402, 534, 684, 1329, 1534
BstF5I GGATG 4 cut(s) 591, 700, 800, 1570
BstH2I RGCGCY 1 cut(s) 1531
BstHHI GCGC 2 cut(s) 187, 1530
BstKTI GATC 3 cut(s) 757, 1117, 1368
BstMAI GTCTC 4 cut(s) 288, 720, 1019, 1440
BstMBI GATC 3 cut(s) 754, 1114, 1365
BstMWI GCNNNNNNNGC 7 cut(s) 140, 184, 248, 362, 572, 1319, 1502
BstNI CCWGG 4 cut(s) 156, 596, 1555, 1614
BstSCI CCNGG 8 cut(s) 64, 65, 154, 310, 594, 1070, 1553, 1612
BstSFI CTRYAG 1 cut(s) 1124
BstSLI GKGCMC 2 cut(s) 162, 972
BstV1I GCAGC 4 cut(s) 436, 490, 553, 1033
BstX2I RGATCY 1 cut(s) 754
BstXI CCANNNNNNTGG 2 cut(s) 37, 829
BstYI RGATCY 1 cut(s) 754
BsuRI GGCC 3 cut(s) 29, 388, 407
BtgZI GCGATG 1 cut(s) 129
BtsCI GGATG 4 cut(s) 591, 700, 800, 1570
BtsI GCAGTG 1 cut(s) 48
BtsIMutI CAGTG 3 cut(s) 48, 419, 1326
BveI ACCTGC 1 cut(s) 895
Cac8I GCNNGC 5 cut(s) 189, 270, 363, 1324, 1410
CaiI CAGNNNCTG 1 cut(s) 521
CciI TCATGA 1 cut(s) 895
CfoI GCGC 2 cut(s) 187, 1530
Cfr13I GGNCC 3 cut(s) 416, 832, 1480
Cfr9I CCCGGG 1 cut(s) 65
Csp6I GTAC 1 cut(s) 1283
CviAII CATG 6 cut(s) 221, 248, 433, 896, 1108, 1391
CviQI GTAC 1 cut(s) 1283
DdeI CTNAG 8 cut(s) 117, 174, 279, 402, 534, 684, 1329, 1534
DpnI GATC 3 cut(s) 756, 1116, 1367
DpnII GATC 3 cut(s) 754, 1114, 1365
DraI TTTAAA 2 cut(s) 427, 982
DraIII CACNNNGTG 1 cut(s) 140
Eam1104I CTCTTC 5 cut(s) 639, 812, 897, 908, 1137
EarI CTCTTC 5 cut(s) 639, 812, 897, 908, 1137
Eco24I GRGCYC 1 cut(s) 180
Eco31I GGTCTC 1 cut(s) 720
Eco47I GGWCC 3 cut(s) 416, 832, 1480
Eco57I CTGAAG 1 cut(s) 1023
Eco88I CYCGRG 3 cut(s) 65, 971, 1029
EcoO109I RGGNCCY 1 cut(s) 1480
EcoRII CCWGG 4 cut(s) 154, 594, 1553, 1612
EcoT38I GRGCYC 1 cut(s) 180
FaeI CATG 6 cut(s) 224, 251, 436, 899, 1111, 1394
FatI CATG 6 cut(s) 220, 247, 432, 895, 1107, 1390
FauI CCCGC 2 cut(s) 354, 1401
FokI GGATG 4 cut(s) 578, 707, 787, 1577
FriOI GRGCYC 1 cut(s) 180
FspBI CTAG 1 cut(s) 1506
GlaI GCGC 2 cut(s) 186, 1529
GsuI CTGGAG 3 cut(s) 429, 1422, 1518
HaeII RGCGCY 1 cut(s) 1531
HaeIII GGCC 3 cut(s) 29, 388, 407
HapII CCGG 3 cut(s) 66, 311, 1072
HhaI GCGC 2 cut(s) 187, 1530
Hin1II CATG 6 cut(s) 224, 251, 436, 899, 1111, 1394
Hin6I GCGC 2 cut(s) 185, 1528
HinP1I GCGC 2 cut(s) 185, 1528
HincII GTYRAC 1 cut(s) 589
HindII GTYRAC 1 cut(s) 589
HindIII AAGCTT 1 cut(s) 1487
HinfI GANTC 4 cut(s) 518, 599, 631, 1027
HpaII CCGG 3 cut(s) 66, 311, 1072
HphI GGTGA 4 cut(s) 315, 876, 922, 981
Hpy166II GTNNAC 3 cut(s) 419, 589, 884
Hpy188I TCNGA 5 cut(s) 120, 175, 999, 1461, 1537
Hpy188III TCNNGA 5 cut(s) 683, 811, 848, 896, 1236
Hpy8I GTNNAC 3 cut(s) 419, 589, 884
Hpy99I CGWCG 1 cut(s) 1404
HpyAV CCTTC 5 cut(s) 390, 577, 685, 1111, 1294
HpyCH4III ACNGT 3 cut(s) 207, 423, 1244
HpyF10VI GCNNNNNNNGC 7 cut(s) 140, 184, 248, 362, 572, 1319, 1502
HpyF3I CTNAG 8 cut(s) 117, 174, 279, 402, 534, 684, 1329, 1534
Hsp92II CATG 6 cut(s) 224, 251, 436, 899, 1111, 1394
HspAI GCGC 2 cut(s) 185, 1528
Kzo9I GATC 3 cut(s) 754, 1114, 1365
LguI GCTCTTC 1 cut(s) 897
LmnI GCTCC 3 cut(s) 436, 1525, 1615
Lsp1109I GCAGC 4 cut(s) 436, 490, 553, 1033
