Rh7DG245600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0002271
Physical Location & Seq
Reverse (-)
25341515 .. 25342703
1189 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG245600.1

Sequence Viewer

Length: 408 bp
ATGAGAGCTAGTGTAGTCAACATGAGTGGACACTCCTCATCAGCAGCAGTTCTGTTTGCAGTGATGGTGGTGACGATGACTATGTTCATCACCAAAACTGATTGCTTCAGCATCAACCGGACAGTCACCGTCTCCTCTACTTGGTGCGATGGCCTCAACGACGACCTGTCGTGCCTAATTGGACAGACCGATTTGGATTCCGACGAGTTCATGCTGGACTCCGAATTCAGCAGAAGAATCTTGGCTGCAGCTATAACCTTCACTGGTGACGCTGGAAATGGTGGAAAGGCTGTGTCGTGTGACCGACAGGGGTTTCCTCCGTGCCACACTGACGTTGCAAACAAAAAACCCCCACCACCAAACTGCGACAAGGAGCCTACCAATCGCGCTTGCTACCACTATCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

14.59

Weight (kDa)

5.15

Isoelectric Point (pI)

53.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 387
AcsI RAATTY 1 cut(s) 224
AcuI CTGAAG 1 cut(s) 91
AfiI CCNNNNNNNGG 1 cut(s) 141
AhdI GACNNNNNGTC 1 cut(s) 166
AluBI AGCT 2 cut(s) 8, 251
AluI AGCT 2 cut(s) 8, 251
Alw26I GTCTC 1 cut(s) 136
AoxI GGCC 1 cut(s) 151
ApeKI GCWGC 3 cut(s) 44, 245, 248
ApoI RAATTY 1 cut(s) 224
AspLEI GCGC 1 cut(s) 389
AsuHPI GGTGA 4 cut(s) 82, 82, 118, 278
BbvI GCAGC 3 cut(s) 56, 232, 260
BccI CCATC 2 cut(s) 58, 143
BcoDI GTCTC 1 cut(s) 136
BfaI CTAG 1 cut(s) 9
BfmI CTRYAG 1 cut(s) 246
BisI GCNGC 3 cut(s) 45, 246, 249
BlsI GCNGC 3 cut(s) 46, 247, 250
BmeRI GACNNNNNGTC 1 cut(s) 166
BmiI GGNNCC 1 cut(s) 375
BmsI GCATC 1 cut(s) 120
BsaWI WCCGGW 1 cut(s) 117
Bsc4I CCNNNNNNNGG 1 cut(s) 141
Bse1I ACTGG 1 cut(s) 268
BseLI CCNNNNNNNGG 1 cut(s) 141
BseNI ACTGG 1 cut(s) 268
BseRI GAGGAG 2 cut(s) 25, 124
BseXI GCAGC 3 cut(s) 56, 232, 260
Bsh1236I CGCG 1 cut(s) 387
BshFI GGCC 1 cut(s) 153
BsiSI CCGG 1 cut(s) 118
BslI CCNNNNNNNGG 1 cut(s) 141
BsmAI GTCTC 1 cut(s) 136
BsmBI CGTCTC 1 cut(s) 136
BsnI GGCC 1 cut(s) 153
BspANI GGCC 1 cut(s) 153
BspFNI CGCG 1 cut(s) 387
BspLI GGNNCC 1 cut(s) 375
BspMAI CTGCAG 1 cut(s) 250
BsrI ACTGG 1 cut(s) 268
Bst4CI ACNGT 2 cut(s) 124, 130
BstC8I GCNNGC 1 cut(s) 391
BstFNI CGCG 1 cut(s) 387
BstHHI GCGC 1 cut(s) 389
BstMAI GTCTC 1 cut(s) 136
BstSFI CTRYAG 1 cut(s) 246
BstUI CGCG 1 cut(s) 387
BstV1I GCAGC 3 cut(s) 56, 232, 260
BsuRI GGCC 1 cut(s) 153
BtgZI GCGATG 1 cut(s) 162
BtsI GCAGTG 1 cut(s) 66
BtsIMutI CAGTG 3 cut(s) 66, 261, 327
Cac8I GCNNGC 1 cut(s) 391
CfoI GCGC 1 cut(s) 389
CseI GACGC 1 cut(s) 278
CspCI CAANNNNNGTGG 2 cut(s) 7, 42
CviAII CATG 2 cut(s) 22, 211
CviJI RGCY 6 cut(s) 8, 153, 245, 251, 290, 376