LweI GCATC 8 cut(s) 115, 152, 553, 685, 1339, 1492, 1555, 1597
MaeI CTAG 1 cut(s) 1506
MaeIII GTNAC 3 cut(s) 321, 600, 1577
MalI GATC 3 cut(s) 756, 1116, 1367
MbiI CCGCTC 1 cut(s) 1533
MboI GATC 3 cut(s) 754, 1114, 1365
MfeI CAATTG 1 cut(s) 293
MflI RGATCY 1 cut(s) 754
MhlI GDGCHC 5 cut(s) 162, 180, 880, 972, 1221
MlyI GAGTC 4 cut(s) 527, 608, 625, 1021
MseI TTAA 7 cut(s) 93, 426, 606, 720, 792, 981, 1452
MslI CAYNNNNRTG 1 cut(s) 607
MspA1I CMGCKG 2 cut(s) 449, 1250
MspCI CTTAAG 1 cut(s) 719
MspI CCGG 3 cut(s) 66, 311, 1072
MspR9I CCNGG 8 cut(s) 66, 67, 156, 312, 596, 1072, 1555, 1614
MunI CAATTG 1 cut(s) 293
Mva1269I GAATGC 3 cut(s) 220, 777, 1313
MvaI CCWGG 4 cut(s) 156, 596, 1555, 1614
MwoI GCNNNNNNNGC 7 cut(s) 140, 184, 248, 362, 572, 1319, 1502
NciI CCSGG 4 cut(s) 66, 67, 312, 1072
NdeII GATC 3 cut(s) 754, 1114, 1365
NlaIII CATG 6 cut(s) 224, 251, 436, 899, 1111, 1394
NlaIV GGNNCC 1 cut(s) 756
NmeAIII GCCGAG 1 cut(s) 364
NmuCI GTSAC 2 cut(s) 321, 600
PagI TCATGA 1 cut(s) 895
PaqCI CACCTGC 1 cut(s) 895
PasI CCCWGGG 2 cut(s) 155, 1554
PciSI GCTCTTC 1 cut(s) 897
PctI GAATGC 3 cut(s) 220, 777, 1313
PflMI CCANNNNNTGG 1 cut(s) 521
PfoI TCCNGGA 2 cut(s) 594, 1612
PleI GAGTC 4 cut(s) 526, 607, 625, 1021
PpsI GAGTC 4 cut(s) 526, 607, 625, 1021
PpuMI RGGWCCY 1 cut(s) 1480
PshBI ATTAAT 1 cut(s) 1452
Psp5II RGGWCCY 1 cut(s) 1480
Psp6I CCWGG 4 cut(s) 154, 594, 1553, 1612
PspGI CCWGG 4 cut(s) 154, 594, 1553, 1612
PspN4I GGNNCC 1 cut(s) 756
PspPI GGNCC 3 cut(s) 416, 832, 1480
PspPPI RGGWCCY 1 cut(s) 1480
PstI CTGCAG 1 cut(s) 1128
PstNI CAGNNNCTG 1 cut(s) 521
PsuI RGATCY 1 cut(s) 754
PvuII CAGCTG 2 cut(s) 449, 1250
RsaI GTAC 1 cut(s) 1284
RsaNI GTAC 1 cut(s) 1283
RseI CAYNNNNRTG 1 cut(s) 607
SapI GCTCTTC 1 cut(s) 897
SaqAI TTAA 7 cut(s) 93, 426, 606, 720, 792, 981, 1452
Sau3AI GATC 3 cut(s) 754, 1114, 1365
Sau96I GGNCC 3 cut(s) 416, 832, 1480
SchI GAGTC 4 cut(s) 527, 608, 625, 1021
ScrFI CCNGG 8 cut(s) 66, 67, 156, 312, 596, 1072, 1555, 1614
SduI GDGCHC 5 cut(s) 162, 180, 880, 972, 1221
SfaNI GCATC 8 cut(s) 115, 152, 553, 685, 1339, 1492, 1555, 1597
SfcI CTRYAG 1 cut(s) 1124
SinI GGWCC 3 cut(s) 416, 832, 1480
SmaI CCCGGG 1 cut(s) 67
SmiMI CAYNNNNRTG 1 cut(s) 607
SmlI CTYRAG 4 cut(s) 129, 273, 390, 719
SmoI CTYRAG 4 cut(s) 129, 273, 390, 719
SspMI CTAG 1 cut(s) 1506
StyD4I CCNGG 8 cut(s) 64, 65, 154, 310, 594, 1070, 1553, 1612
TaaI ACNGT 3 cut(s) 207, 423, 1244
TaqI TCGA 1 cut(s) 637
TauI GCSGC 6 cut(s) 49, 79, 106, 245, 1408, 1533
Tru1I TTAA 7 cut(s) 93, 426, 606, 720, 792, 981, 1452
Tru9I TTAA 7 cut(s) 93, 426, 606, 720, 792, 981, 1452
TscAI CASTG 3 cut(s) 48, 426, 1333
TseFI GTSAC 2 cut(s) 321, 600
TseI GCWGC 4 cut(s) 449, 503, 566, 1046
Tsp45I GTSAC 2 cut(s) 321, 600
TspGWI ACGGA 1 cut(s) 1037
TspMI CCCGGG 1 cut(s) 65
TspRI CASTG 3 cut(s) 48, 426, 1333
Van91I CCANNNNNTGG 1 cut(s) 521
Vha464I CTTAAG 1 cut(s) 719
VpaK11BI GGWCC 3 cut(s) 416, 832, 1480
VspI ATTAAT 1 cut(s) 1452
XapI RAATTY 3 cut(s) 545, 794, 977
XmaI CCCGGG 1 cut(s) 65
XspI CTAG 1 cut(s) 1506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.