CviKI_1 RGCY 6 cut(s) 8, 153, 245, 251, 290, 376
DriI GACNNNNNGTC 1 cut(s) 166
Eam1105I GACNNNNNGTC 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 91
EcoRI GAATTC 1 cut(s) 224
Esp3I CGTCTC 1 cut(s) 136
FaeI CATG 2 cut(s) 25, 214
FaiI YATR 4 cut(s) 23, 83, 212, 254
FatI CATG 2 cut(s) 21, 210
Fnu4HI GCNGC 3 cut(s) 45, 246, 249
Fsp4HI GCNGC 3 cut(s) 45, 246, 249
FspBI CTAG 1 cut(s) 9
GlaI GCGC 1 cut(s) 388
GluI GCNGC 3 cut(s) 45, 246, 249
HaeIII GGCC 1 cut(s) 153
HapII CCGG 1 cut(s) 118
HgaI GACGC 1 cut(s) 278
HhaI GCGC 1 cut(s) 389
Hin1II CATG 2 cut(s) 25, 214
Hin6I GCGC 1 cut(s) 387
HinP1I GCGC 1 cut(s) 387
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HinfI GANTC 3 cut(s) 197, 218, 237
HpaII CCGG 1 cut(s) 118
HphI GGTGA 4 cut(s) 82, 82, 118, 278
Hpy166II GTNNAC 2 cut(s) 19, 29
Hpy188I TCNGA 2 cut(s) 202, 223
Hpy8I GTNNAC 2 cut(s) 19, 29
Hpy99I CGWCG 2 cut(s) 164, 206
HpyAV CCTTC 1 cut(s) 268
HpyCH4III ACNGT 2 cut(s) 124, 130
HpyCH4IV ACGT 1 cut(s) 333
HpyCH4V TGCA 3 cut(s) 59, 248, 338
HpySE526I ACGT 1 cut(s) 333
Hsp92II CATG 2 cut(s) 25, 214
HspAI GCGC 1 cut(s) 387
LmnI GCTCC 1 cut(s) 373
LpnPI CCDG 6 cut(s) 131, 179, 200, 249, 258, 293
Lsp1109I GCAGC 3 cut(s) 56, 232, 260
LweI GCATC 1 cut(s) 120
MaeI CTAG 1 cut(s) 9
MaeII ACGT 1 cut(s) 333
MaeIII GTNAC 4 cut(s) 70, 124, 266, 299
MboII GAAGA 1 cut(s) 246
MluCI AATT 2 cut(s) 177, 224
MlyI GAGTC 1 cut(s) 212
MmeI TCCRAC 1 cut(s) 225
MnlI CCTC 4 cut(s) 46, 145, 164, 327
MspI CCGG 1 cut(s) 118
MvnI CGCG 1 cut(s) 387
NlaIII CATG 2 cut(s) 25, 214
NlaIV GGNNCC 1 cut(s) 375
NmuCI GTSAC 4 cut(s) 70, 124, 266, 299
PfeI GAWTC 2 cut(s) 197, 237
PkrI GCNGC 3 cut(s) 46, 247, 250
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
PspN4I GGNNCC 1 cut(s) 375
PstI CTGCAG 1 cut(s) 250
SatI GCNGC 3 cut(s) 45, 246, 249
SchI GAGTC 1 cut(s) 212
SetI ASST 5 cut(s) 10, 168, 253, 260, 336
SfaNI GCATC 1 cut(s) 120
SfcI CTRYAG 1 cut(s) 246
Sse9I AATT 2 cut(s) 177, 224
SspMI CTAG 1 cut(s) 9
TaaI ACNGT 2 cut(s) 124, 130
TaiI ACGT 1 cut(s) 336
TaqII GACCGA 2 cut(s) 203, 318
TasI AATT 2 cut(s) 177, 224
TfiI GAWTC 2 cut(s) 197, 237
TscAI CASTG 3 cut(s) 66, 268, 334
TseFI GTSAC 4 cut(s) 70, 124, 266, 299
TseI GCWGC 3 cut(s) 44, 245, 248
Tsp45I GTSAC 4 cut(s) 70, 124, 266, 299
TspDTI ATGAA 2 cut(s) 76, 199
TspGWI ACGGA 1 cut(s) 309
TspRI CASTG 3 cut(s) 66, 268, 334
XapI RAATTY 1 cut(s) 224
XspI CTAG 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.